View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9164_high_9 (Length: 433)

Name: NF9164_high_9
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9164_high_9
NF9164_high_9
[»] chr1 (22 HSPs)
chr1 (15-416)||(39395716-39396106)
chr1 (200-276)||(10324937-10325013)
chr1 (200-277)||(1514353-1514430)
chr1 (187-260)||(43018461-43018534)
chr1 (200-256)||(3515828-3515884)
chr1 (189-252)||(33693020-33693083)
chr1 (217-279)||(3416107-3416169)
chr1 (185-257)||(6574176-6574248)
chr1 (237-277)||(27500332-27500372)
chr1 (200-256)||(32370050-32370106)
chr1 (200-243)||(37522942-37522985)
chr1 (237-276)||(52263646-52263685)
chr1 (194-272)||(4554912-4554989)
chr1 (200-254)||(28083909-28083963)
chr1 (220-277)||(213535-213592)
chr1 (200-276)||(48549013-48549087)
chr1 (187-260)||(52013493-52013566)
chr1 (200-276)||(6041485-6041560)
chr1 (220-260)||(17284126-17284166)
chr1 (200-260)||(20026179-20026239)
chr1 (168-260)||(28287351-28287442)
chr1 (200-256)||(44801595-44801651)
[»] chr6 (11 HSPs)
chr6 (185-260)||(30926793-30926868)
chr6 (200-276)||(1485145-1485221)
chr6 (185-276)||(31305846-31305937)
chr6 (200-277)||(852542-852619)
chr6 (200-260)||(34898705-34898766)
chr6 (194-277)||(9505774-9505857)
chr6 (200-257)||(2234525-2234582)
chr6 (203-260)||(10874507-10874564)
chr6 (220-257)||(34027435-34027472)
chr6 (203-260)||(34063325-34063382)
chr6 (187-259)||(25388075-25388146)
[»] chr8 (10 HSPs)
chr8 (194-260)||(4336640-4336706)
chr8 (198-277)||(16972062-16972141)
chr8 (217-256)||(5893234-5893273)
chr8 (198-276)||(30098918-30098994)
chr8 (211-261)||(3206078-3206128)
chr8 (198-276)||(13384653-13384731)
chr8 (287-373)||(18355758-18355843)
chr8 (198-276)||(26100145-26100223)
chr8 (217-277)||(32736489-32736549)
chr8 (220-276)||(34478193-34478249)
[»] chr2 (11 HSPs)
chr2 (182-276)||(44439246-44439340)
chr2 (201-277)||(13912798-13912874)
chr2 (194-277)||(33961979-33962062)
chr2 (185-260)||(3476444-3476519)
chr2 (185-276)||(33502847-33502938)
chr2 (200-261)||(10618955-10619016)
chr2 (200-257)||(42982554-42982611)
chr2 (188-250)||(7630191-7630253)
chr2 (185-260)||(7629866-7629939)
chr2 (184-260)||(36374311-36374386)
chr2 (220-276)||(42741007-42741063)
[»] chr7 (6 HSPs)
chr7 (200-261)||(30182310-30182371)
chr7 (200-277)||(38123664-38123741)
chr7 (200-277)||(40561756-40561833)
chr7 (200-257)||(27571872-27571929)
chr7 (220-369)||(40491608-40491750)
chr7 (225-257)||(22310477-22310509)
[»] chr4 (13 HSPs)
chr4 (200-277)||(33843987-33844064)
chr4 (209-276)||(4243406-4243473)
chr4 (189-276)||(10185193-10185280)
chr4 (187-256)||(2206362-2206431)
chr4 (185-277)||(32818368-32818459)
chr4 (209-261)||(33843702-33843754)
chr4 (200-260)||(37439155-37439215)
chr4 (200-232)||(48045744-48045776)
chr4 (194-245)||(8330120-8330171)
chr4 (217-276)||(47596300-47596359)
chr4 (220-277)||(41751270-41751327)
chr4 (200-276)||(9064241-9064317)
chr4 (203-255)||(20712664-20712715)
[»] chr3 (17 HSPs)
chr3 (198-260)||(30301013-30301076)
chr3 (200-277)||(27266792-27266869)
chr3 (200-277)||(35264409-35264486)
chr3 (200-276)||(3776532-3776608)
chr3 (187-251)||(44489235-44489299)
chr3 (203-242)||(829906-829945)
chr3 (198-277)||(36302191-36302270)
chr3 (215-276)||(46853533-46853594)
chr3 (205-260)||(44958621-44958676)
chr3 (185-247)||(20484020-20484082)
chr3 (210-260)||(23187865-23187915)
chr3 (204-273)||(35058375-35058445)
chr3 (223-260)||(37703132-37703169)
chr3 (200-259)||(3845129-3845189)
chr3 (200-260)||(25359589-25359649)
chr3 (202-270)||(38332559-38332627)
chr3 (287-371)||(53567968-53568050)
[»] chr5 (12 HSPs)
chr5 (185-277)||(33608499-33608591)
chr5 (186-235)||(42724403-42724452)
chr5 (172-256)||(3043040-3043124)
chr5 (194-273)||(37877062-37877141)
chr5 (185-277)||(10898718-10898808)
chr5 (187-256)||(11132804-11132873)
chr5 (200-261)||(24306110-24306171)
chr5 (200-261)||(24367145-24367206)
chr5 (250-356)||(29922956-29923059)
chr5 (200-277)||(36639947-36640024)
chr5 (185-277)||(10859836-10859928)
chr5 (242-306)||(14299850-14299913)
[»] scaffold0283 (1 HSPs)
scaffold0283 (186-235)||(18377-18426)
[»] scaffold0361 (1 HSPs)
scaffold0361 (225-257)||(14132-14164)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 416
Target Start/End: Original strand, 39395716 - 39396106
Alignment:
15 cagagacagagtggaaggtaccctctccgctcaccgtaacgaacttgtttcccttctctccaggttggttttatttccttcttctttgtcaaccgcgcta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
39395716 cagagacagagtggaaggtaccctctccgctcaccgtaacgaacttgtttcccttctctccaggttggttttatttccttc---tttgtcaaccgcgcta 39395812  T
115 ttcattcgtataatcatttatcttcttcatcaagttaacctgagattcaaaatgttggttgctttagagaagaattgaatctaatttgaagctagaaatt 214  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
