View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9163_low_19 (Length: 323)
Name: NF9163_low_19
Description: NF9163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9163_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 51804466 - 51804762
Alignment:
| Q |
8 |
ttcgtgttcaaccgcagacacatttttgccacaccnnnnnnncaagaacaaagcagcacctacaaaaatcaaaatcacagatacaccggccacccatata |
107 |
Q |
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| T |
51804466 |
ttcgtgttcaaccgcagacacatttttgccacacctttttttcaagaacaaagcagcacctacaaaaatcaaaatcacagatacaccggccacccatata |
51804565 |
T |
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| Q |
108 |
gtgttcatcttcttactcttgtaaccatccgaacataatggaaagtttctttgatcagatgaattagcattaaccggcatcatcacacataaaccaggat |
207 |
Q |
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| T |
51804566 |
gtgttcatcttcttactcttgtaaccatgtgaacataatggaaagtttctttgatcagatgaattagcattaaccggcatcatcacacataaaccaggat |
51804665 |
T |
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| Q |
208 |
tccctgcaaagctttcaactaaccctcctttaatcaatttaggaggaataggaccagaaagaagattgtgtgaaaagtttatagaattaggcaacaa |
304 |
Q |
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| T |
51804666 |
tccctgcaaagctttcaactaaccctcctttaatcaatttaggaggaataggaccagaaagaagattgtgtgaaaagtttatagaattaggcaacaa |
51804762 |
T |
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Back To:
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 20018195 - 20018039
Alignment:
| Q |
50 |
caagaacaaagcagcacctacaaaaatcaaaatcacagatacaccggccacccatatagtgttcatcttcttactcttgtaaccatccgaacataatgga |
149 |
Q |
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||||||||||||| | |||||||||| ||||| || ||||||| || ||||| |||||||| | ||||||||||||| ||||| || |||||| || |
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| T |
20018195 |
caagaacaaagcaactcctacaaaaaacaaaacaccaaatacaccagctacccaaatagtgttaactttcttactcttgtgaccatgtgagcataataga |
20018096 |
T |
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| Q |
150 |
a---agtttctttgatcagatgaattagcattaaccggcatcatcacacataaacca |
203 |
Q |
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| T |
20018095 |
atttttttttttttatcagatgaattagcatacactgacatcatcactcataaacca |
20018039 |
T |
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