View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9164_high_3 (Length: 648)

Name: NF9164_high_3
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9164_high_3
NF9164_high_3
[»] chr8 (7 HSPs)
chr8 (169-625)||(18314330-18314785)
chr8 (487-603)||(18318652-18318768)
chr8 (478-608)||(14004069-14004199)
chr8 (492-608)||(32151894-32152010)
chr8 (427-612)||(17642884-17643069)
chr8 (413-521)||(17635591-17635699)
chr8 (477-518)||(34935986-34936027)
[»] chr7 (6 HSPs)
chr7 (67-371)||(8368196-8368505)
chr7 (431-521)||(10169003-10169093)
chr7 (431-521)||(10176528-10176618)
chr7 (489-621)||(7977786-7977918)
chr7 (470-521)||(10615726-10615777)
chr7 (406-447)||(15091527-15091568)
[»] chr5 (8 HSPs)
chr5 (67-371)||(9849173-9849478)
chr5 (148-291)||(9843129-9843272)
chr5 (161-312)||(40280424-40280576)
chr5 (286-371)||(9844638-9844723)
chr5 (500-605)||(28695545-28695650)
chr5 (545-612)||(28673340-28673407)
chr5 (554-614)||(29021717-29021777)
chr5 (557-625)||(28662036-28662104)
[»] chr1 (5 HSPs)
chr1 (148-371)||(25189541-25189764)
chr1 (465-521)||(19467418-19467474)
chr1 (161-372)||(27487938-27488149)
chr1 (161-287)||(27480586-27480712)
chr1 (462-608)||(7555124-7555270)
[»] chr4 (20 HSPs)
chr4 (462-625)||(8186343-8186506)
chr4 (216-329)||(23871996-23872109)
chr4 (496-612)||(7225179-7225294)
chr4 (427-521)||(553772-553866)
chr4 (569-618)||(1547794-1547843)
chr4 (558-619)||(2367988-2368049)
chr4 (558-619)||(2373554-2373615)
chr4 (558-603)||(5106639-5106684)
chr4 (558-619)||(12124507-12124568)
chr4 (492-608)||(1755479-1755595)
chr4 (558-603)||(2518911-2518956)
chr4 (558-611)||(2621488-2621541)
chr4 (161-210)||(23871580-23871629)
chr4 (560-608)||(2363162-2363210)
chr4 (464-521)||(661871-661928)
chr4 (558-603)||(2477261-2477306)
chr4 (558-603)||(2533991-2534036)
chr4 (480-517)||(55907677-55907714)
chr4 (559-599)||(2467224-2467264)
chr4 (558-602)||(5035301-5035345)
[»] scaffold0655 (1 HSPs)
scaffold0655 (302-371)||(94-163)
[»] scaffold1155 (1 HSPs)
scaffold1155 (413-517)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (413-517)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (413-517)||(30584-30688)
[»] chr3 (2 HSPs)
chr3 (568-619)||(51763489-51763540)
chr3 (412-525)||(51120590-51120703)
[»] chr6 (3 HSPs)
chr6 (470-521)||(6593923-6593974)
chr6 (511-609)||(6432758-6432856)
chr6 (568-608)||(9412050-9412090)
[»] chr2 (2 HSPs)
chr2 (67-114)||(4318375-4318421)
chr2 (480-518)||(1036613-1036651)


Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 169 - 625
Target Start/End: Original strand, 18314330 - 18314785
Alignment:
Q  169 atagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaagcatagga 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18314330 atagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatgtacctagaagcatagga 18314429  T
Q  269 taataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcgtgatgca 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18314430 taataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaggattttcatctttctgtttttcttcgtgatgca 18314529  T
Q  369 atacctcacgtgctatgaagatgacctcaacacgatcctctgtcaaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccacc 468  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  18314530 atacctcacgtgctatgaa-atgacctcaacacgatcctctgtcaaatctctcttttcccattgaaactcaaatgactcgatctctcctgtcaacccacc 18314628  T
Q  469 attcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgatctcttcc 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||    
T  18314629 attcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttcttacattcaatctctccatggcactgatctcttcc 18314728  T
Q  569 tcattgctgattgtttccctttgctcgaagaactcgaccttagttaccccaaagagt 625  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18314729 tcattgctgattgtttccctttgctcgaagaactcgaccttagttaccccaaagagt 18314785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 487 - 603
Target Start/End: Original strand, 18318652 - 18318768
Alignment:
Q  487 cgagttttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgatctcttcctcattgctgattgtttcc 586  Q
    ||||||||||   |||||||||||||||||||||||||| ||||||||  | |||||| |||  || ||||| |||||||||||||||| ||||||||||    
