View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9164_high_12 (Length: 389)
Name: NF9164_high_12
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_high_12 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Complemental strand, 48368347 - 48367978
Alignment:
| Q |
20 |
tcacatatatatttggtataacccttatgaatttcaatcaataaaaaagaacgtgttgaaacttgtgttaaagagtgtgttggtggccttattattatgg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48368347 |
tcacatatatatttggtataacccttatgaatttcaatcaataaaaaagaacgtgttgaaacttgtgttaaagagtgtgttggtggccttattattatgg |
48368248 |
T |
|
| Q |
120 |
ttttctttatagtgctacacaatgtgcctgccagcatcacattcgcagtatgaatgaagaaaaaagtagttgtggtccttggtagtacatagtactgatt |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48368247 |
ctttctttatagtactacacaatgtgcctgccagcatcacattcgcagtatgaatgaagaaaaaagtagttgtggtccttggtagtacatagtactgatt |
48368148 |
T |
|
| Q |
220 |
cattcatcagttaatgtgaatgtaccaaacaaaagtaaattaaccggacaataattgagtacttacctgttggagtggtcataacaatttcatactcttc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48368147 |
cattcatcagttaatgtgaatgtaccaaacaaaagtaaattaaccggacaataattgagtacttacctgttggagtggtcataacaatttcatactcttc |
48368048 |
T |
|
| Q |
320 |
accaactttaacctcagtgagtcccactggctgaggattaacacaaaggaaagtattttcattctcaagc |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48368047 |
accaactttaacctcagtgagtcccactggctgaggattaacacaaaggaaagtattttcattctcaagc |
48367978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 277 - 374
Target Start/End: Original strand, 18045378 - 18045475
Alignment:
| Q |
277 |
agtacttacctgttggagtggtcataacaatttcatactcttcaccaactttaacctcagtgagtcccactggctgaggattaacacaaaggaaagta |
374 |
Q |
| |
|
|||||||||||| || | |||||| |||||||||||| |||| |||||| || |||||||||||||||| ||||||||||| | |||||||||||||| |
|
|
| T |
18045378 |
agtacttacctgctgaattggtcacaacaatttcatattctttaccaaccttcacctcagtgagtcccattggctgaggatcagcacaaaggaaagta |
18045475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 277 - 367
Target Start/End: Original strand, 13979521 - 13979611
Alignment:
| Q |
277 |
agtacttacctgttggagtggtcataacaatttcatactcttcaccaactttaacctcagtgagtcccactggctgaggattaacacaaag |
367 |
Q |
| |
|
|||| ||||||| || | |||||| |||||||||||| ||||||||||| || |||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
13979521 |
agtatttacctgctgaattggtcagaacaatttcatattcttcaccaaccttcacctcagtgagtcccactggatgaggatcaacacaaag |
13979611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University