39395813 ttcattcgtataatcatgtatcttcttcatcaagttaacctgagattcaaaatgttggttgctttagagaagaattgaatctaatttgaatctaaaaatt 39395912  T
215 ggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatggaatgaatatatccaaatataaattacttttgccttc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
39395913 ggagttttttattctagaattaatttttacactcaaatttattgttcgactcatttttacatggaatgaatatatccaaatataaattac-tttaccttc 39396011  T
315 aactcccttgtaatcatatatcaattttagataatcaattcacttgaaatcaatttttaccactaacacacactaagtttgatgaaatcatggtggattc 414  Q
    ||||||||| ||      | |||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39396012 aactcccttata-----ttttca--tttagataatcaattcactcgaaatcaatttttaccactaacacacactaagtttgatgaaatcatggtggattc 39396104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 10325013 - 10324937
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||||| ||||||||| || |||| |||||| |||| ||||||||||||||||||||||||  ||||| ||||||||    
10325013 ttgaagatagaaattgtagcttttgattctataattgatttttacactcaaatttattgttatactcacttttacat 10324937  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 1514353 - 1514430
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||||||||| | ||| || |||||||| || |||| |||||||||| |||||||||||||  |||||||||||||||    
1514353 ttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcatttttacatg 1514430  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 43018461 - 43018534
Alignment:
187 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    |||||| |||||  ||||||||||| ||||| ||||| ||||||||||| || |||| ||||||||||||||||    
43018461 aattgattctaacatgaagctagaatttggaatttttaattctagaattgatgtttagactcaaatttattgtt 43018534  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 3515828 - 3515884
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 256  Q
    |||||||||||||||| || |||| ||||||||||| ||||||||||||||| ||||    
3515828 ttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaaattat 3515884  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 33693020 - 33693083
Alignment:
189 ttgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaat 252  Q
    |||| ||||| |||||||||||||||| || |||| |||||| |||| ||||||||||||||||    
33693020 ttgattctaacttgaagctagaaattgtagcttttgattctataattgatttttacactcaaat 33693083  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 3416107 - 3416169
Alignment:
217 agttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatgga 279  Q
    ||||||||||| ||||||| |||||||||| ||||||||| |||| ||||| ||||| |||||    
3416107 agttttttattttagaattgatttttacacacaaatttatagtttaactcaattttatatgga 3416169  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 6574176 - 6574248
Alignment:
185 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 257  Q
    |||||||| ||||| || |||||| ||||| ||| |||| ||| ||||||||||||| | |||||||||||||    
6574176 agaattgattctaactttaagctaaaaattagagcttttgattgtagaattaattttcagactcaaatttatt 6574248  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 27500332 - 27500372
Alignment:
237 atttttacactcaaatttattgtttgactcatttttacatg 277  Q
    ||||||||||||||||||||||||  |||||||||||||||    
27500332 atttttacactcaaatttattgttcaactcatttttacatg 27500372  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 32370106 - 32370050
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 256  Q
    |||||| ||||| ||| | |||||||||||||||||| ||||||||| |||||||||    
32370106 ttgaagttagaatttgtaattttttattctagaattattttttacacacaaatttat 32370050  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 37522985 - 37522942
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaattttta 243  Q
    |||||||||||| |||||||||||||| |||||||| |||||||    
37522985 ttgaagctagaagttggagttttttatcctagaattgattttta 37522942  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 52263685 - 52263646
Alignment:
237 atttttacactcaaatttattgtttgactcatttttacat 276  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
52263685 atttttacactcaaatttattgtttaactcagttttacat 52263646  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 4554912 - 4554989
Alignment:
194 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcattttt 272  Q
    |||||||||||| ||||  |||||||||||| || || | || |||||||  |||||||||||||||||| ||||||||    
4554912 tctaatttgaagttagactttggagttttttctt-taaatttgatttttagtctcaaatttattgtttgattcattttt 4554989  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 28083963 - 28083909
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaattt 254  Q
    |||||||||||| ||| || |||| |||||| ||||||||||||||| |||||||    
28083963 ttgaagctagaatttgtagcttttgattctataattaatttttacacacaaattt 28083909  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 213592 - 213535
Alignment:
220 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||| ||||||||||| ||||||| |||||||||| |||||  ||||| |||||||||    