T  18318652 cgagttttctgcaaaaatattacaactttgacctcactcacatgttctggccttcaatgtctcaatagcacttatctcttcctcattgcagattgtttcc 18318751  T
Q  587 ctttgctcgaagaactc 603  Q
    |||| || |||||||||    
T  18318752 ctttccttgaagaactc 18318768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 478 - 608
Target Start/End: Complemental strand, 14004199 - 14004069
Alignment:
Q  478 aatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgatctcttcctcattgctg 577  Q
    ||||| || |||| ||||||||| || ||||||||||||||||||||    |||||  || || | |||||| || |||||||||||   ||||||||||    
T  14004199 aatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctg 14004100  T
Q  578 attgtttccctttgctcgaagaactcgacct 608  Q
    ||||||| |||||||| ||||||||||||||    
T  14004099 attgttttcctttgctagaagaactcgacct 14004069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 492 - 608
Target Start/End: Complemental strand, 32152010 - 32151894
Alignment:
Q  492 tttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgatctcttcctcattgctgattgtttccctttg 591  Q
    |||||| ||||| ||||||||||||||||| ||| | |||||||   || | ||| |  ||||||| ||  | ||||||||||| |||||||||||||||    
T  32152010 tttctcccaaaacattacaactttgacctctctcacttgttctcgtatttattctttcaatggcaccgacttgttcctcattgccgattgtttccctttg 32151911  T
Q  592 ctcgaagaactcgacct 608  Q
    ||||||||||| |||||    
T  32151910 ctcgaagaacttgacct 32151894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 612
Target Start/End: Original strand, 17642884 - 17643069
Alignment:
Q  427 ccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactct 526  Q
    |||| |||||||| ||||||| ||||||||   |  | |||||||||| | ||||| |||| || |||||| || |||||||||||||||||||| |||     
T  17642884 ccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctca 17642983  T
Q  527 catgttctcacgttcaatctcttcatggcactgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagt 612  Q
    | ||||| ||| |   |  ||| | | || |||| ||   |||||| |||||||||||||||||||| ||||||||||| ||||||    
T  17642984 cttgttcccacatgggaaatctccgtagctctgaccttaccctcatcgctgattgtttccctttgctagaagaactcgatcttagt 17643069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 521
Target Start/End: Original strand, 17635591 - 17635699
Alignment:
Q  413 aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac 512  Q
    ||||||||| ||| |||| |||||||| ||||||| |||| |||   | || |||||||||  | ||||| ||||||| |||||| |  |||||||||||    
T  17635591 aaatctctccttttccattgaaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaac 17635690  T
Q  513 tttgacctc 521  Q
    |||||||||    
T  17635691 tttgacctc 17635699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 518
Target Start/End: Original strand, 34935986 - 34936027
Alignment:
Q  477 aaatggcttacgagttttctctcaaaatattacaactttgac 518  Q
    |||||| || ||||||||||| ||||||||||||||||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgac 34936027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 240; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 67 - 371
Target Start/End: Original strand, 8368196 - 8368505
Alignment:
Q  67 ctcaagcatcaatggcggaaaatgtgtaactgaatcgtaactaactctctctct--aagagagagaaaaaggct-ctgataccatattatgaaaagtgaa 163  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||   ||||||||||||||||| |||||||    
T  8368196 ctcaagcatcaatggcggaaaatgtgtaactgaaccgtaactaactctctctctctaagagagagaaaaaggaaactgataccatattatgagaagtgaa 8368295  T
Q  164 atggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaagca 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  8368296 atggaatagaaattatgattctcattgattgaattagcttgtacaaccgttatttataggttgttataacctcatgcctactaacatgtacctagaagca 8368395  T
Q  264 taggataataactctgtaactaac--taaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcg 361  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8368396 taggataataactctgtaactaactataaactattctaagctagttactagccagacaagctattacactttaggattttcatctttctgtttttcttcg 8368495  T
Q  362 tgatgcaata 371  Q
    ||||||||||    
T  8368496 tgatgcaata 8368505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 431 - 521
Target Start/End: Original strand, 10169003 - 10169093
Alignment:
Q  431 agaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 521  Q
    ||||||||| |||||||||| | ||||  | |  |||||||||||||||||| || |||||||||||||||||||||| ||||||||||||    
