View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9163_low_2 (Length: 605)

Name: NF9163_low_2
Description: NF9163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9163_low_2
NF9163_low_2
[»] chr8 (4 HSPs)
chr8 (11-592)||(41485400-41485976)
chr8 (161-419)||(41482263-41482522)
chr8 (11-133)||(41482134-41482258)
chr8 (423-526)||(41482706-41482809)
[»] chr2 (3 HSPs)
chr2 (11-170)||(45385559-45385716)
chr2 (452-576)||(45384964-45385088)
chr2 (326-419)||(45385302-45385393)
[»] chr3 (4 HSPs)
chr3 (11-78)||(5736243-5736310)
chr3 (11-78)||(5773355-5773422)
chr3 (11-81)||(5697587-5697660)
chr3 (545-585)||(5796172-5796212)
[»] chr1 (3 HSPs)
chr1 (226-302)||(20434878-20434953)
chr1 (24-70)||(20434495-20434541)
chr1 (16-52)||(20435055-20435091)


Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 11 - 592
Target Start/End: Original strand, 41485400 - 41485976
Alignment:
Q  11 gaacctgtgcatctctcaggga--atttctacttgctatgtttattgtggtgaagtgtgggaaacaacaattaacgatttaacagtagattgacaatatt 108  Q
    |||||||||||||||||||||   |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41485400 gaacctgtgcatctctcaggggggatttctacttgctatgtttattatggtgaagtgttggaaacaacaattaacgatttaacagtagattgacaatatt 41485499  T
Q  109 tattacatattagagaaccaagttgatttaatcccaagaacatcaaccatggaggctatatagatactgcaatacgatggaaagttattgaaggcaacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41485500 tattacatattagagaaccaagttgatttaatcccaagaacatcaaccatggaggctatatagatactgcaatacgatggaaagttattgaaggcaacaa 41485599  T
Q  209 tagtaataccttcgtgaatatagaaaaagaagggttatacaagaaaccttgtgaaaatgtgctaatgtacaaaattctgtcattatgtatgtctacagaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41485600 tagtaataccttcgtgaatatagaaaaagaagggttatacaagaaaccctgtgaaaatgtgctaatgtacaaaattctgtcattatgtatgtctacagaa 41485699  T
Q  309 nnnnnnncatccactttcttgcttaggatatttctcttcttaatattattgtgtatttggttttgataaattagtcactaacattctctgttcatctgca 408  Q
           |||||||||||||||||||||||||||||||  ||||| |      |||||||||||||||||||||||||||||||||||||||||||||||    
T  41485700 -ttttttcatccactttcttgcttaggatatttctcttaataatagt------tatttggttttgataaattagtcactaacattctctgttcatctgca 41485792  T
Q  409 aaaggaagcagtgacatattagccaagttaatattttggatgagtcaggttagagatgaaatagagcagcttatggatgacgatggtgatatagctgaaa 508  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41485793 aaaggaagcagtgccatattagccaagttaatattttggatgagtcaggttagagatgaaatagagcagcttatggatgacgatggtgatatagctgaaa 41485892  T
Q  509 tgtaccatatcgagaagaaattatggacgaaattggcattttatggagatcagtctatggttggatatggatcagttaatagtg 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41485893 tgtaccatatcgagaagaaattatggacgaaattggcattttatggagatcagtctgtggttggatatggatcagttaatagtg 41485976  T

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Target: chr8; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 161 - 419
Target Start/End: Original strand, 41482263 - 41482522
Alignment:
Q  161 aggctatatagatactgcaatacgatggaaagttattgaaggcaacaa-tagtaata------ccttcgtgaatatagaaaaagaagggttatacaagaa 253  Q
    ||||||||||  ||||||| || ||||||||||||||||||| ||| | ||||||||      ||||| |  |||||||||| |||||||||||||||||    
T  41482263 aggctatatacctactgcagtaggatggaaagttattgaaggaaaccagtagtaatagtatggccttcattgatatagaaaaggaagggttatacaagaa 41482362  T
Q  254 accttgtgaaaatgtgctaatgtacaaaattctgtcattatgtatgtctacagaannnnnnncatccactttcttgcttaggatatttctcttcttaata 353  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||  |||||    
T  41482363 accctgtgaatatgtgctaatgtacaaaattctgtcattatgtatgtctacagaatttttttcatccactttcttgcttaggatatttctcttaataata 41482462  T
Q  354 ttattgtgtatttggttttgataaattagtcactaacattctctgttcatctgcaaaaggaagcag 419  Q
     |      |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  41482463 gt------tatttggttttgataaattagtcagtaacattctctgttcatttgcaaaaggaagcag 41482522  T