213592 ttttgattctagaattgatttttaaactcaaatttgttgttcaactcacttttacatg 213535  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 48549087 - 48549013
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||||||||||||||| || || | ||||||||||| ||||||| ||||  ||||||||||  ||||| ||||||||    
48549087 ttgaagctagaaattgtagcttctgattctagaattgatttttaaactc--atttattgttcaactcacttttacat 48549013  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 52013566 - 52013493
Alignment:
187 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    |||||| ||||| ||||||||| ||| ||  || | | ||||||||||| ||||||||||||||||||| ||||    
52013566 aattgattctaacttgaagctaaaaactgtggtctctgattctagaattgatttttacactcaaatttactgtt 52013493  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 6041485 - 6041560
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||||||||||| ||| ||  ||| |||||||||||  |||||| |||| |||||||||||| ||||| ||||||||    
6041485 ttgaagctagaatttgaagcctttgattctagaattgttttttagactc-aatttattgtttaactcacttttacat 6041560  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 17284126 - 17284166
Alignment:
220 tttttattctagaattaatttttacactcaaatttattgtt 260  Q
    |||| |||||| |||| ||||||||||||||||||||||||    
17284126 ttttgattctaaaattgatttttacactcaaatttattgtt 17284166  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 20026239 - 20026179
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    |||||||||||||||  || |||| | ||||||||| ||||  ||||||||||||||||||    
20026239 ttgaagctagaaattcaagcttttaactctagaattgatttgaacactcaaatttattgtt 20026179  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 28287442 - 28287351
Alignment:
168 gttggttgctttagagaagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    |||||||||||| ||| |||||||  |||| || ||||| || | ||| || |||| ||| ||||||| ||||| ||||||||||||||||||    
28287442 gttggttgcttttgagtagaattggttctactt-gaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgtt 28287351  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 44801595 - 44801651
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 256  Q
    |||||| ||| | ||| |||||||||||||| ||||||||||||| | |||||||||    
44801595 ttgaagttaggatttgtagttttttattctaaaattaatttttacgcgcaaatttat 44801651  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 30926868 - 30926793
Alignment:
185 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    ||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
30926868 agaatggattctaacttgaagctagaaattggagttttttattctagaattgatttttacactcaaatttattgtt 30926793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 1485221 - 1485145
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    ||||| ||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||  ||||| ||||||||    
1485221 ttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacat 1485145  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 31305937 - 31305846
Alignment:
185 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||| ||| ||||| ||||||||| ||||||||| |||| ||||||||||| |||| ||||||||||||||||| |  ||||| ||||||||    
31305937 agaactgattctaacttgaagctaaaaattggagcttttgattctagaattgatttatacactcaaatttattgatcaactcacttttacat 31305846  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 852542 - 852619
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||||||||||||||| || || | ||||||||||| |||||||||| ||||| |||||||| ||||| |||||||||    
852542 ttgaagctagaaattgtaggttctgattctagaattgatttttacacccaaatgtattgtttaactcacttttacatg 852619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 34898705 - 34898766
Alignment:
200 ttgaagctagaaattggagtttt-ttattctagaattaatttttacactcaaatttattgtt 260  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||| |||||| |||||||||||    
34898705 ttgaagctagaaattagagtttttttattctagaattgattttaacactcgaatttattgtt 34898766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 9505774 - 9505857
Alignment:
194 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    ||||| |||||| |||||||||||| |||| ||||||  ||| ||||||| ||||||||||||||||  || || |||||||||    
9505774 tctaacttgaagatagaaattggagcttttgattctatgattgatttttaaactcaaatttattgttcaacacacttttacatg 9505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 2234525 - 2234582
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 257  Q
    ||||||||| ||| || || |||| ||||||||||| ||||| |||||||||||||||    
2234525 ttgaagctaaaaactgaagcttttgattctagaattgattttaacactcaaatttatt 2234582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 10874507 - 10874564
Alignment:
203 aagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    |||||||||||| ||| |||| ||||||||||| ||||||||| ||||| ||| ||||    