T  10169003 agaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctc 10169093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 431 - 521
Target Start/End: Original strand, 10176528 - 10176618
Alignment:
Q  431 agaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 521  Q
    ||||||||| |||||||||| | ||||  | |  |||||||||||||||||| || |||||||||||||||||||||| ||||||||||||    
T  10176528 agaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctc 10176618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 621
Target Start/End: Complemental strand, 7977918 - 7977786
Alignment:
Q  489 agttttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgatctcttcctcattgctgattgtttccct 588  Q
    ||||||||| ||||||||| |||||||||||||||||  ||||||| || || ||||| || ||  ||   |  | || ||||| || ||||||||||||    
T  7977918 agttttctcccaaaatattgcaactttgacctcactcaaatgttctaacattgaatctattaatatcaaccacatgtttctcatagcagattgtttccct 7977819  T
Q  589 ttgctcgaagaactcgaccttagttaccccaaa 621  Q
    ||||| |||||||||||||| ||| ||| ||||    
T  7977818 ttgcttgaagaactcgacctaagtaacctcaaa 7977786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 521
Target Start/End: Complemental strand, 10615777 - 10615726
Alignment:
Q  470 ttcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 521  Q
    ||||||||||||| ||||||| |||||| ||||| |||||||||||||||||    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctc 10615726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 15091527 - 15091568
Alignment:
Q  406 ctctgtcaaatctctcttttcccatagaaactcaaatcactc 447  Q
    ||||||||||||||  ||||||||| ||||||||||||||||    
T  15091527 ctctgtcaaatctcaattttcccattgaaactcaaatcactc 15091568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 67 - 371
Target Start/End: Original strand, 9849173 - 9849478
Alignment:
Q  67 ctcaagcatcaatggcggaaaatgtgtaactgaatcgtaactaactctctctctaagagagagaaaaaggct-ctgataccatattatgaaaagtgaaat 165  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  9849173 ctcaagcatcaatggcggaaaatgtgtaactgaatcgtaactgattctctctctaagagagagaaaaataaaactgataccatattatgaaaagtgaaat 9849272  T
Q  166 ggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaagcata 265  Q
    |||||||||  |||||||||||||  | | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9849273 ggaatagaagatatgattctcattactggtatttgcttgtacaacagttatttataggttgttataacctcatgcttactaacatgtacctagaagcata 9849372  T
Q  266 ggataataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcgtgat 365  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  9849373 ggataataactctgtaactaactaaactattctaagttagttatttgtcatacaaactattacactttaggattttcatctttctgtttttcttcgtgat 9849472  T
Q  366 gcaata 371  Q
    ||||||    
T  9849473 gcaata 9849478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 148 - 291
Target Start/End: Original strand, 9843129 - 9843272
Alignment:
Q  148 tattatgaaaagtgaaatggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaa 247  Q
    |||||||||||||||||||||||||||  |||||||||||||  | | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9843129 tattatgaaaagtgaaatggaatagaagatatgattctcattactggtatttgcttgtacaacagttatttataggttgttataacctcatgcttactaa 9843228  T
Q  248 catatacctagaagcataggataataactctgtaactaactaaa 291  Q
    ||| ||||||||||||||||||||||||||||||||||||||||    
T  9843229 catgtacctagaagcataggataataactctgtaactaactaaa 9843272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 161 - 312
Target Start/End: Complemental strand, 40280576 - 40280424
Alignment:
Q  161 gaaatggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaa 260  Q
    |||||||||| |||| ||||||||||||||||||||| |||||||| |||   |||||||| ||||||||| || |||||| ||||||||  ||||||||    
T  40280576 gaaatggaatggaaaatatgattctcattgattgaataagcttgtataacaagtatttataagttgttatatccacatgctaactaacatgaacctagaa 40280477  T
Q  261 gcataggataataactctgtaactaact-aaactattctaagctagttacttg 312  Q
    ||||||||  || |||| |||||||||| |||||| |||||||||||||||||    
T  40280476 gcataggaacattactcagtaactaactaaaactaatctaagctagttacttg 40280424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 286 - 371
Target Start/End: Original strand, 9844638 - 9844723
Alignment:
Q  286 actaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcgtgatgcaata 371  Q
