View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_high_11 (Length: 389)
Name: NF9164_high_11
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 48970467 - 48970108
Alignment:
| Q |
19 |
gttcattcatgacacagtataaaagattgaatttttgaggcaaagtaaaacatacacaagtcttggtacatattttcagtctgatctaatcttttccctg |
118 |
Q |
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| T |
48970467 |
gttcattcatgacacagtataaaaggttgaatttttgaggcaaagtaaaacatacacaagtcttggtacatattttcagtttgatataatcttttccctg |
48970368 |
T |
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| Q |
119 |
ggcactgcagcgacttgagagttacttagcaaaggtggaacaggcacctagaacgtctatgcgaactgcgcttgctccatgtatgaaagaattggttggg |
218 |
Q |
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| T |
48970367 |
ggcactgcagcgacttgagagttacttagcaaaggtggaacaggcacctagaacgtctatgcgaactgcgcttgctccatgtatgaaagaattggttggg |
48970268 |
T |
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| Q |
219 |
gataaacttctaaggcatccggatccggatgtgaaagctgcacttgccgcttgcatcagtgaaatcacaagaatctctgcacccgatactccttacgatg |
318 |
Q |
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| T |
48970267 |
aataaacttctaaggcatccggatccggatgtgaaagctgcacttgccgcttgcatcagtgaaatcacaagaatctctgcacccgatactccttacgatg |
48970168 |
T |
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| Q |
319 |
acgatcaaatgaaggtgtgtata--nnnnnnnngtgctacagtttcaatggcctgtctgt |
376 |
Q |
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| T |
48970167 |
acgatcaaatgaaggtgtgtataatttttttttgtgctacagtttcaatggcctgtctgt |
48970108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 335
Target Start/End: Original strand, 3032471 - 3032587
Alignment:
| Q |
219 |
gataaacttctaaggcatccggatccggatgtgaaagctgcacttgccgcttgcatcagtgaaatcacaagaatctctgcacccgatactccttacgatg |
318 |
Q |
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| T |
3032471 |
gataaacttataaagcattcagatgctgatgtcaaagtggctcttgcctcctgcttcagtgagataacaagaatcactgcacctgatgctccttatgatg |
3032570 |
T |
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| Q |
319 |
acgatcaaatgaaggtg |
335 |
Q |
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| T |
3032571 |
atggtcaaatgaaggtg |
3032587 |
T |
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