10874507 aagctagaaattagagcttttgattctagaattgatttttacattcaaacttagtgtt 10874564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 34027472 - 34027435
Alignment:
220 tttttattctagaattaatttttacactcaaatttatt 257  Q
    |||| ||||||||||| |||||||||||||||||||||    
34027472 ttttgattctagaattgatttttacactcaaatttatt 34027435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 34063325 - 34063382
Alignment:
203 aagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    ||||||||||||| || || | ||||||||||||| ||||||| ||||| ||||||||    
34063325 aagctagaaattgtaggttctcattctagaattaacttttacaatcaaacttattgtt 34063382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 25388075 - 25388146
Alignment:
187 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgt 259  Q
    |||||| ||||||| ||| | |||||||| ||| ||| ||| ||||||| ||||| |||||||||||||||||    
25388075 aattgattctaatt-gaaacaagaaattgaagtctttgattttagaattgattttgacactcaaatttattgt 25388146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 4336706 - 4336640
Alignment:
194 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    ||||| ||||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||    
4336706 tctaacttgaagctagaaaattgagctttttattttagaattaatttttacactcaaatttattgtt 4336640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 16972141 - 16972062
Alignment:
198 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||||||||||||| ||| ||||||| ||| ||||||| ||||||| || |||||||||||||  | ||| |||||||||    
16972141 atttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaatcacttttacatg 16972062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 5893234 - 5893273
Alignment:
217 agttttttattctagaattaatttttacactcaaatttat 256  Q
    ||||||||||||||||||||||| |||||| |||||||||    
5893234 agttttttattctagaattaattattacacacaaatttat 5893273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 30098918 - 30098994
Alignment:
198 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||||||||||||| ||| || |||  |||||||||||||||||||||   |||||||| |||| ||||| ||||||||    
30098918 atttgaagctagaatttgtagctttcgattctagaattaatttttaca--aaaatttatagtttaactcacttttacat 30098994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 3206078 - 3206128
Alignment:
211 aattggagttttttattctagaattaatttttacactcaaatttattgttt 261  Q
    ||||||||||||||||| || |||| || |||||||| |||||||||||||    
3206078 aattggagttttttattataaaattgatctttacacttaaatttattgttt 3206128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 13384731 - 13384653
Alignment:
198 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    ||||||||||| || ||| || |||| ||||||||||| ||||| |||| ||||||||| |||  ||||| ||||||||    
13384731 atttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 373
Target Start/End: Complemental strand, 18355843 - 18355758
Alignment:
287 tatccaaatataaattacttttgccttcaactcccttgtaatcatatatcaattttagataatcaattcacttgaaatcaattttta 373  Q
    ||||||||||||||| ||||||  || |||  | ||| |||||||| |||||||||| | ||||||||||||  |||||||||||||    
18355843 tatccaaatataaatcacttttatctccaagccacttttaatcata-atcaattttacaaaatcaattcactcaaaatcaattttta 18355758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 26100223 - 26100145
Alignment:
198 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||||||||||| | ||| || |||| |||||| |||| |||||||||| ||||||||| |||  ||||| ||||||||    
26100223 atttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacat 26100145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 32736489 - 32736549
Alignment:
217 agttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    ||||||||||| || ||||||||||||||| ||||||||| |||  | ||| |||||||||    
32736489 agttttttattttaaaattaatttttacacacaaatttatagttcaattcacttttacatg 32736549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 34478249 - 34478193
Alignment:
220 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||| ||| ||||||| ||||||| ||||||||||||||||  ||| ||||||||||    
34478249 ttttgattttagaattcatttttatactcaaatttattgttcaacttatttttacat 34478193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 44439246 - 44439340
Alignment:
182 agaagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    ||||||||||| ||||| ||||||||| || |||||| |||| |||||| |||| ||||| ||||||||||||||||||  ||||| ||||||||    
44439246 agaagaattgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacat 44439340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 13912798 - 13912874
Alignment:
201 tgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    ||||||||||| ||| | |||||||||||||||||||||||||||| ||||||||  |||  |||||||||||||||    
13912798 tgaagctagaatttgtaattttttattctagaattaatttttacacacaaatttaccgttcaactcatttttacatg 13912874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 194 - 277
Target Start/End: Complemental strand, 33962062 - 33961979
Alignment:
194 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    ||||| || ||||| ||||||||||||||| |||||| |||| ||||||| ||||||||||||||||  | |||||||||||||    
33962062 tctaactttaagcttgaaattggagtttttgattctataattgatttttagactcaaatttattgttcaagtcatttttacatg 33961979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 3476519 - 3476444
Alignment:
185 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    |||||||| ||||| || |||||| ||||| ||| |||| ||||||||||| ||||||||| |||||| |||||||    
3476519 agaattgattctaacttaaagctaaaaattagagcttttgattctagaatttatttttacattcaaatgtattgtt 3476444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 33502938 - 33502847
Alignment:
185 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||||||| ||||| |||||||||||| ||  ||||||| | ||||||  | ||| ||||||| ||||||||||||  ||||||||||||||    
33502938 agaattgattctaacttgaagctagaatttcaagtttttgagtctagatgtgattattacactaaaatttattgttcaactcatttttacat 33502847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 10619016 - 10618955
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 261  Q
    ||||||||||||||| ||| |||| |||||| |||| ||||| |||||||||||| ||||||    
10619016 ttgaagctagaaattagagcttttgattctataattgattttaacactcaaatttgttgttt 10618955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 42982554 - 42982611
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 257  Q
    |||||||||||||||| || |||| |||| |||||| |||||||||| ||||||||||    
42982554 ttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttatt 42982611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 7630191 - 7630253
Alignment:
188 attgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaa 250  Q
    ||||| |||||| |||||||||| |||| || |||| ||||||||||| |||||| |||||||    
7630191 attgattctaatgtgaagctagacattgtagcttttgattctagaattgatttttccactcaa 7630253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 7629866 - 7629939
Alignment:
185 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    |||||||| ||||| ||||||||||| |||  || || ||| ||||||||| || |||||||||||||| ||||||    
7629866 agaattgattctaacttgaagctagagatt--agcttcttactctagaattgatatttacactcaaattcattgtt 7629939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 36374311 - 36374386
Alignment:
184 aagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    ||||||| | ||||||| ||||||| || |||||||||||| || || |||||||| | | ||||||||||||||||    
36374311 aagaatttattctaattagaagctaaaatttggagtttttt-ttttataattaattctcaaactcaaatttattgtt 36374386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 42741007 - 42741063
Alignment:
220 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||| ||||||||||| ||||||||||||||||||| |||   ||||| ||||||||    
42741007 ttttgattctagaattgatttttacactcaaatttactgtccaactcacttttacat 42741063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 30182371 - 30182310
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 261  Q
    ||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||    
30182371 ttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaatttattgttt 30182310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 38123741 - 38123664
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||||||||||||||| || || | ||||||||||| |||||||||||||||||||||| |  ||||| |||||||||    
38123741 ttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcacttttacatg 38123664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 40561833 - 40561756
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||||| ||||||||| ||||| | | |||||||||||||| ||||||||||| |||||||  ||||| |||||||||    
40561833 ttgaagttagaaattgtagtttgtaagtctagaattaatttatacactcaaatatattgttcaactcacttttacatg 40561756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 27571872 - 27571929
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttatt 257  Q
    |||||| |||||||||||| |||| ||||||||||| ||||| |||||||| ||||||    
27571872 ttgaagttagaaattggagcttttgattctagaattgattttaacactcaagtttatt 27571929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 369
Target Start/End: Original strand, 40491608 - 40491750
Alignment:
220 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatggaatgaatatatccaaatataaattacttttgccttcaactc 319  Q
    |||| ||||||||||| | |||||||| ||||||||  |||| ||||| ||||||     |||||| |||||||| |||||| || ||| ||||||||||    
40491608 ttttgattctagaattgacttttacacacaaatttaaagtttaactcacttttac-----atgaatgtatccaaaaataaatcac-tttaccttcaactc 40491701  T
320 ccttgtaatcatatatcaattttagataatcaattcacttgaaatcaatt 369  Q
     ||| || ||| | |||||||||| | ||||||||||||  |||||||||    
40491702 acttttagtca-aaatcaattttacagaatcaattcactcaaaatcaatt 40491750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 22310509 - 22310477
Alignment:
225 attctagaattaatttttacactcaaatttatt 257  Q
