View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9163_low_10 (Length: 384)
Name: NF9163_low_10
Description: NF9163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9163_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 40061358 - 40060980
Alignment:
| Q |
1 |
agggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagataaacgggcaaaaatttca |
100 |
Q |
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| T |
40061358 |
agggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattctatcctaagacgcgaaataagataaacgggcaaaaatttca |
40061259 |
T |
|
| Q |
101 |
atataaaccgcctctacctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaat |
200 |
Q |
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| T |
40061258 |
atataaaccgcctctacctctaggtttggaccaagagaagtaatcttaggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaat |
40061159 |
T |
|
| Q |
201 |
ctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaa--------------aaaacacaattgtccagtgtaattt |
286 |
Q |
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| T |
40061158 |
ctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaatatatattaaaaaacacaattgtccagtgtaattt |
40061059 |
T |
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| Q |
287 |
ctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccagtggtacattt |
365 |
Q |
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| T |
40061058 |
ctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccggtggtacattt |
40060980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 357
Target Start/End: Complemental strand, 40087228 - 40086887
Alignment:
| Q |
21 |
attgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagat-----aaacgggcaaaaatttcaatataaaccgcctct |
115 |
Q |
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| T |
40087228 |
attgacaaaccagatgagttttagttacaaaataaattatatcctaagacgcggaataagatgtttcaaacgaacaaaaatttcaatataaaccatctat |
40087129 |
T |
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| Q |
116 |
acctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgacccc |
215 |
Q |
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| T |
40087128 |
acctctaggtttggaccaagataagtaatcttgggttctgcggctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgacccc |
40087029 |
T |
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| Q |
216 |
acttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaacacaattgtccagtgtaatttctcttgtgcatataagaaataaactatgc |
315 |
Q |
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| T |
40087028 |
acttcggctgcctaataactcctgcagcatgtagcgaagatattaaaaaatccaatcgtccagtgtaatttctcttctacatataagaaataaactatcc |
40086929 |
T |
|
| Q |
316 |
atgtgatattattaatttatcttcttcgatgtattaccagtg |
357 |
Q |
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| T |
40086928 |
atgtgatattatcaatttatcttcttcgatgtattaccagtg |
40086887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 90 - 344
Target Start/End: Complemental strand, 40079393 - 40079134
Alignment:
| Q |
90 |
caaaaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggc |
189 |
Q |
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|||||||||||||| | ||| ||| ||||||||||||| |||||||||| | ||||||||| || |||||||||| ||||| ||||||||||||| ||| |
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| T |
40079393 |
caaaaatttcaatacataccacctatacctctaggttttgaccaagagatgaaatcttgggatcagtagctattagtgcttcttcacaaagctttatggc |
40079294 |
T |
|
| Q |
190 |
cttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaa-aaacac----aattgtccagtgtaat |
284 |
Q |
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| T |
40079293 |
cttgtgtacatctttaagatgaccccacttttgctgcctaataattcctgcagcgtatagtagagatattaaacacacacagaaaattgtccagtgtaat |
40079194 |
T |
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| Q |
285 |
ttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcga |
344 |
Q |
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| T |
40079193 |
ttctcttctaaataaaagaaaataactatgcgtgtaatattattaatttatcttcttcga |
40079134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 22014230 - 22014313
Alignment:
| Q |
158 |
gctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgca |
241 |
Q |
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| T |
22014230 |
gctatcaatgcttcttcacaaagctttatggccttgtgcaaatctttaagatgaccccatttgggctgtctaatatctcctgca |
22014313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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