    |||||||||||||||| |||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9844638 actaaactattctaagttagttatttgtcatacaaactattacactttaggattttcatctttctgtttttcttcgtgatgcaata 9844723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 500 - 605
Target Start/End: Original strand, 28695545 - 28695650
Alignment:
Q  500 aaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgatctcttcctcattgctgattgtttccctttgctcgaaga 599  Q
    |||| ||||||||| ||||||| ||| | ||||| ||| ||  | |||| ||| |||||||||||||| ||||||||||||| |||||||||| ||||||    
T  28695545 aaaacattacaactatgacctctctcacttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgcccgaaga 28695644  T
Q  600 actcga 605  Q
    ||||||    
T  28695645 actcga 28695650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 545 - 612
Target Start/End: Original strand, 28673340 - 28673407
Alignment:
Q  545 ctcttcatggcactgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagt 612  Q
    |||| ||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||    
T  28673340 ctctccatagcaccgatctcttcttcattgctgattgcttccctttgctcgaagaactcgatcttagt 28673407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 554 - 614
Target Start/End: Complemental strand, 29021777 - 29021717
Alignment:
Q  554 gcactgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagtta 614  Q
    ||||| ||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||    
T  29021777 gcactcatctctttcttattgctgattgcttccctttgctcgaagaactcgatcttagtta 29021717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 625
Target Start/End: Original strand, 28662036 - 28662104
Alignment:
Q  557 ctgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagttaccccaaagagt 625  Q
    ||||||| || |||||| |  |||| ||||||||||||||||||||||| |||||| | ||| ||||||    
T  28662036 ctgatctttttctcattccctattgcttccctttgctcgaagaactcgatcttagtgatcccgaagagt 28662104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 1e-89; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 148 - 371
Target Start/End: Original strand, 25189541 - 25189764
Alignment:
Q  148 tattatgaaaagtgaaatggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaa 247  Q
    |||||||||||||||||||||||||||  |||||||||||||  | | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25189541 tattatgaaaagtgaaatggaatagaagatatgattctcattactggtatttgcttgtacaacagttatttataggttgttataacctcatgcttactaa 25189640  T
Q  248 catatacctagaagcataggataataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctt 347  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||||||| ||||||||||||    
T  25189641 catgtacctagaagcataggataataactctgtaactaactaaactattctaagttagttatttgtcatacaaactattacactttaggattttcatctt 25189740  T
Q  348 tctgtttttcttcgtgatgcaata 371  Q
    ||||||||||||||||||||||||    
T  25189741 tctgtttttcttcgtgatgcaata 25189764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 465 - 521
Target Start/End: Original strand, 19467418 - 19467474
Alignment:
Q  465 caccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 521  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||||||||||||    
T  19467418 caccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctc 19467474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 161 - 372
Target Start/End: Original strand, 27487938 - 27488149
Alignment:
Q  161 gaaatggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaa 260  Q
    |||||| ||| |||| || |||| ||||||||||||| |||||||||||||  |||||||| | |  || | ||| ||||||| |||||| |||||| ||    
T  27487938 gaaatgaaatggaaaataagattttcattgattgaataagcttgtacaactagtatttataagctactagatccttatgcttattaacatgtaccta-aa 27488036  T
Q  261 gcataggataataactc-tgtaactaact-aaactattctaagctagttacttgtcag-acaagctattacactttaagattttcatctttctgtttttc 357  Q
    |||||| |||||||||| ||||||||||| ||||||   | ||| ||||||||| |||  |||| ||||||| ||  || |||  ||||||||| |||||    
T  27488037 gcatagaataataactcttgtaactaactgaaactaacttgagcaagttacttg-cagtgcaagttattacaattagaggtttcaatctttctg-ttttc 27488134  T
Q  358 ttcgtgatgcaatac 372  Q
    |||||||||||||||    
T  27488135 ttcgtgatgcaatac 27488149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 27480586 - 27480712
Alignment:
Q  161 gaaatggaatagaaattatgattctcattgattgaattagcttgtacaactgttatttataggttgttataacctcatgcttactaacatatacctagaa 260  Q
