View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9163_low_8 (Length: 384)
Name: NF9163_low_8
Description: NF9163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9163_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 5116170 - 5115922
Alignment:
| Q |
18 |
aagaagagatacctctttagtaagttttgtgacacatttatgacattttcaaagtggatactaactataggatttagtctcttaaatactcagttttaga |
117 |
Q |
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| T |
5116170 |
aagaagagatacctctttagtaatttttgtgacacatttatgacattttcaaagtggatactaactataggatttagtctcttaaatactcagtttcaga |
5116071 |
T |
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| Q |
118 |
tctagagaaatttgaattgcctttataaagagataattcaatttttagtttgtttacatttattgatacttgatattgtcttaatacattcaggatgatc |
217 |
Q |
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| T |
5116070 |
tctagagaaatttcaattgcctttataaagagataattcaatttttagtttgtttacatttattgatacttgatattgtttcaatacattcaggatgatc |
5115971 |
T |
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| Q |
218 |
caaaaactatgaggtcagtactggagttacatgagaatgttggtgtgaa |
266 |
Q |
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| T |
5115970 |
caaaaactatgaggttggtattggagttacatgagaatgttggggtgaa |
5115922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 295 - 372
Target Start/End: Complemental strand, 5115925 - 5115848
Alignment:
| Q |
295 |
tgaattgatgatattgtagggccatcattatcaagaaaatgatatgtcttgttcctcttattgggcttgaaacaccaa |
372 |
Q |
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| T |
5115925 |
tgaattgatgatattgtagggccatcattgtcaagaaaatgatatgtcttgttcctgttattgggcttgaaacaccaa |
5115848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 40804391 - 40804338
Alignment:
| Q |
319 |
tcattatcaagaaaatgatatgtcttgttcctcttattgggcttgaaacaccaa |
372 |
Q |
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| T |
40804391 |
tcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaa |
40804338 |
T |
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