View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9163_low_5 (Length: 494)
Name: NF9163_low_5
Description: NF9163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9163_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 47840719 - 47840279
Alignment:
| Q |
19 |
agtaaaacaacatagaaaactaattctactccttaatgccatctggaacattataaaacaggaattaacacaaaaaacaccatctgaaataaataatagc |
118 |
Q |
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| T |
47840719 |
agtaaaacaacatagaaaactaattctactcctcaatgccatctggaacattataaaacaggaattaacacaaaaaacaccatctgaaataaataatagc |
47840620 |
T |
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| Q |
119 |
agctccagaaccctgaagcaacacaaataaaccaagaccatggaaaacgaattatacgatccactagctccgaaatattagccacttttccatttaaaag |
218 |
Q |
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| T |
47840619 |
agctccagaaccctgaagcaacacaaataaaccaagaccatggaaaatgaattatacgatccactagctccgaaatattagccacttttccatttaaaag |
47840520 |
T |
|
| Q |
219 |
gacatcatttttctccaaccatatgcaccacacgtccacaacgttgttacacaaattaaatgagaaactcttttacctctcttcccttttccgactgagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47840519 |
gacatcatttttctccaaccatatgcaccacacgtccacaacgttgttacacaaattaaatgagaaactcttttacctctcttcccttttccgactgagt |
47840420 |
T |
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| Q |
319 |
tgaacaacaaggaatttttctatcaactcttcacgccatcctattgcattccacttcatccacttaaaaatcaaattccgaatctccttggttttcggat |
418 |
Q |
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| T |
47840419 |
tgaacaacaaggaatttttctatcaactcttcacgccatcctattgcattccacttcatccacttaaaaatcaaattccgaatctccttggttttcggat |
47840320 |
T |
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| Q |
419 |
acattacaaacaaatgtccctctgtctcgatttcattaaag |
459 |
Q |
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| T |
47840319 |
acattacaaacaaatgtccctctgtctcgatttcattaaag |
47840279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 26322692 - 26322641
Alignment:
| Q |
339 |
tatcaactcttcacgccatcctattgcattccacttcatccacttaaaaatc |
390 |
Q |
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| T |
26322692 |
tatcaactcttctccccaacctattgcattccacttcatccaattaaaaatc |
26322641 |
T |
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