View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9162_low_5 (Length: 840)

Name: NF9162_low_5
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9162_low_5
NF9162_low_5
[»] chr5 (8 HSPs)
chr5 (39-619)||(1474683-1475282)
chr5 (662-829)||(1474519-1474686)
chr5 (301-345)||(7398744-7398788)
chr5 (301-340)||(15916956-15916995)
chr5 (298-348)||(11168309-11168359)
chr5 (301-346)||(1935070-1935115)
chr5 (301-346)||(3081295-3081340)
chr5 (319-395)||(5696493-5696570)
[»] chr3 (5 HSPs)
chr3 (301-381)||(11500174-11500258)
chr3 (301-346)||(40674180-40674225)
chr3 (298-346)||(46891456-46891504)
chr3 (314-380)||(42157744-42157813)
chr3 (301-346)||(36637873-36637918)
[»] chr1 (3 HSPs)
chr1 (301-399)||(43530205-43530306)
chr1 (301-380)||(35619440-35619522)
chr1 (298-331)||(6347287-6347320)
[»] chr4 (5 HSPs)
chr4 (301-381)||(28880064-28880147)
chr4 (301-346)||(46669908-46669953)
chr4 (297-340)||(56117951-56117994)
chr4 (301-346)||(11976910-11976955)
chr4 (301-346)||(48620362-48620407)
[»] chr8 (3 HSPs)
chr8 (302-348)||(33412169-33412215)
chr8 (301-381)||(13258559-13258642)
chr8 (301-346)||(41455332-41455377)
[»] chr2 (2 HSPs)
chr2 (301-374)||(11522112-11522188)
chr2 (298-374)||(42946656-42946735)
[»] chr7 (2 HSPs)
chr7 (301-346)||(1278011-1278056)
chr7 (301-381)||(31891349-31891431)


Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 39 - 619
Target Start/End: Complemental strand, 1475282 - 1474683
Alignment:
Q  39 aatctcaatgactaatttaagtttgtcttatagaatcattgactaatttatgaatagaatttccaatgatgcacttaggctctatttggaagattcaagg 138  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1475282 aatctcaatgactaatttaagtttgtcttatagaatcgttgactaatttatgaatagaatttccaatgatgcacttaggctctatttggaagattcaagg 1475183  T
Q  139 aaaaaagactttggaaaagaaaggaagaagtgtaaggaattgggatattaagtggagaaagcttttccaattaacnnnnnnncatgatacaaaatctcgg 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||       ||||||||||||||||||    
T  1475182 aaaaaagactttggaaaagaaaggaagaagtgtaaggaattgggatattaagtggagaaagcttttc----taactttttttcatgatacaaaatctcgg 1475087  T
Q  239 taatttgatgaattcaaaatgtattgtattatgatttttgaggattttttaggactatcataaattctttaaatctaatatatgttgttataatactctt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1475086 taatttgatgaattcaaaatgtattgtattatgatttttgaggattttttaggactatcataaattctttaaatctaatatatgttgttataatactctt 1474987  T
Q  339 aacatt---aatatattagtggtaaacattcatttatcattctctataaactcactattttaaacaaacttgaaaatt--tctttccccctaaccctctc 433  Q
    ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||    
T  1474986 aacattaacaatatattagtggtaaacattcatttatcattctctataaactcactattttaaacaaacttgaaaatttctctttccccctaaccctatc 1474887  T
Q  434 ccactaaagctctcacttcttcagtatgggactatccactaatcccagttacttgcatcaatatatgcatgccatttataaccgggaagtcatcacatat 533  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1474886 ccactaaagctctcacttcttcaatatgggactatccactaatcccagttacttgcatcaacatatgcatgccatttataaccgggaagtcatcacatat 1474787  T
Q  534 tatcgatacttatgac------------------tttcagtcgacatctnnnnnnnccaaagaaatcaattttaaggggcactgtgcatttacaatatca 615  Q
    ||||||||||||||||                  |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  1474786 tatcgatacttatgacaaaatagtcagcaatatttttcagtcgacatctaaaaaaaccaaagaaatcaattttaaggggcactgtgcatttacaatatca 1474687  T

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Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 662 - 829
Target Start/End: Complemental strand, 1474686 - 1474519
Alignment:
Q  662 gtattttcctctttctatatctacatttggtattctcctgctataggacaagacatacacaattgattttatgcttttcaatcttgaatctccgaggaag 761  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  1474686 gtattttcctctttctatatctacatttggtattctcctgctataggacaagacatacacaattgactttatgcttttccatcttgaatctccgaggaag 1474587  T
Q  762 agctaagcttgcctttgctttctgataatggtgcgccgtcatctacacttctcttagcctctgtgctc 829  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1474586 agctaagcttgcctttgctttctgatgatggtgcgccgtcatctacacttctcttagcctctgtgctc 1474519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 7398788 - 7398744
