View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_high_20 (Length: 318)
Name: NF9164_high_20
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 7245114 - 7244842
Alignment:
| Q |
15 |
tcaaccatcaattatagaacactatgcagaatggaaaaaatcactatagaat-gcaaccaaaataaagttttcattgattcaccaacaagagtacattaa |
113 |
Q |
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| T |
7245114 |
tcaaccatcaatta-agtacactatgtagaatggaaaaaatcattatagaattgcaaccaaaataaagttttcattgattcaccaacaagagtacattaa |
7245016 |
T |
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| Q |
114 |
ggcaaggtaaaactaatcatnnnnnnnnnnnnnctaagaattcattaattaaacggcatgtaggccataagattgtaaaggtaggatcccgtcccacagc |
213 |
Q |
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| T |
7245015 |
ggcaaggtaaaactaatcataaaaataaaaaa-ctaagaattctttaattaaacggcatctaggccataagattgtgaaggtaggatcccgccccacagt |
7244917 |
T |
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| Q |
214 |
caatccattcagcttgaaagtcatcgttccgattttgatcaatccattcagcttgagagctatcactccactttg |
288 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7244916 |
caatccatttagctagaaagtcatcgttccgattttgatcaatccattcagcttgagagctatcactccactttg |
7244842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 7323254 - 7323357
Alignment:
| Q |
152 |
aattcattaattaaacggcatgt-aggccataagattgtaaaggtaggatcccgtcccacagccaatccattcagcttgaaagtcatcgttccgattttg |
250 |
Q |
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||||||| |||||||||||| | ||||||| ||||||| |||||||||||||||||| ||| ||||||| |||||| ||||||| || ||||| | ||| |
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| T |
7323254 |
aattcatagattaaacggcatattaggccatgagattgtgaaggtaggatcccgtcccgcagtcaatccactcagctagaaagtcgtcattccggtcttg |
7323353 |
T |
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| Q |
251 |
atca |
254 |
Q |
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|||| |
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| T |
7323354 |
atca |
7323357 |
T |
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