    ||||||||||||||||||||||| |||||||||    
22310509 attctagaattaatttttacacttaaatttatt 22310477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 33843987 - 33844064
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    ||||||||||||||||||| |||| |||||| |||| ||||| ||||||||||||||||||  ||| |||||||||||    
33843987 ttgaagctagaaattggagcttttgattctaaaattgattttaacactcaaatttattgttcaacttatttttacatg 33844064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 4243406 - 4243473
Alignment:
209 gaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||||||||||  ||||| ||||||||    
4243406 gaaattggagcttttgattctagaattgatttttacactcaaatttattgttctactcacttttacat 4243473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 10185193 - 10185280
Alignment:
189 ttgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||| ||||| |||||| ||||||||| || |||| |||||| |||| || |||||||||||||||||||||| ||||| ||||||||    
10185193 ttgattctaacttgaaggtagaaattgaagcttttgattctaaaattgatctttacactcaaatttattgtttaactcacttttacat 10185280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 2206431 - 2206362
Alignment:
187 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 256  Q
    |||||| ||||  ||||||||| ||||||||| |||| ||||||| ||| |||||| |||||||||||||    
2206431 aattgattctagcttgaagctaaaaattggagcttttgattctaggattgatttttgcactcaaatttat 2206362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 32818459 - 32818368
Alignment:
185 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||||||| |||| ||||||||||||| ||| || |||| ||||||||||| |||||| ||| ||||||||| |||  ||| | |||||||||    
32818459 agaattgattcta-tttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatg 32818368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 33843702 - 33843754
Alignment:
209 gaaattggagttttttattctagaattaatttttacactcaaatttattgttt 261  Q
    |||||||||| ||||||| ||| |||| ||||| |||||||||||||||||||    
33843702 gaaattggagctttttatcctaaaattgattttaacactcaaatttattgttt 33843754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 37439155 - 37439215
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    |||||||||||||||  || |||| |||||| |||| |||||||||||||| |||||||||    
37439155 ttgaagctagaaattatagcttttaattctataattgatttttacactcaattttattgtt 37439215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 48045776 - 48045744
Alignment:
200 ttgaagctagaaattggagttttttattctaga 232  Q
    |||||||||||||||||||||||||||||||||    
48045776 ttgaagctagaaattggagttttttattctaga 48045744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 8330120 - 8330171
Alignment:
194 tctaatttgaagctagaaattggagttttttattctagaattaatttttaca 245  Q
    ||||| ||||||||||||||||||| |||| |||||| |||| |||||||||    
8330120 tctaacttgaagctagaaattggagcttttgattctataattgatttttaca 8330171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 47596359 - 47596300
Alignment:
217 agttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    ||||||| ||| || |||| |||||||||||||||||||||||||  | |||||||||||    
47596359 agtttttgattataaaattgatttttacactcaaatttattgtttagcccatttttacat 47596300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 41751327 - 41751270
Alignment:
220 tttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||| ||||||||||| ||||||| ||| ||||||||||||| | ||| |||||||||    
41751327 ttttgattctagaattgatttttaaacttaaatttattgtttaattcagttttacatg 41751270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 9064241 - 9064317
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    ||||| |||||| ||| ||||||| ||||||||||| ||||| |||||||| ||||  |||  ||||| ||||||||    
9064241 ttgaaactagaatttgtagtttttgattctagaattgattttcacactcaagtttacggttcaactcacttttacat 9064317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 20712664 - 20712715
Alignment:
203 aagctagaaattggagttttttattctagaattaatttttacactcaaattta 255  Q
    |||||||||||||||| |||| |||||| |||| |||||||||||||| ||||    
20712664 aagctagaaattggagctttt-attctataattgatttttacactcaatttta 20712715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 30301076 - 30301013
Alignment:
198 atttgaagctagaaattggagtttttt-attctagaattaatttttacactcaaatttattgtt 260  Q
    ||||||||||||||||||||||||||| |||||||||||  |||| ||||||||||||||||||    
30301076 atttgaagctagaaattggagttttttaattctagaattggttttaacactcaaatttattgtt 30301013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 27266869 - 27266792
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||||||||||||||| || |  | |||| |||||||||||||||||||||||||||||||  ||| | |||||||||    
27266869 ttgaagctagaaattgtagctaatgattcaagaattaatttttacactcaaatttattgttcaactaacttttacatg 27266792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 35264486 - 35264409
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    ||||| ||||||||| ||| |||| ||||||||||| ||||| ||||| ||||||||||||  | |||||||||||||    