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacatta 345  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||||    
T  7398788 aattcttcaaatctaatatatgtagttataatactcttaaaatta 7398744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 15916956 - 15916995
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaa 340  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  15916956 aattctttaaatttaatatatgttgttataatattcttaa 15916995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 11168309 - 11168359
Alignment:
Q  298 ataaattctttaaatctaatatatgttgttataatactcttaacattaata 348  Q
    |||||||||| ||||| ||| |||||| ||||||||||||||| |||||||    
T  11168309 ataaattcttcaaatcaaatctatgttattataatactcttaaaattaata 11168359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 1935115 - 1935070
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacattaa 346  Q
    ||||||| |||| |||||||||||||||||||| |||||| |||||    
T  1935115 aattcttcaaatttaatatatgttgttataatattcttaaaattaa 1935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 3081340 - 3081295
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacattaa 346  Q
    |||||||||||| ||||||||||| |||||||| |||||| |||||    
T  3081340 aattctttaaatttaatatatgttcttataatattcttaaaattaa 3081295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 5696570 - 5696493
Alignment:
Q  319 tatgttgttataatactcttaacattaa-tatattagtggtaaacattcatttatcattctctataaactcactattt 395  Q
    ||||||||||||||||| | || ||||| ||||||| |  ||||||||  |||||||||||||| ||| |||||||||    
T  5696570 tatgttgttataatactttcaaaattaaatatattaatcataaacattagtttatcattctctacaaaatcactattt 5696493  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 11500174 - 11500258
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacatt----aatatattagtggtaaacattcatttatcattctcta 381  Q
    ||||||| |||| |||||||||||||||||||| |||||| |||    ||||||||| |  |||||||| |||||||||||||||    
T  11500174 aattcttcaaatttaatatatgttgttataatattcttaaaattaaaaaatatattaattataaacattaatttatcattctcta 11500258  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 40674180 - 40674225
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacattaa 346  Q
    |||||||||||| |||||||||||||||||||| |||||| |||||    
T  40674180 aattctttaaatttaatatatgttgttataatattcttaaaattaa 40674225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 46891456 - 46891504
Alignment:
Q  298 ataaattctttaaatctaatatatgttgttataatactcttaacattaa 346  Q
    |||||||||| |||| |||||||||||||||||||| |||||| |||||    
T  46891456 ataaattcttcaaatttaatatatgttgttataatattcttaaaattaa 46891504  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 42157813 - 42157744
Alignment:
Q  314 taatatatgttgttataatactcttaacattaa---tatattagtggtaaacattcatttatcattctct 380  Q
    |||| ||||||||||||||||||| || |||||   ||||| | || |||||||||||||||||||||||    
T  42157813 taatctatgttgttataatactctcaaaattaaaaatatatgaatgataaacattcatttatcattctct 42157744  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 36637873 - 36637918
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacattaa 346  Q
    ||||||| |||| |||||||||||||||||||| |||||| |||||    
T  36637873 aattcttcaaatttaatatatgttgttataatattcttaaaattaa 36637918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 301 - 399
Target Start/End: Complemental strand, 43530306 - 43530205
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacatt---aatatattagtggtaaacattcatttatcattctctataaactcactatttta 397  Q
    ||||||| |||| ||||||||||||||||||||||||||| |||   ||||||||| |  ||| |||| |||||||| |||||| |||  |||| |||||    
T  43530306 aattcttcaaatttaatatatgttgttataatactcttaaaattaaaaatatattaatcataagcattaatttatcactctctaaaaaaacactctttta 43530207  T
Q  398 aa 399  Q
    ||    
T  43530206 aa 43530205  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 35619522 - 35619440
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacattaa---tatattagtggtaaacattcatttatcattctct 380  Q
    ||||||| |||| |||||||||||||||||||| |||||| |||||   ||||||| |  |||||||| |||||||| |||||    
T  35619522 aattcttcaaatttaatatatgttgttataatattcttaaaattaaaagtatattaatcataaacattaatttatcactctct 35619440  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 331
