View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_high_24 (Length: 272)
Name: NF9164_high_24
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 32236725 - 32236471
Alignment:
| Q |
1 |
tcagtaaacttgagaactgattctatatgttaccgcacaagctagaaatattagcttttgtagaattgactttaggattggaatcaattctaaatttgaa |
100 |
Q |
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| T |
32236725 |
tcagtaaatttgagaattgattctatatgttaccgcacaagctagaaatattagcttttgtagaattgactttaggattggaatcaattctaaatttgaa |
32236626 |
T |
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| Q |
101 |
agccaaacatataaaattatgatcaaatcacgtttgactaaccccaaacgtgattctgggaagtacattcgtggaaacaaaacataagtttaacatgtgt |
200 |
Q |
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| T |
32236625 |
agccaaacataaaaaattatgatcaaatcacgtttgactaaccccaaacgtgattctgggaagtacattcgtggaaac-aaacataagtttaacatgtgt |
32236527 |
T |
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| Q |
201 |
ttggaacaacggtttttaggaaaatcacgtcagcctgaaagtttagttttgtagct |
256 |
Q |
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| T |
32236526 |
ttggaacaacggtttttaggaaaatcacgtgagcctgaaagcttagttttgtagct |
32236471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 34933368 - 34933308
Alignment:
| Q |
100 |
aagccaaacatataaaattatgatcaaatcacgtttgactaaccccaaacgtgattctggga |
161 |
Q |
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| T |
34933368 |
aagccaaacataaaaatttatgatcaaatcacatttgactaa-cccaaacatgattttggga |
34933308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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