View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9163_low_22 (Length: 307)

Name: NF9163_low_22
Description: NF9163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9163_low_22
NF9163_low_22
[»] chr5 (18 HSPs)
chr5 (13-284)||(10217504-10217773)
chr5 (16-165)||(11049415-11049564)
chr5 (14-260)||(10603958-10604205)
chr5 (13-279)||(10747770-10748037)
chr5 (15-282)||(10610894-10611162)
chr5 (36-260)||(10763911-10764136)
chr5 (36-282)||(10741477-10741724)
chr5 (36-172)||(10717718-10717854)
chr5 (36-172)||(10601150-10601286)
chr5 (13-172)||(10564322-10564481)
chr5 (36-236)||(9837106-9837307)
chr5 (18-172)||(7192300-7192454)
chr5 (30-172)||(10652971-10653113)
chr5 (55-172)||(19606662-19606779)
chr5 (36-235)||(10558151-10558351)
chr5 (18-146)||(10660845-10660973)
chr5 (33-166)||(10550094-10550227)
chr5 (36-172)||(10589205-10589341)
[»] chr6 (5 HSPs)
chr6 (36-282)||(12947828-12948075)
chr6 (36-282)||(12906374-12906621)
chr6 (36-282)||(12931463-12931710)
chr6 (36-281)||(12957263-12957509)
chr6 (36-172)||(12898865-12899001)
[»] chr2 (1 HSPs)
chr2 (36-282)||(17924181-17924428)
[»] chr3 (1 HSPs)
chr3 (36-209)||(31467940-31468114)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 10217504 - 10217773
Alignment:
Q  13 cagagatattctgtatgacatttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217504 cagagatattctgtatgacatttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtat 10217603  T
Q  113 tgttccattgaaggagttcccttgcaaatgaaggtattccaagcttacgcattcaccaatatgataggaatatcaccaaacagattattttcagaaacat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  10217604 tgttccattgaaggagttcccttgcaaatgaaggtattccaagcttacgcattcacca--atgataggaatatcaccaaacagattattttcagaaacat 10217701  T
Q  213 ctagcttaccaatattttttagcatgccaagttctcttggcaagctactgctcaaaaagttctgtgacaact 284  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||||||||    
T  10217702 ctagcttaccaatattttttagcatgccaacttctcttggcaagctaccgctcaaaaaattatgtgacaact 10217773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 11049415 - 11049564
Alignment:
Q  16 agatattctgtatgacatttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgt 115  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11049415 agatattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgt 11049514  T
Q  116 tccattgaaggagttcccttgcaaatgaaggtattccaagcttacgcatt 165  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||    
T  11049515 tccattgaaggagttcccttgcaagagaaggtattcgaagcttacgcatt 11049564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 10604205 - 10603958
Alignment:
Q  14 agagatattctgtatgacatttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtatt 113  Q
    |||||||||||| |  ||||  ||||||| |||||| ||||||||||| ||||  |||||||||   ||||||||||| ||||| |||||||||||||||    
T  10604205 agagatattctgcaaaacatcaggaattggtccatacaattgatttcttgaaatatctaaatattgtagacctttgagagaagcaaaagaggatggtatt 10604106  T
Q  114 gttccattgaaggagttcccttgcaaatgaaggtattccaagcttacgcattcaccaata-tgataggaatatcaccaaacagattattttcagaaacat 212  Q
    ||||| ||||| ||||||||||||||| |||||||||| ||||||| ||||||||||||| |   |||||| || ||| ||| || ||||||||| ||||    
T  10604105 gttccgttgaatgagttcccttgcaaacgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgattttcagagacat 10604006  T
Q  213 ctagcttaccaatattttttagcatgccaagttctcttggcaagctac 260  Q
    ||| |  | |||||||||||||||| || | |||| |||| |||||||    
T  10604005 ctaaccaatcaatattttttagcatacccacttcttttggtaagctac 10603958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 10747770 - 10748037
Alignment:
Q  13 cagagatattctgtatgacatttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtat 112  Q
    |||||||||| || || ||||  |||||||| ||| | ||| ||||||| ||||||||||||| |  |||||||| ||| ||||||||||||||||||||    
T  10747770 cagagatattttgcataacatcaggaattgacccagacaatcgatttcttgaaaggtctaaatgttgaagaccttcgagagaagccaaagaggatggtat 10747869  T
Q  113 tgttccattgaaggagttcccttgcaaatgaaggtattccaagcttacgcattcaccaa-tatgataggaatatcaccaaacagattattttcagaaaca 211  Q
    ||||||||||||||||||||||||||  ||||||||||| |||  |  ||| ||||||| | |  |||||||||||||| | |||| ||| ||||| |||    