Target Start/End: Complemental strand, 6347320 - 6347287
Alignment:
Q  298 ataaattctttaaatctaatatatgttgttataa 331  Q
    |||||||||||||||||||| |||||||||||||    
T  6347320 ataaattctttaaatctaatctatgttgttataa 6347287  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 28880064 - 28880147
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacatt---aatatattagtggtaaacattcatttatcattctcta 381  Q
    ||||||| |||| |||||||||||||||||||| |||||| |||   ||||||||| |  |||||||| |||||||| ||||||    
T  28880064 aattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataaacattaatttatcactctcta 28880147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 46669953 - 46669908
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacattaa 346  Q
    |||||||||||| |||||||||||||||||||| |||||| |||||    
T  46669953 aattctttaaatttaatatatgttgttataatattcttaaaattaa 46669908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 56117951 - 56117994
Alignment:
Q  297 cataaattctttaaatctaatatatgttgttataatactcttaa 340  Q
    |||||||||||||||| ||| |||||||||||||||| ||||||    
T  56117951 cataaattctttaaatttaacatatgttgttataatattcttaa 56117994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 11976910 - 11976955
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacattaa 346  Q
    |||| ||||||| |||||||||||||||||||| |||||| |||||    
T  11976910 aattttttaaatttaatatatgttgttataatattcttaatattaa 11976955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 48620362 - 48620407
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacattaa 346  Q
    ||||||| |||| |||||||||||||||||||| |||||| |||||    
T  48620362 aattcttcaaatttaatatatgttgttataatattcttaaaattaa 48620407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 33412215 - 33412169
Alignment:
Q  302 attctttaaatctaatatatgttgttataatactcttaacattaata 348  Q
    ||||||||||| |||| ||||||||||||||| |||||| |||||||    
T  33412215 attctttaaatttaatctatgttgttataatattcttaaaattaata 33412169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 13258559 - 13258642
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacatt---aatatattagtggtaaacattcatttatcattctcta 381  Q
    ||||||| ||||| ||| |||||| ||| ||||||||||| |||   ||||||||| | |||| |||| |||||||||||||||    
T  13258559 aattcttcaaatccaatctatgttcttagaatactcttaaaattaaaaatatattaatcgtaagcattaatttatcattctcta 13258642  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 41455332 - 41455377
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacattaa 346  Q
    ||||||| |||| |||||||||||||||||||| |||||| |||||    
T  41455332 aattcttcaaatttaatatatgttgttataatattcttaaaattaa 41455377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 11522188 - 11522112
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacatt---aatatattagtggtaaacattcatttatca 374  Q
    ||||||| |||| |||||||||||||||||||| |||||| |||   ||||||||| |  |||||||| ||||||||    
T  11522188 aattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcttaaacattaatttatca 11522112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 374
Target Start/End: Complemental strand, 42946735 - 42946656
Alignment:
Q  298 ataaattctttaaatctaatatatgttgttataatactcttaacatt---aatatattagtggtaaacattcatttatca 374  Q
    |||||||||| |||| ||||||||||||||||| || |||||| |||   ||||||||| |  |||||||| ||||||||    
T  42946735 ataaattcttcaaatttaatatatgttgttatactattcttaaaattaaaaatatattaatcataaacattaatttatca 42946656  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 1278011 - 1278056
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacattaa 346  Q
    ||||||| |||| |||||||||||||||||||| |||||| |||||    
T  1278011 aattcttcaaatttaatatatgttgttataatattcttaaaattaa 1278056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 31891349 - 31891431
Alignment:
Q  301 aattctttaaatctaatatatgttgttataatactcttaacatt---aatatattagtggtaaacattcatttatcattctcta 381  Q
    ||||||| |||| |||| ||||||||||||||| |||||| |||   |||||||||||  |||||||| || ||||||||||||    
T  31891349 aattcttcaaatttaatctatgttgttataatattcttaa-attaaaaatatattagtcataaacattaatctatcattctcta 31891431  T

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