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Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 41482134 - 41482258
Alignment:
Q  11 gaacctgtgcatctctcaggga--atttctacttgctatgtttattgtggtgaagtgtgggaaacaacaattaacgatttaacagtagattgacaatatt 108  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41482134 gaacctgtgcatctctcaggggggatttctacttgctatgtttattgtggtgaagtgtgggaaacaacaattaacgatttaacagtagattgacaatatc 41482233  T
Q  109 tattacatattagagaaccaagttg 133  Q
    |||||||||||||||||| ||||||    
T  41482234 tattacatattagagaactaagttg 41482258  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 423 - 526
Target Start/End: Original strand, 41482706 - 41482809
Alignment:
Q  423 catattagccaagttaatattttggatgagtcaggttagagatgaaatagagcagcttatggatgacgatggtgatatagctgaaatgtaccatatcgag 522  Q
    |||||||||  |||||||||| ||| || || || ||||||| ||||||||  |||||| |||||| ||||||||||| ||||||||||||| |||||||    
T  41482706 catattagctgagttaatattgtgggtgtgttagattagagacgaaatagaatagcttacggatgatgatggtgatatggctgaaatgtaccttatcgag 41482805  T
Q  523 aaga 526  Q
    ||||    
T  41482806 aaga 41482809  T

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Target: chr2 (Bit Score: 96; Significance: 9e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 45385716 - 45385559
Alignment:
Q  11 gaacctgtgcatctctcagggaatttctacttgctatgtttattgtggtgaagtgtgggaaacaacaattaacgatttaacagtagattgacaatattta 110  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  45385716 gaacctgtgcatctctcagggaatttctacttgctttgtt-attctggtgaaatgtgggaaacagcaattaacgatttaacagtggattgacaatattta 45385618  T
Q  111 ttacatattagagaaccaagttgatttaatcccaagaacatcaaccatggaggctatata 170  Q
     |||||||||||||||||||||||||| || |||   ||||| |||||||||| ||||||    
T  45385617 -tacatattagagaaccaagttgatttgatgccagagacatcgaccatggaggatatata 45385559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 452 - 576
Target Start/End: Complemental strand, 45385088 - 45384964
Alignment:
Q  452 gtcaggttagagatgaaatagagcagcttatggatgacgatggtgatatagctgaaatgtaccatatcgagaagaaattatggacgaaattggcatttta 551  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| || ||||||||||  | | | | ||||| |||||||    
T  45385088 gtcaggttagagacgaaatagagcagcttatggatgatgatggtgatatggctgaaatgtaccttaccgagaagaaaagacgaatggaattgtcatttta 45384989  T
Q  552 tggagatcagtctatggttggatat 576  Q
    |||||||||||||||||||||||||    
T  45384988 tggagatcagtctatggttggatat 45384964  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 419
Target Start/End: Complemental strand, 45385393 - 45385302
Alignment:
Q  326 cttgcttaggatatttctcttcttaatattattgtgtatttggttttgataaattagtcactaacattctctgttc-atctgcaaaaggaagcag 419  Q
    |||| |||| ||||||||||||   |||||||||| ||||||||||| | ||||| |||| ||||||||||| ||| || ||||||||| |||||    
T  45385393 cttgattagtatatttctcttc---atattattgtttatttggttttcacaaatttgtcagtaacattctctattctatttgcaaaaggcagcag 45385302  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 5736310 - 5736243
Alignment:
Q  11 gaacctgtgcatctctcagggaatttctacttgctatgtttattgtggtgaagtgtgggaaacaacaa 78  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  5736310 gaacctgtgcatctctcagggaatttctacttgccatgttaattgtggtgaagtgtgggaaacaacaa 5736243  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 5773422 - 5773355
Alignment:
Q  11 gaacctgtgcatctctcagggaatttctacttgctatgtttattgtggtgaagtgtgggaaacaacaa 78  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  5773422 gaacctgtgcatctctcagggaatttctacttgccatgttaattgtggtgaagtgtgggaaacaacaa 5773355  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 5697660 - 5697587
Alignment:
Q  11 gaacctgtgcatctctcagggaatttct---acttgctatgtttattgtggtgaagtgtgggaaacaacaatta 81  Q
    ||||||||| ||||||||||||||||||   |||||| ||||| |||||||| |||||||||||||||||||||    
T  5697660 gaacctgtgaatctctcagggaatttcttctacttgccatgttaattgtggtaaagtgtgggaaacaacaatta 5697587  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 545 - 585
Target Start/End: Complemental strand, 5796212 - 5796172
Alignment:
Q  545 cattttatggagatcagtctatggttggatatggatcagtt 585  Q
    |||||||||||||||||||| ||||||||||| || |||||    
T  5796212 cattttatggagatcagtctctggttggatatagaccagtt 5796172  T

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Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 20434953 - 20434878
Alignment:
Q  226 atatagaaaaagaagggttatacaagaaaccttgtgaaaatgtgctaatgtacaaaattctgtcattatgtatgtct 302  Q
    |||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||    
T  20434953 atatagaaaaagaagggtgatacaagaa-ccatgtgacaatgtgctaatgtacaaaattctgtcattgtgtatgtct 20434878  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 20434541 - 20434495
Alignment:
Q  24 tctcagggaatttctacttgctatgtttattgtggtgaagtgtggga 70  Q
    |||| ||||||||||||||||||||||||||||  ||||||||||||    
T  20434541 tctctgggaatttctacttgctatgtttattgtcctgaagtgtggga 20434495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 20435091 - 20435055
Alignment:
Q  16 tgtgcatctctcagggaatttctacttgctatgttta 52  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  20435091 tgtggatctctcagagaatttctacttgctatgttta 20435055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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