T  10747870 tgttccattgaaggagttcccttgcaggtgaaggtattctaaggctgtgcaatcaccaattgttgtaggaatatcaccagatagatgattctcagagaca 10747969  T
Q  212 tctagcttaccaatattttttagcatgccaagttctcttggcaagctactgctcaaaaagttctgtga 279  Q
    ||||||  | ||||||||||||| |  || | ||||||||| |||||||  ||||||||||| |||||    
T  10747970 tctagccaatcaatattttttagtaaacccacttctcttggtaagctaccactcaaaaagttatgtga 10748037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 10611162 - 10610894
Alignment:
Q  15 gagatattctgtatgacatttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattg 114  Q
    ||||||| ||| || ||||  |||||||||||| | ||||||||| | |||||||||||||||  |||||||||||| |||||||||||||| |||||||    
T  10611162 gagatatcctgcataacatcaggaattgatccagacaattgatttgttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggaaggtattg 10611063  T
Q  115 ttccattgaaggagttcccttgcaaatgaaggtattccaagcttacgcattcaccaa-tatgataggaatatcaccaaacagattattttcagaaacatc 213  Q
    |||||||||||||||| ||||||||| |||||||||| || ||||  |||||||||| | |  |||||| || |  | | || | ||| ||||| |||||    
T  10611062 ttccattgaaggagttaccttgcaaaagaaggtattctaaacttatacattcaccaactgttctaggaagataagaagatagttgattctcagatacatc 10610963  T
Q  214 tagcttaccaatattttttagcatgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 282  Q
    |||| ||  ||||||||||||||| || | ||||||||| |||||||  |||||| |||| || |||||    
T  10610962 tagcatattaatattttttagcatacccacttctcttggtaagctaccactcaaagagttatgcgacaa 10610894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 260
Target Start/End: Original strand, 10763911 - 10764136
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    |||||||||||| | ||||||||||| ||||||||||||  |  |||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||    
T  10763911 ggaattgatccagacaattgatttcttgaaaggtctaaactttgaagacctttgagagaagccatagaggatggtattgttccgctgaaggagttccctt 10764010  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaa-tatgataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttag 234  Q
    |||| ||||||||||| ||| ||  ||||||||||| | |  |||||||||||||| | |||| ||| ||||| | ||| ||| |  ||||||||||||     
T  10764011 gcaattgaaggtattctaaggttgtgcattcaccaattgttttaggaatatcaccagatagatgattctcagatagatccagcatgtcaatattttttaa 10764110  T
Q  235 catgccaagttctcttggcaagctac 260  Q
    ||| || | ||||||||| |||||||    
T  10764111 catacccacttctcttggtaagctac 10764136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 282
Target Start/End: Original strand, 10741477 - 10741724
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    |||||||||||| | ||||||||||| ||||||||||||  |  |||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||    
T  10741477 ggaattgatccagacaattgatttcttgaaaggtctaaactttgaagacctttgagagaagccatagaggatggtattgttccgctgaaggagttccctt 10741576  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaa-tatgataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttag 234  Q
    |||| ||||||||||| ||| ||  ||||||||||| | |  |||||||||||||| | |||  ||| ||||| | ||||||| |  ||||||||||||     
T  10741577 gcaattgaaggtattctaaggttgtgcattcaccaattgttctaggaatatcaccagatagacgattctcagatagatctagcatgtcaatattttttaa 10741676  T
Q  235 catgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 282  Q
    ||| || | ||||||||| | |||||  ||||||  ||| ||||||||    
T  10741677 catacccacttctcttggtatgctaccactcaaagtgttatgtgacaa 10741724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 10717718 - 10717854
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    ||||||| ||| || ||||||||||| |||||||||||||||   | | | ||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  10717718 ggaattggtccgtacaattgatttcttgaaaggtctaaatatcttaaagccttgagagaagccaaagaggatggtattgttccattgatggagttccctt 10717817  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaat 172  Q
     ||||||||| ||||||||||| | ||||||||||||    
T  10717818 ccaaatgaagatattccaagctcatgcattcaccaat 10717854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 10601286 - 10601150
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    ||||||| |||||| ||||||||||| ||||  |||||||||   ||||||||||| | |||||||||||||||||||||||| ||||| || ||| |||    
