View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_low_10 (Length: 602)
Name: NF9164_low_10
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Original strand, 45687369 - 45687951
Alignment:
| Q |
1 |
gaagattcgatttatctattccgatcgccggaagtcaccggagacaccgtggacttgagacggaaatcatagaaacgtttccgacttttgtttactccac |
100 |
Q |
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| T |
45687369 |
gaagattcgatttatctattccgatcgccggaagtcaccggagacaccgtggacttgagacggaaatcattgaaacgtttccgacttttgtttactccac |
45687468 |
T |
|
| Q |
101 |
cgtgaaaggactcaaaataggaagagctgcactagaatgcgccgtgtgcttaaacgagtttcaagacgatgaaacgctgcgtttgattccgaattgtagc |
200 |
Q |
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| T |
45687469 |
cgtgaaaggactcaaaataggaagagctgcactagaatgcgccgtgtgcttaaacgagtttcaagacgatgaaacgctgcgtttgattccgaattgtagc |
45687568 |
T |
|
| Q |
201 |
cacgtgttccattctcaatgtgtcgatgcttggcttgttaatcactccacgtgtcccgtttgtcgggccaatttgattccaagacccggtgatacctctt |
300 |
Q |
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| T |
45687569 |
cacgtgtttcattctcaatgtgtcgatgcttggcttgttaatcactccacgtgtcccgtttgtcgggctaatttgattccaagacccggtgatacttctt |
45687668 |
T |
|
| Q |
301 |
tcgcttcaatccaaatactggattcaagtttatccgattcagatgacccgacccgaattagtcctattagaggtccaggtattgcagttacgtctcgttc |
400 |
Q |
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| T |
45687669 |
tcgcttcaatccaaatactggattcaagtttatccgattcagatgacccgacccgaattagtcctattagaggtccaggtattgcagttacgtctcgttc |
45687768 |
T |
|
| Q |
401 |
tccatctcctaaggtgaattattcagttacaccgaaccgggctcgaccggttcgatcaagttcaacagggtttaaaattggcaactgggttccgtttcca |
500 |
Q |
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| T |
45687769 |
tccatctccaaaggtgaattattcagttacaccgaaccgggctcgaccggttcgatcaagttcaacagggtttaaaattggcaactgggttccgtttgca |
45687868 |
T |
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| Q |
501 |
cgctcacattcaacaggtcattcactggttcaagaaggagagaatcacgagcggttcactttgagattaccggaggaagtgcg |
583 |
Q |
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| T |
45687869 |
cgctcacattcaacaggtcattcactggttcaagaaggagagaatcacgagcggttcactttgagattaccggaggaagtgcg |
45687951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 27320403 - 27320472
Alignment:
| Q |
133 |
tagaatgcgccgtgtgcttaaacgagtttcaagacgatgaaacgctgcgtttgattccgaattgtagcca |
202 |
Q |
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| T |
27320403 |
tagaatgtgcagtgtgtttaaatgagtttgcggatgatgaaacgctgcgtttgattcctaattgtagcca |
27320472 |
T |
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