View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9163_high_2 (Length: 594)
Name: NF9163_high_2
Description: NF9163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9163_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 50 - 575
Target Start/End: Original strand, 34054454 - 34054977
Alignment:
| Q |
50 |
taaacaaaatgttttcacataaaaggttgtttgcattcaaaattttcatttgtttgagaaatttgttgacactaatgattagagagcttaaataaataaa |
149 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054454 |
taaacaaaatgttttcacataaaaggttgtttgcattcaaaatgttcatttgtttgagaaatttgttgacactaatgattagagagcttaaataaataaa |
34054553 |
T |
|
| Q |
150 |
gtggggggaattcaaaggcagccatattacataggaagaggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcag |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054554 |
gtggggggaattcaaaggcagccatattacacaggaagaggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcag |
34054653 |
T |
|
| Q |
250 |
catccactataacagagtcaccctctttaatctccctgtcacagagagctcaatcttagaggtctgggaccataactaggatcataacctttgtcgacaa |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054654 |
catccactataacagagtcaccctctttaatctccctgtcacagagagctcaatcttagaggtctgggaccataactaggatcataacctttgtcgacaa |
34054753 |
T |
|
| Q |
350 |
ctctcttcctaaatctctctgtcaccgaaagctcaatctctcgactttcagtttctctgacacttccttcagcattatacaaactatctacttaacatcc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34054754 |
ctctcttcctaaatctctctgtcaccgaaagctcaatctctcgactttcagtttctctgacacttccttcagcattatacaaactatctacttaacatcc |
34054853 |
T |
|
| Q |
450 |
agttatgtaagttgcctcaaaataatttcatccagcctattcaagaactctggcctaaagtattgcttcactcctcggtcgccaagcttttgatttggct |
549 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
34054854 |
agttatgtaagttgcctc--gataatttcatccagcctattcaagaactctggcctaaagtattgcttcactcctcggtcgccaagcttttgatttggtt |
34054951 |
T |
|
| Q |
550 |
ataactgttgtccgacagcctccttt |
575 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
34054952 |
ataactgttgtccgacagcctccttt |
34054977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 1e-67; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 303 - 562
Target Start/End: Complemental strand, 47383293 - 47383029
Alignment:
| Q |
303 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctc-tcgactttcagt |
401 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| || ||||||||||| | | ||||||| |
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|
| T |
47383293 |
tcttagaggtctggcaccataactaggattataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagt |
47383194 |
T |
|
| Q |
402 |
ttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaa---aataatttcatccagcctattcaagaact |
498 |
Q |
| |
|
|||| |||| ||||||||||||||| | |||||| |||||| ||||||| |||||||||||| || ||| ||||||||||||||||||||||||| |
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|
| T |
47383193 |
ctctcgaacacctccttcagcattatatcagctatctccttaacctccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaact |
47383094 |
T |
|
| Q |
499 |
ctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
562 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||| ||||| |
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|
| T |
47383093 |
ctggcctaaagtattgcttcagctcctcggtcaccaagcttttgattcggttataactgctgtcc |
47383029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 303 - 562
Target Start/End: Complemental strand, 47818366 - 47818094
Alignment:
| Q |
303 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctctc-gactttcagt |
401 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||| | ||||||| |
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|
| T |
47818366 |
tcttagaggtctggcaccataattaggattataaccttcatcgaccactctctccctaaatctctctgtcactgaaagctcaatctctttggttttcagt |
47818267 |
T |
|
| Q |
402 |
ttctctgacacttccttcagca-ttatacaaactatctact-------taacatccagttatgtaagttgcctcaaaataat---ttcatccagcctatt |
490 |
Q |
| |
|
|||| |||| ||||| |||| ||||| | |||||| || || | ||||||| |||||||||||| |||| ||| ||||||||||||||| |
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|
| T |
47818266 |
ctctcgaacacctccttaagcaattatatcagctatctcctaactccttagcctccagttttgtaagttgcctgaaaacaatcatttcatccagcctatt |
47818167 |
T |
|
| Q |
491 |
caagaactctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
562 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || |||||||||||||| || |||||||||||||| |
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|
| T |
47818166 |
caagaactctggcctaaagtattgcttcagctcctcgatcaccaagcttttgattcggttataactgttgtcc |
47818094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 47383442 - 47383348
Alignment:
| Q |
189 |
ggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctc |
283 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47383442 |
ggcaatgaatttggagcaccactactaccattgagcacaatcacatttccatcggaatcagcatccactataacagagtcaccctctttaatctc |
47383348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 47818513 - 47818421
Alignment:
| Q |
189 |
ggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctc |
283 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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|
| T |
47818513 |
ggcaatgaatttgcagcaccactactaccattgagcacaatcacatttccatcagaatcagcatccactata--agagtcgccctctttaatctc |
47818421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 47383883 - 47383829
Alignment:
| Q |
55 |
aaaatgttttcacataaaaggttgtttgcattcaaaattttcatttgtttgagaa |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
47383883 |
aaaatgttttcacataaaagcttgtttgcattgaaaatgttcatttgtttgagaa |
47383829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 45116366 - 45116297
Alignment:
| Q |
214 |
taccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctc |
283 |
Q |
| |
|
|||||||||| ||||| ||||| || || |||||| |||||||||| || |||||||||||||| ||||| |
|
|
| T |
45116366 |
taccattgagaacaatcacattaccctcggaatcaacatccactattacggagtcaccctctttgatctc |
45116297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 303 - 562
Target Start/End: Complemental strand, 40246007 - 40245743
Alignment:
| Q |
303 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctc-tcgactttcagt |
401 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| || ||||||||||| | | ||||||| |
|
|
| T |
40246007 |
tcttagaggcctggccccataactaggattataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagt |
40245908 |
T |
|
| Q |
402 |
ttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaa---aataatttcatccagcctattcaagaact |
498 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||| |||||| ||||||| || |||||||| || ||| |||||||| |||||||||||||||| |
|
|
| T |
40245907 |
ctctcgaacacctccttcagcattatatctgctatctccttaacctccagtttagtgagttgcctgaaaacaatcatttcatcaagcctattcaagaact |
40245808 |
T |
|
| Q |
499 |
ctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
562 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||| ||||||| |||||| | |||||||| ||||| |
|
|
| T |
40245807 |
ctggcctaaagtattgtttcagctcttcggtcaccaagctcttgattctgttataactgctgtcc |
40245743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 40246156 - 40246059
Alignment:
| Q |
189 |
ggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctccct |
286 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
40246156 |
ggcaatgaatctggagcaccagtactaccgttgagtacaatcacgtttccatcagaatcagcatccactataacagagtcgccctctttaatctccct |
40246059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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