T  10601286 ggaattggtccatacaattgatttcttgaaatatctaaatattgtagacctttgagagcagccaaagaggatggtattgttccgttgaaagaattctctt 10601187  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaat 172  Q
    |||||||||||||||| ||||||||  ||||||||||    
T  10601186 gcaaatgaaggtattctaagcttacatattcaccaat 10601150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 10564481 - 10564322
Alignment:
Q  13 cagagatattctgtatgacatttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtat 112  Q
    |||||||||| || || ||||  |||||||||||| | ||||||||||| |||||||||||||||  |||||||||||| ||||||| |||||| |||||    
T  10564481 cagagatattttgcataacatcaggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccatagaggacggtat 10564382  T
Q  113 tgttccattgaaggagttcccttgcaaatgaaggtattccaagcttacgcattcaccaat 172  Q
    |||||  ||||||| ||||||||||||   ||| ||||| |||||||  ||||| |||||    
T  10564381 tgttctgttgaaggcgttcccttgcaacataagatattctaagcttatacattcgccaat 10564322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 236
Target Start/End: Original strand, 9837106 - 9837307
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaag-gagttccct 134  Q
    |||||||||||| | || |||||||| || | ||||||||||  |||| ||||||| || ||||||| ||| ||||| ||||| | |||| ||||||||     
T  9837106 ggaattgatccagacaactgatttctagacatgtctaaatattgaagaactttgagagatgccaaagtggaaggtatggttccgt-gaagagagttcccc 9837204  T
Q  135 tgcaaatgaaggtattccaagcttacgcattcaccaata-tgataggaatatcaccaaacagattattttcagaaacatctagcttaccaatatttttta 233  Q
    || || ||||||||||| || |||| ||||||||||||  | || ||||| |||||  |||||| ||||||||| ||||||||||||  |||||||||||    
T  9837205 tgtaagtgaaggtattctaaacttatgcattcaccaattgttattggaatgtcacccgacagatgattttcagagacatctagcttatgaatatttttta 9837304  T
Q  234 gca 236  Q
    |||    
T  9837305 gca 9837307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 7192454 - 7192300
Alignment:
Q  18 atattctgtatgacatttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttc 117  Q
    ||||||||||  ||||| ||||||| |||||| ||  ||||||| || ||||||||||||  ||||| ||| |  |||||||| ||||||||||| ||||    
T  7192454 atattctgtagaacattaggaattggtccatacaaccgatttcttgacaggtctaaatattgaagacttttaactgaagccaatgaggatggtatggttc 7192355  T
Q  118 cattgaaggagttcccttgcaaatgaaggtattccaagcttacgcattcaccaat 172  Q
    | ||||||||||| |||||||||   |||||||| |||| || |||||| |||||    
T  7192354 cgttgaaggagtttccttgcaaaaagaggtattctaagcgtatgcattcgccaat 7192300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 10652971 - 10653113
Alignment:
Q  30 acatttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagt 129  Q
    ||||||||||||| |||||| ||  ||||||| || | ||||||||||  ||||||||| || |||||||| | |||||| || ||||| ||||| ||||    
T  10652971 acatttggaattggtccatacaaccgatttcttgacaagtctaaatattgaagacctttaagtgaagccaatgtggatggaatggttccgttgaacgagt 10653070  T
Q  130 tcccttgcaaatgaaggtattccaagcttacgcattcaccaat 172  Q
    |||||||||||  ||||||||| |||  || ||||||||||||    
T  10653071 tcccttgcaaagaaaggtattctaagactatgcattcaccaat 10653113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 19606662 - 19606779
Alignment:
Q  55 gatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttcccttgcaaatgaaggtattccaa 154  Q
    ||||||| || ||||||||||||  ||||||| | || ||||| ||||||||||||||  |||| |  |||||||||||||| |||| ||| ||||| ||    
T  19606662 gatttcttgataggtctaaatatcgaagacctctaagagaagctaaagaggatggtatgattccgtgaaaggagttcccttgaaaataaagatattctaa 19606761  T
Q  155 gcttacgcattcaccaat 172  Q
    ||||| ||||||||||||    
T  19606762 gcttatgcattcaccaat 19606779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 10558351 - 10558151
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    |||||||||||| | ||||||||||| || | ||||||||||  ||||||| | |   ||||||||||||| |||||  ||  || |||||| || ||||    
T  10558351 ggaattgatccagacaattgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtatgatttgatggaaggaatttcctt 10558252  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaata-tgataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttag 234  Q
