View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9163_high_10 (Length: 266)
Name: NF9163_high_10
Description: NF9163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9163_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 31754388 - 31754140
Alignment:
| Q |
1 |
attgttctcttgtttttgtgcatcataattcggacaacgcatattattgaaaagaaagttgaattgtcgccagaaaaataaattaggtttctgatttttg |
100 |
Q |
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| T |
31754388 |
attgttctcttgtttttgtgcatcacaattttgacaacgcatattattgaaaagaaagttgaattgtcgccggaaaaataaattaggtttctgatttttg |
31754289 |
T |
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| Q |
101 |
cacctctagcccttacaagtggatttcatgtagtactcatgctaaatattgttcctttttattcaaaatttgtatttctatattaatttcaaacttattt |
200 |
Q |
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| T |
31754288 |
cacttctagcccttacaagtggatttcatgtagtactcatgctaaatattgttcctttttattcaaaatttgtatttctatattaatttcaaacttattt |
31754189 |
T |
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| Q |
201 |
tgagttcaattatagttgaatcatattcatgtcacatttacatatgaat |
249 |
Q |
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| T |
31754188 |
tgagttcaattatagttgaatcatattcatgtcacatttacatatgaat |
31754140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 31761672 - 31761582
Alignment:
| Q |
158 |
tttattcaaaatttgtatttctatattaatttcaaacttattttgagttcaattatagttgaatcatattcatgtcacatttacatatgaa |
248 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||| |||||||||| |
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| T |
31761672 |
tttattcaaaatttatatttctatattaatttcaaacttattatgagttaaattataagtgcatcatattcatgtcacaaatacatatgaa |
31761582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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