View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9163_low_20 (Length: 321)
Name: NF9163_low_20
Description: NF9163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9163_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 3598856 - 3598564
Alignment:
| Q |
18 |
tctttgacatgtactcaaatgtccgtatttcatcatccctatcaaagaaaatttccacaccctccccgtagatcctaacaagaacttttcgtgaggtttc |
117 |
Q |
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| T |
3598856 |
tctttgacatgtactcaaatgtccgtatttcatcatccctatcaaagaaaatttccacaccctccccgtagatcctaacaagaacttttcgtgaggtttc |
3598757 |
T |
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| Q |
118 |
ctcagttgtagctggccactttatttcaaatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcccat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598756 |
ctcagttgtagctggccactttatttcaaatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcccat |
3598657 |
T |
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| Q |
218 |
ttacctgctaatgatatcagaatctcctttgcttcttctggaaggcggtcagctttgctgcttacaggggtttctatggcatctggtttctct |
310 |
Q |
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| T |
3598656 |
ttacctgctaatgatatcagaatctcctttgcttcttctggaaggcggtcagctttgctgcttacaggggtttctatggcatctggtttctct |
3598564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 15547298 - 15547413
Alignment:
| Q |
146 |
aatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcccatttacctgctaatgatatcagaatctcct |
245 |
Q |
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||||||||||| ||||||||||| || ||||| || || | ||| |||||||||| | ||||| ||||||||| |||||||||| ||| ||||| | |
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| T |
15547298 |
aatacctcattggtcattgcccctttaagaggaataacttccaactcatttgcatccaatacattttcccatttatttgctaatgatttcaatatctctt |
15547397 |
T |
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| Q |
246 |
ttgcttcttctggaag |
261 |
Q |
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| T |
15547398 |
ttgcttcatctggaag |
15547413 |
T |
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