View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9163_low_15 (Length: 347)
Name: NF9163_low_15
Description: NF9163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9163_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 93 - 328
Target Start/End: Complemental strand, 37636613 - 37636384
Alignment:
| Q |
93 |
attcacgagtgttttatgatttcaagtggggttctgttaatccgctttgtgtccagcttttacctttgccgacctctttttcagctggacagtacatatc |
192 |
Q |
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| T |
37636613 |
attcacgagtgttttatgatttcaagtgaggttctgttaatccgctttgtgtccagcttttacctttgccgacctctttttcagctggacagtacatatc |
37636514 |
T |
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| Q |
193 |
agtgtcacacttatataagggtagttaatcatcttaatcttcaataaaaagatgtacgtgaaaacaaaattcaaaattgtttgtatnnnnnnnctataaa |
292 |
Q |
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| T |
37636513 |
agtgtcacacttatataagggtagttaatca------tcttcaataaaaagatgtacgtgaaaacaaaattcaaaattgtttctataaaaaaactataaa |
37636420 |
T |
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| Q |
293 |
attttaacatttgagataactcatatgtacaaaacc |
328 |
Q |
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| T |
37636419 |
attttaacatctgagagaactcatctgtacaaaacc |
37636384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 37636726 - 37636644
Alignment:
| Q |
14 |
attattcttacatgccataaaactcgatgttttgtttttagaggagtttaatatgtgggat-caaataacacttagcaatatt |
95 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37636726 |
attattcttacatgccataaaacttgatgttttgtttttagaggagtttaatatgtgggatccaaataacacttagcaatatt |
37636644 |
T |
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