    |||||  ||||||||| ||||||  ||||| | ||||  | |||||||| |||||| ||| |||||| ||||| | ||||||||||  ||||||||||||    
T  10558251 gcaaaaaaaggtattctaagcttttgcattgatcaatggttataggaatttcaccagacaaattattctcagagaaatctagcttattaatattttttag 10558152  T
Q  235 c 235  Q
    |    
T  10558151 c 10558151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 10660845 - 10660973
Alignment:
Q  18 atattctgtatgacatttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttc 117  Q
    ||||||||||  ||||||||||| | |||| | ||| ||||||  || | ||||| ||||  ||||||||| || |||||||| ||||||||||| ||||    
T  10660845 atattctgtagaacatttggaatcggtccagacaatcgatttcctgacaagtctagatattgaagacctttaagtgaagccaatgaggatggtatggttc 10660944  T
Q  118 cattgaaggagttcccttgcaaatgaagg 146  Q
    | ||||| |||||||||||||||| ||||    
T  10660945 cgttgaaagagttcccttgcaaataaagg 10660973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 10550227 - 10550094
Alignment:
Q  33 tttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttcc 132  Q
    ||||||||||||||  | ||||| ||||| || ||||||||   |  |||||||||||| ||  ||||||||||||||||  |||||||||| || ||||    
T  10550227 tttggaattgatccggataattggtttcttgagaggtctaacactcgaagacctttgagagattccaaagaggatggtatgcttccattgaatgaattcc 10550128  T
Q  133 cttgcaaatgaaggtattccaagcttacgcattc 166  Q
    ||  ||||  ||||||||| ||||||| ||||||    
T  10550127 ctgtcaaaataaggtattctaagcttaagcattc 10550094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 10589205 - 10589341
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    |||||||||||| | || |||||||| || | ||||||||||  |||||||||||| || ||||||| | | |||||||||||   |||   ||| ||||    
T  10589205 ggaattgatccagacaactgatttcttgacatgtctaaatattgaagacctttgagagatgccaaagtgaaaggtattgttccgaggaaaaggtttcctt 10589304  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaat 172  Q
    |||||||||||||||| ||| ||| ||| || |||||    
T  10589305 gcaaatgaaggtattctaagtttatgcaatccccaat 10589341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 36 - 282
Target Start/End: Complemental strand, 12948075 - 12947828
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    |||||||||||| | ||||||||||| |||||||||||||||  ||||||||||||  ||| ||||||||| ||||||||||| ||||||||||||| ||    
T  12948075 ggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagaaaagtcaaagaggacggtattgttccgttgaaggagttccttt 12947976  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaatat-gataggaatatcaccaaacagattattttcagaaacatcta--gcttaccaatatttttt 232  Q
    |||||||||  ||||| ||||||   ||||||||||| |   |||||||||||||| | |||| ||| ||||| |||||||  ||||  |||||||||||    
T  12947975 gcaaatgaatatattctaagcttgtacattcaccaatttctctaggaatatcaccagatagatgattctcagagacatctaatgctt--caatatttttt 12947878  T
Q  233 agcatgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 282  Q
    | ||| || | ||||||||| |||||||  |||||| |||| ||||||||    
T  12947877 aacatacccacttctcttggtaagctaccactcaaagagttatgtgacaa 12947828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 282
Target Start/End: Complemental strand, 12906621 - 12906374
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    |||||||||||| | ||||||||||| |||||||||||||||  |||||||||||| |||||||||||||| ||||||||||| || |||||||||| ||    
T  12906621 ggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttccgttaaaggagttccttt 12906522  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaatat-gataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttag 234  Q
    |||||||||  ||||| ||||||   ||||||||||| |   | |||||||||||| | |||| ||| ||||| |||||||  |   ||||||||||||     
T  12906521 gcaaatgaatatattctaagcttgtacattcaccaatttctctcggaatatcaccagatagatgattctcagagacatctaattctgcaatattttttaa 12906422  T
Q  235 catgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 282  Q
    ||| || | ||||||||| ||  ||| ||||||| |||| ||||||||    
T  12906421 catacccacttctcttggtaaagtaccgctcaaagagttatgtgacaa 12906374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 282
Target Start/End: Complemental strand, 12931710 - 12931463
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    |||||||||||| | ||||||||||| |||||||||||||||  ||||||||||||  ||| ||||||||| ||||||||||| ||||||||||||| ||    