    |||||| ||| |||| || |||| ||||||||||||| |||||||||||||  |||||||| | |  || | ||| ||||||| |||||| |||||| ||    
T  27480586 gaaatgaaatggaaaataagattttcattgattgaataagcttgtacaactagtatttataagctactagatccttatgcttattaacatgtaccta-aa 27480684  T
Q  261 gcataggataataactct-gtaactaac 287  Q
    |||||| ||||||||||| |||||||||    
T  27480685 gcatagaataataactctagtaactaac 27480712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 608
Target Start/End: Complemental strand, 7555270 - 7555124
Alignment:
Q  462 acccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgat 561  Q
    ||||||||| || |||| ||| || |||| |||||| ||||||||||||||||| ||||||||| | |||||  |  |  | ||| |  || ||| |||     
T  7555270 acccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgac 7555171  T
Q  562 ctcttcctcattgctgattgtttccctttgctcgaagaactcgacct 608  Q
     | || ||||||||||| |||||||||||||||||||||||| ||||    
T  7555170 ttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 7555124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 462 - 625
Target Start/End: Original strand, 8186343 - 8186506
Alignment:
Q  462 acccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgat 561  Q
    |||||||||||| |||||||| || |||||| |||| | ||||||||||||||||||||||||| |||||||  || || ||||| |  || |||||||     
T  8186343 acccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttccaacattgaatctatcaatagcactgac 8186442  T
Q  562 ctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagttaccccaaagagt 625  Q
     |||||||||| || |||||||| ||||| || ||||||||||| || ||| |||| |||||||    
T  8186443 atcttcctcatcgccgattgttttcctttcctagaagaactcgatctcagtaaccctaaagagt 8186506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 23871996 - 23872109
Alignment:
Q  216 tttataggttgttataacctcatgcttactaacatatacctagaagcataggataataactctgtaactaactaaactattctaagctagttacttgtca 315  Q
    |||||| ||||||||| || |||||| ||||||||  ||||||||| ||||||| | ||||| |||||||||||||||| ||||||||||||||||||      
T  23871996 tttataagttgttatacccacatgctaactaacatgaacctagaagtataggattacaactcagtaactaactaaactaatctaagctagttacttgtac 23872095  T
Q  316 gacaagctattaca 329  Q
    | ||||||||||||    
T  23872096 ggcaagctattaca 23872109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 496 - 612
Target Start/End: Original strand, 7225179 - 7225294
Alignment:
Q  496 tctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgatctcttcctcattgctgattgtttccctttgctcg 595  Q
    |||||||||||||||||||||||||| ||| ||||||| ||| || | ||| |   | |||||||  | |||||||| || |||||||||||||||||||    
T  7225179 tctcaaaatattacaactttgacctctctcacatgttc-cacatttattctgtcactagcactgacatgttcctcatcgcggattgtttccctttgctcg 7225277  T
Q  596 aagaactcgaccttagt 612  Q
    |||||||||||||||||    
T  7225278 aagaactcgaccttagt 7225294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 427 - 521
Target Start/End: Complemental strand, 553866 - 553772
Alignment:
Q  427 ccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 521  Q
    |||| ||| |||| ||||||||||||||||     ||||||||||||||||||||| || |||| |||||| ||||| |||||||||||||||||    
T  553866 ccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctc 553772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 618
Target Start/End: Original strand, 1547794 - 1547843
Alignment:
Q  569 tcattgctgattgtttccctttgctcgaagaactcgaccttagttacccc 618  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  1547794 tcattgccgattgtttcccttttctcgaagaactcgaccttagttacccc 1547843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 619
Target Start/End: Original strand, 2367988 - 2368049
Alignment:
Q  558 tgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagttacccca 619  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||| | ||||| ||||    
T  2367988 tgatctcttcttcattgctgattgtttccctttactcgaagaactcgacatcagttatccca 2368049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 619
Target Start/End: Original strand, 2373554 - 2373615
Alignment:
Q  558 tgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagttacccca 619  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||| ||||    
T  2373554 tgatctcttcttcattgctgattgtttccctttgctcgaagaacttgacttgagttatccca 2373615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 603