35264486 ttgaaactagaaattagagcttttgattctagaattgattttaacacttaaatttattgttcaagtcatttttacatg 35264409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 3776532 - 3776608
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    ||||| |||||||||| || || | |||||||||||||||||||||||||||||| ||| |  ||||| ||||||||    
3776532 ttgaatctagaaattgtagcttctgattctagaattaatttttacactcaaatttgttgctgaactcacttttacat 3776608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 44489235 - 44489299
Alignment:
187 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaa 251  Q
    |||||| ||||| ||||  |||||| |||||||||||||||||| |||| |||||||||||||||    
44489235 aattgattctaacttgatactagaagttggagttttttattctacaattgatttttacactcaaa 44489299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 829906 - 829945
Alignment:
203 aagctagaaattggagttttttattctagaattaattttt 242  Q
    ||||||||||||||||||||||||||||||||| ||||||    
829906 aagctagaaattggagttttttattctagaattgattttt 829945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 36302191 - 36302270
Alignment:
198 atttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    ||||||||||||| ||||||| |||| ||| ||||||| |||||  |||| ||||||||||||  ||||| |||||||||    
36302191 atttgaagctagagattggagattttgattttagaattgattttagcacttaaatttattgttcaactcacttttacatg 36302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 46853594 - 46853533
Alignment:
215 ggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacat 276  Q
    |||| |||| ||||||||||| ||||| ||||||||||||||||||  ||||| ||||||||    
46853594 ggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacat 46853533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 44958676 - 44958621
Alignment:
205 gctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    |||||||||||||| |||| ||||||||| | ||||| |||||||| |||||||||    
44958676 gctagaaattggagcttttgattctagaaatgattttaacactcaactttattgtt 44958621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 20484082 - 20484020
Alignment:
185 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacact 247  Q
    |||||||| |||||||||||||||||| || || ||||| ||||| ||||| ||| |||||||    
20484082 agaattgattctaatttgaagctagaatttagaatttttcattcttgaattgattgttacact 20484020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 23187865 - 23187915
Alignment:
210 aaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    ||||||||| |||| ||||||||||| | |||||||||||||||| |||||    
23187865 aaattggagcttttaattctagaattgaattttacactcaaatttgttgtt 23187915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 35058375 - 35058445
Alignment:
204 agctagaaattggagttttttattctagaattaatttttacactcaaat-ttattgtttgactcattttta 273  Q
    ||||||||||| ||| |||| ||||||||||| ||||| |||||||||| ||||||||  ||||| |||||    
35058375 agctagaaattcgagcttttgattctagaattgattttaacactcaaatattattgttcaactcactttta 35058445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 37703132 - 37703169
Alignment:
223 ttattctagaattaatttttacactcaaatttattgtt 260  Q
    ||||| || |||||||||||||||||||||||||||||    
37703132 ttattttaaaattaatttttacactcaaatttattgtt 37703169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 3845189 - 3845129
Alignment:
200 ttgaagctagaaattggagttttttattctagaatt-aatttttacactcaaatttattgt 259  Q
    ||||| ||||||| ||||| |||| ||||||||||| | |||||||||| |||||||||||    
3845189 ttgaaactagaaactggagcttttgattctagaattgattttttacactaaaatttattgt 3845129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 25359649 - 25359589
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtt 260  Q
    |||||| ||||| ||| |||||||||||||| |||| ||||| |||| || ||||||||||    
25359649 ttgaagttagaatttgtagttttttattctataattgattttcacacacatatttattgtt 25359589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 38332627 - 38332559
Alignment:
202 gaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcattt 270  Q
    ||||||| ||||||||| || | |||||| ||||  | |||||||||||||||||||||  ||||||||    
38332627 gaagctacaaattggagcttctgattctaaaattggtatttacactcaaatttattgttcaactcattt 38332559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 53567968 - 53568050
Alignment:
287 tatccaaatataaattacttttgccttcaactcccttgtaatcatatatcaattttagataatcaattcacttgaaatcaatttt 371  Q
    |||||||| ||||||||||||| | |||||||| ||| |||||| | |||||||||  | ||||||||||||  |||||||||||    
53567968 tatccaaacataaattactttt-cattcaactcacttttaatca-aaatcaattttgtaaaatcaattcactcaaaatcaatttt 53568050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 33608499 - 33608591
Alignment:
185 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||||||| ||||| |||||||||||| ||||||||||| ||||||||||  ||||||||| | ||||| || |||  ||||| |||||||||    
