View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_high_32 (Length: 201)
Name: NF9164_high_32
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 31865788 - 31865898
Alignment:
| Q |
78 |
cagtttagttgacatagctttggtgagttgtattcggagagattttaatctctcttcaattaaattgggaagaacttttagtacactgtatacgatcatt |
177 |
Q |
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| T |
31865788 |
cagtttagttgacatagctttggtgagttgtattcggagagattttaatctctcttcaattaaattgggaagaacttttagtacactgtatatgatcatt |
31865887 |
T |
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| Q |
178 |
ccttgttattg |
188 |
Q |
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| T |
31865888 |
cgttgttattg |
31865898 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 31865275 - 31865339
Alignment:
| Q |
15 |
agagacggaacatttgattcaaggatagctgggcctgccaacaaaaatgttttagtaagttcacag |
80 |
Q |
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| T |
31865275 |
agagacgggacatttgattcaaggatagctgggcctgccaac-aaaatgttttagtaagttcacag |
31865339 |
T |
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