Target Start/End: Original strand, 5106639 - 5106684
Alignment:
Q  558 tgatctcttcctcattgctgattgtttccctttgctcgaagaactc 603  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||    
T  5106639 tgatctcttcttcattgctgattgtttccctttactcgaagaactc 5106684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 619
Target Start/End: Complemental strand, 12124568 - 12124507
Alignment:
Q  558 tgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagttacccca 619  Q
    |||||||||| |||||||||||||||||||||| || |||||||| ||||| ||||| ||||    
T  12124568 tgatctcttcttcattgctgattgtttccctttactagaagaacttgacctcagttatccca 12124507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 492 - 608
Target Start/End: Complemental strand, 1755595 - 1755479
Alignment:
Q  492 tttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatc-tcttcatggcactgatctcttcctcattgctgattgtttcccttt 590  Q
    |||||||||||| ||||||||||||||||| ||| ||||||| ||   ||  || ||| |||  || |||  |||||||||||||||| |||||||||||    
T  1755595 tttctctcaaaagattacaactttgacctctctcacatgttc-caacatcgctcatctccataccaatgacttcttcctcattgctgactgtttcccttt 1755497  T
Q  591 gctcgaagaactcgacct 608  Q
    ||| ||||||||| ||||    
T  1755496 gcttgaagaactcaacct 1755479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 558 - 603
Target Start/End: Complemental strand, 2518956 - 2518911
Alignment:
Q  558 tgatctcttcctcattgctgattgtttccctttgctcgaagaactc 603  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||||    
T  2518956 tgatctcttcttcattgctgattgtttccctttactcaaagaactc 2518911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 558 - 611
Target Start/End: Original strand, 2621488 - 2621541
Alignment:
Q  558 tgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttag 611  Q
    |||||| ||| || ||||||||||||||||||| |||||||||||| |||||||    
T  2621488 tgatctattcttccttgctgattgtttccctttactcgaagaactcaaccttag 2621541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 23871580 - 23871629
Alignment:
Q  161 gaaatggaatagaaattatgattctcattgattgaattagcttgtacaac 210  Q
    ||||| |||| |||| ||||||||||||||||||||| ||||||||||||    
T  23871580 gaaatagaatggaaaatatgattctcattgattgaataagcttgtacaac 23871629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 608
Target Start/End: Original strand, 2363162 - 2363210
Alignment:
Q  560 atctcttcctcattgctgattgtttccctttgctcgaagaactcgacct 608  Q
    |||||||| |||||||||||||||||||||| ||||| |||||| ||||    
T  2363162 atctcttcttcattgctgattgtttccctttcctcgacgaactcaacct 2363210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 521
Target Start/End: Complemental strand, 661928 - 661871
Alignment:
Q  464 ccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 521  Q
    ||||||||||||| ||||| || |||| |||||| ||| ||||||||||||| |||||    
T  661928 ccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctc 661871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 603
Target Start/End: Complemental strand, 2477306 - 2477261
Alignment:
Q  558 tgatctcttcctcattgctgattgtttccctttgctcgaagaactc 603  Q
    |||||||||| ||||| || |||||||||||||||| |||||||||    
T  2477306 tgatctcttcttcatttctaattgtttccctttgctagaagaactc 2477261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 603
Target Start/End: Complemental strand, 2534036 - 2533991
Alignment:
Q  558 tgatctcttcctcattgctgattgtttccctttgctcgaagaactc 603  Q
    |||||||||| | |||||||||||||||||||| || |||||||||    
T  2534036 tgatctcttcttgattgctgattgtttccctttacttgaagaactc 2533991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 55907677 - 55907714
Alignment:
Q  480 tggcttacgagttttctctcaaaatattacaactttga 517  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  55907677 tggcttacgagctttctcccaaaatattacaactttga 55907714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 2467264 - 2467224
Alignment:
Q  559 gatctcttcctcattgctgattgtttccctttgctcgaaga 599  Q
    ||||| ||| |||||||||||||||||||||| ||||||||    
T  2467264 gatcttttcttcattgctgattgtttccctttactcgaaga 2467224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 5035345 - 5035301
Alignment:
Q  558 tgatctcttcctcattgctgattgtttccctttgctcgaagaact 602  Q
    |||||| ||| | |||||||||||||||||||| |||||||||||    