33608499 agaattgattctaacttgaagctagaagttggagtttttcattctagaatggatttttacagttaaattcatagttcaactcacttttacatg 33608591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 42724403 - 42724452
Alignment:
186 gaattgaatctaatttgaagctagaaattggagttttttattctagaatt 235  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||||||    
42724403 gaattgattctaacttgaagctagaaattgaagttttttattctagaatt 42724452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 3043124 - 3043040
Alignment:
172 gttgctttagagaagaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 256  Q
    ||||||| |||  |||||||| |||||  ||||||||||||||||||||||  ||||||||||| ||||||| | ||||| ||||    
3043124 gttgcttaagaatagaattgattctaacatgaagctagaaattggagttttcaattctagaattgatttttatattcaaagttat 3043040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 273
Target Start/End: Original strand, 37877062 - 37877141
Alignment:
194 tctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcattttta 273  Q
    ||||| |||||||||||| || ||||||||  | ||||||| ||||||||  |||||||||||||||| ||||| |||||    
37877062 tctaacttgaagctagaatttagagtttttgctcctagaatgaatttttagcctcaaatttattgtttaactcactttta 37877141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 10898718 - 10898808
Alignment:
185 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||||||| ||||| ||||||  ||||||||||||| || | ||||  ||| |||||||||| |||||||||||||  ||||| |||||||||    
10898718 agaattgattctaacttgaagtaagaaattggagttattgaatcta--attgatttttacacacaaatttattgttcaactcacttttacatg 10898808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 11132873 - 11132804
Alignment:
187 aattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttat 256  Q
    |||||| ||||| ||||||||| |||||| || |||||||| ||||||| || |||||||||||| ||||    
11132873 aattgattctaacttgaagctacaaattgtagctttttattgtagaattgatatttacactcaaaattat 11132804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 24306171 - 24306110
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 261  Q
    |||||| ||||||||| |  |||| |||||| |||| |||||||||||||||||||||||||    
24306171 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgttt 24306110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 24367145 - 24367206
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgttt 261  Q
    |||||| ||||||||| |  |||| |||||| |||| |||||||||||||||||||||||||    
24367145 ttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttattgttt 24367206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 356
Target Start/End: Original strand, 29922956 - 29923059
Alignment:
250 aatttattgtttgactcatttttacatggaatgaatatatccaaatataaattacttttgccttcaactcccttgtaatcatatatcaattttagataat 349  Q
    |||||||| ||| |||||||||| |||| ||||||| |||||||| |||||||||||   | |||||||| ||| || ||| | |||||||||| |||||    
29922956 aatttattttttaactcatttttgcatg-aatgaatgtatccaaacataaattacttca-cattcaactcacttatagtcaaa-atcaattttacataat 29923052  T
350 caattca 356  Q
    |||||||    
29923053 caattca 29923059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 36639947 - 36640024
Alignment:
200 ttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||||||| ||||||| || || | |||||||||||  |||||||||||||||||| ||||   |||| |||||||||    
36639947 ttgaagctggaaattgtagcttctaattctagaattgttttttacactcaaatttaatgttcacctcacttttacatg 36640024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 10859928 - 10859836
Alignment:
185 agaattgaatctaatttgaagctagaaattggagttttttattctagaattaatttttacactcaaatttattgtttgactcatttttacatg 277  Q
    |||||||| ||||| |||||||||||| |||||| ||||   || | | || |||||||  ||||||||||||||||||| | || |||||||    
10859928 agaattgattctaacttgaagctagaatttggagcttttgcctcaacatttgatttttaacctcaaatttattgtttgaccctttcttacatg 10859836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 14299850 - 14299913
Alignment:
242 tacactcaaatttattgtttgactcatttttacatggaatgaatatatccaaatataaattactt 306  Q
    |||||||||| ||| ||||  |||||||||||||| |||||||| |||||||  |||||||||||    
14299850 tacactcaaacttactgttcaactcatttttacat-gaatgaatgtatccaataataaattactt 14299913  T

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Target: scaffold0283 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 18377 - 18426
Alignment:
186 gaattgaatctaatttgaagctagaaattggagttttttattctagaatt 235  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||||||    
18377 gaattgattctaacttgaagctagaaattgaagttttttattctagaatt 18426  T

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Target: scaffold0361 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 14164 - 14132
Alignment:
225 attctagaattaatttttacactcaaatttatt 257  Q
    ||||||||||| |||||||||||||||||||||    
14164 attctagaattgatttttacactcaaatttatt 14132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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