View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9162_low_6 (Length: 838)
Name: NF9162_low_6
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9162_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 699; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 18 - 805
Target Start/End: Original strand, 4174418 - 4175203
Alignment:
| Q |
18 |
attgggtgccaagcgtctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagccatcgatccatcaacggagtcaagacta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174418 |
attgggtgccaagcgtctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagccatcgatccatcaacggagtcaagacta |
4174517 |
T |
|
| Q |
118 |
tagtctcatccggcgtagaatccattatgtttagtagctctggaggccagttttctactagatccttagcttgcttctttagcaccgatggctcggttgt |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174518 |
tagtgtcatccggcgtagaatccattatgtttagtagctctggaagccagttttctacaagatccttagcttgcttctttagcaccgatggctcggttgt |
4174617 |
T |
|
| Q |
218 |
tttaggacctaccattgaactcaactatttttcatttgaacaataaactaagtaatttaactgtatatgcatgtagttagaagtaagaacctggagatga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174618 |
tttaggacctaccattgaactcaactatttttcatttgaacaataaactaagtaatttaactgtatatgcatgtagttagaagtaagaacctggagatga |
4174717 |
T |
|
| Q |
318 |
actattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatgctgcacgtaacccttttccaaagatgtaattcacccgtggctcaaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
4174718 |
actattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatcctgcacgtaacccttttccatagatgtaattcacccgtagctcaaaa |
4174817 |
T |
|
| Q |
418 |
ggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtactttggctcagaaaatcccatccacttagctatcggggatcgaatgc |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174818 |
ggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtaatttggctcagaaaatcccatccacttagctatcggggatcgaatgc |
4174917 |
T |
|
| Q |
518 |
cgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaatagtttttaggaccagagcttcatgattggccattatgtttgtaagatccttt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174918 |
cgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaatagtttttaggaccagagcttcatgattggccattatgtttgtaagatccttt |
4175017 |
T |
|
| Q |
618 |
tctgcactatgtttttagagtcataaccaatcatgtatgtgcttagctttatata-nnnnnnnnattagaatcgtgtttaaacacatttgacaaaagcca |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
4175018 |
tctgcactatgtttttagagtcataaccaatcatatatgtgcttagcttcatatatatatttttattagaatcgtgtttaaacacatttgacacaagcca |
4175117 |
T |
|
| Q |
717 |
aatgctttttcaactaagttcggtaaaaataataaaatcacggttgaatgagtaaatttcaacaccaaacacaccataaatcacaatga |
805 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4175118 |
aatgttttttcaactaagttcggtaaa---aataaaatcacggttgaatgagtaaatttcaacaccaaacacaccataaatcacaatga |
4175203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 818
Target Start/End: Original strand, 4170420 - 4171234
Alignment:
| Q |
18 |
attgggtgccaagcgtctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagccatcgatccatcaacggagtcaagacta |
117 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||| || || |
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| T |
4170420 |
attgggtgccaagcatcaccaacgagtacaactctacctgcagaaacaggtggacttgttgatggccaaagccatcgatccaccaacggagtcctgatta |
4170519 |
T |
|
| Q |
118 |
tagtctcatccggcgtagaatccattatgtttagtagctctggaggccagttttctactagatccttagcttgcttctttagcaccgatggctcggttgt |
217 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4170520 |
tagtgtcatccggtgtagaatccattatgtttagtagctctggaggccagttttccactagatccttagcttgcttctttagcaccgatggctcagttgt |
4170619 |
T |
|
| Q |
218 |
tttaggacctaccattgaactcaactatttttcatttgaacaataaactaagtaatttaactgtatatgcatgta---gttagaagtaagaacctggaga |
314 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || ||| | || || | |||||| |||||||||| |
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| T |
4170620 |
tttaggacctgccattgaactcaactatttttcatttgaacaataaactcagtaatttaatcatacatggacttattagtaacaagtaacaacctggaga |
4170719 |
T |
|
| Q |
315 |
tgaactattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatgctgcacgtaacccttttccaaagatgtaattcacccgtggctca |
414 |
Q |
| |
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|||||| |||||| || ||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| | | |
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| T |
4170720 |
tgaactgttgaagcagataaaccaatagactttggttggagaaacaggaacatatcctgcgcgtaacccttttccatagatgtaattcacccgtggttga |
4170819 |
T |
|
| Q |
415 |
aaaggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtactttggctcagaaaatcccatccacttagctatcggggatcgaa |
514 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
4170820 |
aaaggttgtccgtctgaataggaggcaagtccacggaaagcacaatgaccaacgaactttggctcagaaaatcccatccacttagctatcggtgatcgaa |
4170919 |
T |
|
| Q |
515 |
tgccgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaatagtttttaggaccagagcttcatgattggcca-------ttatgtttgt |
607 |
Q |
| |
|
| ||||||||||||||||||||||||| | ||||| |||||||||||||| | |||||||||| | ||||||| |||||| | |||||| ||| |
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|
| T |
4170920 |
ttccgtcgcaccctattacaatctgtttatacatggaatcaatttgttaagactttttaggactaaagcttcagaattggctattaatgtttatgtctgt |
4171019 |
T |
|
| Q |
608 |
aagatccttttctgcactatgtttttagagtcataaccaatcatgtatgtgcttagctttata------tannnnnnnnattagaatcgtgtttaaacac |
701 |
Q |
| |
|
||||||||||| |||| |||||||| | |||| |||||||| ||||| ||||||| ||| | || |||||| ||||||||||| |
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|
| T |
4171020 |
aagatccttttgtgcagtatgttttcatggtcacaaccaatc----atgtggttagcttaatagtatgttttttttttcatcagaatcatgtttaaacac |
4171115 |
T |
|
| Q |
702 |
atttg--acaaaagccaaatgctttttcaactaagttcggtaaaaataataaaatcacggttgaatgagtaaatttcaacaccaaacacaccataaatca |
799 |
Q |
| |
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| ||| ||| || ||||||| ||| |||||| |||| | || | ||||||||||| |||||||| ||||| ||||||||||||||||||||||||| | |
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| T |
4171116 |
agttggaacagaaaccaaatgttttgtcaactgagtttgtaaatactaataaaatcatggttgaataagtaactttcaacaccaaacacaccataaatta |
4171215 |
T |
|
| Q |
800 |
caatgactaacctttgcaa |
818 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4171216 |
caatgactaacctttgcaa |
4171234 |
T |
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