T  5035345 tgatcttttcttgattgctgattgtttccctttactcgaagaact 5035301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 94 - 163
Alignment:
Q  302 ctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcgtgatgcaata 371  Q
    ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  94 ctagttatttgtcatacaaactattacactttaggattttcatctttctgtttttcttcgtgatgcaata 163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 413 - 517
Target Start/End: Original strand, 1821 - 1925
Alignment:
Q  413 aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac 512  Q
    ||||||||| |||||||| ||| |||| ||||||| |||||||||  | |||||  ||||||||| |||| || |||||||| || ||||||||||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 1920  T
Q  513 tttga 517  Q
    |||||    
T  1921 tttga 1925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 413 - 517
Target Start/End: Complemental strand, 8395 - 8291
Alignment:
Q  413 aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac 512  Q
    ||||||||| |||||||| ||| |||| ||||||| |||||||||  | |||||  ||||||||| |||| || |||||||| || ||||||||||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 8296  T
Q  513 tttga 517  Q
    |||||    
T  8295 tttga 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 413 - 517
Target Start/End: Original strand, 30584 - 30688
Alignment:
Q  413 aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac 512  Q
    ||||||||| |||||||| ||| |||| ||||||| |||||||||  | |||||  ||||||||| |||| || |||||||| || ||||||||||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 30683  T
Q  513 tttga 517  Q
    |||||    
T  30684 tttga 30688  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 568 - 619
Target Start/End: Original strand, 51763489 - 51763540
Alignment:
Q  568 ctcattgctgattgtttccctttgctcgaagaactcgaccttagttacccca 619  Q
    |||||||| || |||||||| |||||||||||||||||||| ||||||||||    
T  51763489 ctcattgcggaatgtttcccattgctcgaagaactcgacctcagttacccca 51763540  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 412 - 525
Target Start/End: Original strand, 51120590 - 51120703
Alignment:
Q  412 caaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaa 511  Q
    ||||| ||||||||||||| ||||||   ||||||| ||||||||     |||||||| ||  || ||||| || |||| ||||||||||||| ||||||    
T  51120590 caaatatctcttttcccattgaaacttcgatcactccatctctccaacacacccaccaatcttgccaatggattgcgagctttctctcaaaatgttacaa 51120689  T
Q  512 ctttgacctcactc 525  Q
    ||||||| ||||||    
T  51120690 ctttgacttcactc 51120703  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 521
Target Start/End: Original strand, 6593923 - 6593974
Alignment:
Q  470 ttcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 521  Q
    ||||| ||||||| || ||||||||||| ||||| |||||||||||||||||    
T  6593923 ttccctcaaatggtttgcgagttttctcacaaaagattacaactttgacctc 6593974  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 609
Target Start/End: Complemental strand, 6432856 - 6432758
Alignment:
Q  511 actttgacctcactctcatgttctcacgttcaatctcttcatggcactgatctcttcctcattgctgattgtttccctttgctcgaagaactcgacctt 609  Q
    ||||||||||| |||   ||||| ||| |||| |||||| || || || | ||||| |||||||| |||||||||||||||||| || ||||| |||||    
T  6432856 actttgacctctctcaattgttcccacattcattctcttaatagctctcacctcttactcattgccgattgtttccctttgctcaaacaactcaacctt 6432758  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 608
Target Start/End: Complemental strand, 9412090 - 9412050
Alignment:
Q  568 ctcattgctgattgtttccctttgctcgaagaactcgacct 608  Q
    ||||||||||| |||||||||||||| ||||||||| ||||    
T  9412090 ctcattgctgaatgtttccctttgcttgaagaactcaacct 9412050  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 4318421 - 4318375
Alignment:
Q  67 ctcaagcatcaatggcggaaaatgtgtaactgaatcgtaactaactct 114  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||    
T  4318421 ctcaagcatcaatggcggaaag-gtgtaactgaatcgtaacaaactct 4318375  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 518
Target Start/End: Original strand, 1036613 - 1036651
Alignment:
Q  480 tggcttacgagttttctctcaaaatattacaactttgac 518  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  1036613 tggcttacgagctttctcccaaaatattacaactttgac 1036651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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