View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9162_low_8 (Length: 715)
Name: NF9162_low_8
Description: NF9162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9162_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 271 - 511
Target Start/End: Original strand, 32684851 - 32685095
Alignment:
| Q |
271 |
atacaatttgaatagcaaatatatgtacttacctcataagacatgttatcaatgtctaagcgcatatcttgatgttcatcaaccagattttcatcttcat |
370 |
Q |
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| T |
32684851 |
atacaatttgaatatcaa-tacatgtacttacctcataagacatgttatcaatgtccaagcgcatatcttgatgttcatcaaccagattttcatcttcat |
32684949 |
T |
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| Q |
371 |
cacttaaatcactttcctacacaaatgaagtttaattgataagtaaatctatatgttttgctaaaattattatgcggaag----taaatcactttcctaa |
466 |
Q |
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| T |
32684950 |
caattaaatcactttcctacacaaatgaagtttaattgataagtaaatctatatgttttcctaaaattattatgcggaagtaattaaatcactctcctaa |
32685049 |
T |
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| Q |
467 |
aaaatttatttat-cttttaagttttaaaacaaataacaaagtaaa |
511 |
Q |
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| T |
32685050 |
aaaatttatttatccttttaagttttaaaacaaataacaaagtaaa |
32685095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 32684628 - 32684798
Alignment:
| Q |
25 |
gatcatacctggcatatcatgcaagcatcgatttcttgactgtcataaggtgaatataattttgtcttgagttgagtttcaattgttttctctggtatac |
124 |
Q |
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| T |
32684628 |
gatcatacctggcatatcatgcaagcatcgatttcttgactgtcataaggtgaatataattttgtcttaagttgactttcaattgttttctctggtaaac |
32684727 |
T |
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| Q |
125 |
tagtgcttacatcgccaatcctctcacccaatgcaacaagttcctataaataataatttcaagtgtaaata |
195 |
Q |
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| T |
32684728 |
tagtgcttacattgccaatcctctcacccaatgcaacaagttcctataaataataatttcaagtgtaaata |
32684798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 570 - 701
Target Start/End: Original strand, 32685094 - 32685225
Alignment:
| Q |
570 |
aattttattgtttgctagtagtgagaaacgttacatcaataaagatgaagctggaggggttaacacttcgatttctgagcgttatctcaggtatgactcc |
669 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685094 |
aattttattgtttgctagtagtgagaaacattacatcaataaagatgaagctggaggggttaacacttcgatttctgagcgttatctcaggtatgactcc |
32685193 |
T |
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| Q |
670 |
atgtggtcgtaaaatctgaaggcccgtctgtg |
701 |
Q |
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| T |
32685194 |
atgtggttgtaaaatctgaaggcccgtctgtg |
32685225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 32694444 - 32694564
Alignment:
| Q |
292 |
tatgtacttacctcataagacatgttatcaatgtctaagcgcatatcttgatgttcatcaaccagattttcatcttcatcacttaaatcactttcctaca |
391 |
Q |
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|||| |||||||||||||||||| | || ||||| |||||||||||| | || | |||| ||||||| | |||||||| ||||| || ||||| | |
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| T |
32694444 |
tatgcacttacctcataagacatatcctctatgtccaagcgcatatctcggtgatggtcaatcagatttcccacttcatcaattaaagcaacatcctata |
32694543 |
T |
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| Q |
392 |
caaatgaagtttaattgataa |
412 |
Q |
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|||||||||||| |||||||| |
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| T |
32694544 |
caaatgaagtttcattgataa |
32694564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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