View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9163_high_6 (Length: 363)

Name: NF9163_high_6
Description: NF9163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9163_high_6
NF9163_high_6
[»] chr5 (15 HSPs)
chr5 (3-299)||(10218122-10218419)
chr5 (274-339)||(11049560-11049625)
chr5 (38-315)||(10603276-10603551)
chr5 (27-178)||(10664558-10664710)
chr5 (35-315)||(10599611-10599889)
chr5 (12-164)||(10661470-10661623)
chr5 (116-188)||(10764622-10764694)
chr5 (12-83)||(10653584-10653655)
chr5 (35-317)||(10610231-10610511)
chr5 (35-186)||(10748423-10748575)
chr5 (27-165)||(7191675-7191814)
chr5 (36-166)||(10557589-10557720)
chr5 (41-161)||(10549467-10549588)
chr5 (274-323)||(10579522-10579571)
chr5 (274-323)||(10590072-10590121)
[»] chr6 (4 HSPs)
chr6 (25-83)||(12956834-12956892)
chr6 (27-185)||(12905840-12905999)
chr6 (28-166)||(12930948-12931087)
chr6 (28-63)||(12947417-12947452)
[»] chr2 (2 HSPs)
chr2 (116-185)||(17924893-17924962)
chr2 (27-83)||(17924803-17924859)
[»] chr3 (1 HSPs)
chr3 (274-323)||(31468804-31468853)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 3 - 299
Target Start/End: Original strand, 10218122 - 10218419
Alignment:
Q  3 gattatactcaacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttg 102  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218122 gattatacccaacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttg 10218221  T
Q  103 caacttagtataatt-gtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatctttt 201  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  10218222 caacttagtacaatttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttagcaatagtagatcattt 10218321  T
Q  202 agccatcctagagttggaacttgtccaacaaaatagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattgg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218322 agccatcctagagttggaacttgtccaacaaaatagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattgg 10218419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 11049560 - 11049625
Alignment:
Q  274 gcatttgttatggaagtggggattggacctgagaattgatttcccccaatcgcacaaaattggaga 339  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11049560 gcatttgttatggaagtggggattggtcctgagaattgatttcccccaatcgcacaaaattggaga 11049625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 315
Target Start/End: Complemental strand, 10603551 - 10603276
Alignment:
Q  38 gataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaact 136  Q
    |||||||| |||||  ||||| ||||  | ||||||||||| |||||| ||| ||| ||   |||||||||| || | || ||||| |||||||||||||    
T  10603551 gataaatttcctatagaattttgcaaactacctccaaaattattattggttaaagatagtgattgcaacttactacagtttgtcaatgattttaaaaact 10603452  T
Q  137 ccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaaata 236  Q
    |||||||  ||||||| ||||||||||||  |||   |||||||||||||||    ||||||||||||   |||||| |||||||||||||||||||||     
T  10603451 ccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaaatg 10603352  T
Q  237 gttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattggacctgagaattgattt 315  Q
    ||| | ||| |  ||||||| ||| |    ||| || ||||| |  || |||||||||||||||||| |||||||||||    
T  10603351 gttgtcaccaatttcaaataatgtca---aagaagaagcattcgaaattgaagtggggattggacctaagaattgattt 10603276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 10664558 - 10664710
Alignment:
Q  27 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 125  Q
    |||||| | ||||||||||||||| |||||||| ||| ||| |||||||||| ||||||  |||||||| |||||| |   || || |||| ||||| ||    
T  10664558 taagttgattggataaattgcctacgaaatttgtcaatttggctccaaaattattattgcatatagaaatcacttgtagtctactacaattcgtcaagga 10664657  T
Q  126 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattcca 178  Q
     ||||| |||||||||||||| ||||| ||||||||||||  |||| ||||||    
T  10664658 ctttaagaactccaaatccttagttgagttgtcacctaaactgttgaattcca 10664710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 315
Target Start/End: Complemental strand, 10599889 - 10599611
Alignment:
Q  35 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 133  Q
    ||||||||||| || ||  ||||| ||||  | ||||||||||| |||| | ||| ||| |||  |||||||||| || | || ||||| || || ||||    
T  10599889 gtggataaatttccaatagaattttgcaaactacctccaaaattattataggttaaagatagcgattgcaacttactacagtttgtcaatgacttcaaaa 10599790  T