T  12931710 ggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagaaaagtcaaagaggacggtattgttccgttgaaggagttccttt 12931611  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaatat-gataggaatatcaccaaacagattattttcagaaacatcta--gcttaccaatatttttt 232  Q
    |||||||||  ||||| ||||||   ||||||||||| |   |||||||||||||| | |||| ||| ||||| |||||||  ||||  |||||||||||    
T  12931610 gcaaatgaatatattctaagcttgtacattcaccaatttctctaggaatatcaccagatagatgattctcagagacatctaatgctt--caatatttttt 12931513  T
Q  233 agcatgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 282  Q
    | ||| || | ||||||||| |||||||  || ||| |||| ||||||||    
T  12931512 aacatacccacttctcttggtaagctaccacttaaagagttatgtgacaa 12931463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 281
Target Start/End: Complemental strand, 12957509 - 12957263
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    |||||||||||| | ||||||||||| |||| ||||||||||  |||||||||||| ||||| |||||||| ||||||||||||||||||  ||||| ||    
T  12957509 ggaattgatccagacaattgatttcttgaaacgtctaaatattgaagacctttgagagaagctaaagaggacggtattgttccattgaagatgttccttt 12957410  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaatat-gataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttag 234  Q
    ||||| |||  ||||| ||| ||   ||||||||||| |   | |||||||||||| | |||| ||| ||||| |||||||  |   ||||||||||||     
T  12957409 gcaaacgaatatattctaagattgtacattcaccaatttctctcggaatatcaccagatagatgattctcagagacatctaaatcttcaatattttttaa 12957310  T
Q  235 catgccaagttctcttggcaagctactgctcaaaaagttctgtgaca 281  Q
    ||| || | |||| |||| ||| ||| ||||||| |||| |||||||    
T  12957309 catacccacttctgttggtaaggtaccgctcaaagagttatgtgaca 12957263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 12899001 - 12898865
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    |||||||||||| | ||||||||||| |||| ||||||||||  ||||||||| || |||||||||||||| ||||||||||| ||||||||||||| ||    
T  12899001 ggaattgatccagacaattgatttcttgaaaagtctaaatattgaagacctttaagagaagccaaagaggacggtattgttccgttgaaggagttccttt 12898902  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaat 172  Q
    ||||| |||  ||||| | ||||   |||||||||||    
T  12898901 gcaaaagaatatattctatgcttgtacattcaccaat 12898865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 36 - 282
Target Start/End: Original strand, 17924181 - 17924428
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    |||||||||||| | ||||||||||| |||||||||||||||  |||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||    
T  17924181 ggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttccgttgaaggagttccttt 17924280  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaatat-gataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttag 234  Q
    |||||||||  ||||| |||||||  ||||||||||| |   | |||||||||||| | |||| ||| ||||| |||||||  |   ||||||||||||     
T  17924281 gcaaatgaatatattctaagcttatacattcaccaatttctctcggaatatcaccagatagatgattctcagagacatctaattcttcaatattttttaa 17924380  T
Q  235 catgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 282  Q
    ||| |  | ||||||||| ||| |||  |||||| |||| ||||||||    
T  17924381 catactcacttctcttggtaaggtaccactcaaagagttatgtgacaa 17924428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 209
Target Start/End: Original strand, 31467940 - 31468114
Alignment:
Q  36 ggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttccattgaaggagttccctt 135  Q
    |||||||||||| | || || ||||  || |||||||||| |  ||| ||||| || ||||| | ||||| ||||||   ||||| |||||| || ||||    
T  31467940 ggaattgatccagacaagtggtttcgtgataggtctaaatgttgaaggcctttcagtgaagctagagaggttggtatgactccatggaaggaatttcctt 31468039  T
Q  136 gcaaatgaaggtattccaagcttacgcattcaccaat-atgataggaatatcaccaaacagattattttcagaaa 209  Q
    |||||| |||||| ||||||||||||||||| |||||  |  |||||||||||||| | |||||||| |||||||    
T  31468040 gcaaataaaggtactccaagcttacgcattccccaatcgttctaggaatatcaccagatagattattctcagaaa 31468114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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