Q  134 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaa 233  Q
    ||| ||||||| |||||||  |||||||||||  |||   |||||||||||||||    ||||||||||||   |||||| |||||||||||||||||||    
T  10599789 actgcaaatccattgttgagctgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaa 10599690  T
Q  234 atagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattggacctgagaattgattt 315  Q
    || ||| | |||||  ||||||| ||| |    ||| || |||||||  || ||||| ||||||||||||||||||| ||||    
T  10599689 atggttgtcaccgatttcaaataatgtca---aagaagaagcatttgaaattgaagtagggattggacctgagaatttattt 10599611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 10661470 - 10661623
Alignment:
Q  12 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagt 111  Q
    |||||||||||| | |||||| |||||||||||||||||  |||||||||||||| || |||||||  ||| ||  |||||||| ||||   |  |||||    
T  10661470 caacatatagctgactaagttgagtggataaattgcctacaaaatttggcaagttacccccaaaatgattactggatatagaaatcactcttagtttagt 10661569  T
Q  112 -ataattgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaa 164  Q
     |   ||||||| | ||| ||||||||||||||||| |||||||||||||||||    
T  10661570 gaagtttgtcaaggttttcaaaaactccaaatccttagttgaattgtcacctaa 10661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 10764622 - 10764694
Alignment:
Q  116 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaa 188  Q
    |||||||| ||||||||||||| |||||| |||| |||||||||||||||| ||| | |||||||||||||||    
T  10764622 ttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaa 10764694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 10653584 - 10653655
Alignment:
Q  12 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 83  Q
    |||||||||||| | |||||| |||||||||||||||||  |||||||||||||| ||||||||||| ||||    
T  10653584 caacatatagctgactaagttgagtggataaattgcctacaaaatttggcaagttacctccaaaattattat 10653655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 317
Target Start/End: Complemental strand, 10610511 - 10610231
Alignment:
Q  35 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 133  Q
    |||||||||||||| ||||||||||||||  | |||||||| || |||||   ||||||||||  ||  |  ||| || | || |||||| |||||||||    
T  10610511 gtggataaattgccaatgaaatttggcaaactacctccaaacttattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaa 10610412  T
Q  134 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaa 233  Q
    |||| |||||  | |||||||||| ||| |||||||||||||||||| | ||| |    ||||||  || |    ||||| |||||||||||||||| ||    
T  10610411 actctaaatctatagttgaattgttaccgaaatagttgtattccaaactcagccagtaaagatctggtaacttctctagacttggaacttgtccaaccaa 10610312  T
Q  234 atagttttgaccgagatcaaata-ttgtaatgggagatgatgcatttgttatggaagtggggattggacctgagaattgatttcc 317  Q
    || ||||||||| | ||||| || |||||    | || || |||||||  ||||||   ||||||||||||||||||||||||||    
T  10610311 attgttttgacctaaatcaattatttgta----gggaagaagcatttgcaatggaaacagggattggacctgagaattgatttcc 10610231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 10748423 - 10748575
Alignment:
Q  35 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 133  Q
    ||||||||| |||| ||| ||||||||||  | |||||||| || |||||   |||||||| |||||  |  ||| || |||| |||||| | |||||||    
T  10748423 gtggataaactgccaatggaatttggcaaactacctccaaacttattattacatatagaaaccacttctagtttactacaatttgtcaaatactttaaaa 10748522  T
Q  134 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagc 186  Q
    |||| |||||  | |||||||||| ||| |||||||||| |||||||||||||    
T  10748523 actctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagc 10748575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 7191814 - 7191675
Alignment:
Q  27 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 125  Q
    |||||| |||||||||||| || ||| |||||||||| || ||||||||||| |||  |  |||||||| |||| | |  ||| || | || ||||| ||    
T  7191814 taagttgagtggataaattcccaatggaatttggcaaattacctccaaaattattaaaggatatagaaaacactagtagtttactacagtttgtcaagga 7191715  T
Q  126 ttttaaaaactccaaatcctttgttgaattgtcacctaaa 165  Q
    |||||||||||| |||||||| || ||||||| |||||||    
T  7191714 ttttaaaaactctaaatccttagtggaattgttacctaaa 7191675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 166
Target Start/End: Complemental strand, 10557720 - 10557589
Alignment:
Q  36 tggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaa 134  Q
    ||||||||||||||   |||||||||||  | ||||||||||| |||| |  |||||||  ||||||||||||| || | || ||||| |||||||||||    
T  10557720 tggataaattgcctgccaaatttggcaaactacctccaaaattattatgggatatagaacacacttgcaacttactacagttagtcaatgattttaaaaa 10557621  T
Q  135 ctccaaatcctttgttgaattgtcacctaaat 166  Q
       ||||||||| |||||||| ||||| ||||    
T  10557620 aatcaaatccttagttgaattttcaccaaaat 10557589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 10549588 - 10549467
Alignment:
Q  41 aaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaactcca 139  Q
    ||||| ||||||||| |||||||  | ||||||||||| |||| |  ||||||||   ||||||| ||| || |||| ||||| | ||||||||| || |    
T  10549588 aaattacctatgaaacttggcaaactacctccaaaattattatgggatatagaaaatgcttgcaaattactacaatttgtcaatggttttaaaaattcta 10549489  T
Q  140 aatcctttgttgaattgtcacc 161  Q
    ||||||| ||||||||||||||    
T  10549488 aatccttagttgaattgtcacc 10549467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 10579571 - 10579522
Alignment:
Q  274 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 323  Q
    |||||||  |||||||| ||||||||||| |||||||||||||| |||||    
T  10579571 gcatttgcaatggaagttgggattggaccagagaattgatttcctccaat 10579522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 10590072 - 10590121
Alignment:
Q  274 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 323  Q
    |||||||  |||||||| ||||||||||| |||||||||||||| |||||    
T  10590072 gcatttgcaatggaagttgggattggaccagagaattgatttcctccaat 10590121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 12956892 - 12956834
Alignment:
Q  25 aataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 83  Q
    ||||||||||||||||||||| |||||| |||||||||| | |||||||||||| ||||    
T  12956892 aataagttcagtggataaattccctatggaatttggcaaatggcctccaaaattattat 12956834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 12905999 - 12905840
Alignment:
Q  27 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 125  Q
    ||||||||||||| || ||||||||| |||||||||| |  ||||||||||| |||   | ||| |||||||| |  |  ||| |  |||| |||||| |    
T  12905999 taagttcagtggaaaagttgcctatggaatttggcaaatgtcctccaaaattattagaatctattgaaagcacgtatagtttactgcaatttgtcaaata 12905900  T
Q  126 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 185  Q
    |||||||||||| |||||||| |||||| ||| |||||||| |||| || ||||| ||||    
T  12905899 ttttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttag 12905840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 12931087 - 12930948
Alignment:
Q  28 aagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataa-ttgtcaaagat 126  Q
    ||||||||| ||||||||||||||| |||||||||| |  ||||||||||| ||||    ||| |||||||| |  |  ||| |  || |||||||| ||    
T  12931087 aagttcagtcgataaattgcctatggaatttggcaaatgacctccaaaattattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatat 12930988  T
Q  127 tttaaaaactccaaatcctttgttgaattgtcacctaaat 166  Q
    ||||||||||| |||||| | |||||||||| ||||||||    
T  12930987 tttaaaaactctaaatccatagttgaattgttacctaaat 12930948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 12947452 - 12947417
Alignment:
Q  28 aagttcagtggataaattgcctatgaaatttggcaa 63  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12947452 aagttcagtggataaattgcctatggaatttggcaa 12947417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 17924893 - 17924962
Alignment:
Q  116 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 185  Q
    |||||||| ||||||||||||| |||||| | |||||||| |||||||||| ||| | ||||||||||||    
T  17924893 ttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttag 17924962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 17924803 - 17924859
Alignment:
Q  27 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 83  Q
    ||||||||||||||||||| |||||| |||||||||| |  ||||||||||| ||||    
T  17924803 taagttcagtggataaattccctatggaatttggcaaatgacctccaaaattattat 17924859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 31468804 - 31468853
Alignment:
Q  274 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 323  Q
    ||||||| ||||||||| ||||||||||||||||||||||| || |||||    
T  31468804 gcatttgatatggaagttgggattggacctgagaattgattcccaccaat 31468853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University