View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9164_low_12 (Length: 502)

Name: NF9164_low_12
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9164_low_12
NF9164_low_12
[»] chr4 (22 HSPs)
chr4 (20-229)||(8537288-8537497)
chr4 (272-490)||(8536638-8536855)
chr4 (128-217)||(8595758-8595847)
chr4 (137-217)||(8584535-8584615)
chr4 (353-490)||(19906640-19906775)
chr4 (128-187)||(8613237-8613296)
chr4 (357-470)||(33462928-33463039)
chr4 (420-490)||(8029969-8030038)
chr4 (429-483)||(43477663-43477716)
chr4 (272-353)||(8582564-8582644)
chr4 (372-483)||(39216680-39216791)
chr4 (380-483)||(47575045-47575146)
chr4 (419-490)||(48276284-48276354)
chr4 (429-483)||(13521642-13521695)
chr4 (419-488)||(12874931-12875000)
chr4 (87-126)||(8539465-8539504)
chr4 (128-194)||(8645375-8645439)
chr4 (392-466)||(34560823-34560896)
chr4 (392-470)||(41817180-41817256)
chr4 (227-271)||(8536880-8536924)
chr4 (446-490)||(12878630-12878674)
chr4 (443-483)||(15805287-15805327)
[»] scaffold0011 (1 HSPs)
scaffold0011 (357-490)||(145992-146126)
[»] chr8 (8 HSPs)
chr8 (361-482)||(17953542-17953662)
chr8 (359-470)||(15875261-15875372)
chr8 (380-482)||(40125482-40125583)
chr8 (392-483)||(25367607-25367697)
chr8 (392-483)||(37772089-37772179)
chr8 (429-483)||(43302342-43302395)
chr8 (380-469)||(17026348-17026436)
chr8 (380-469)||(17556840-17556928)
[»] chr7 (7 HSPs)
chr7 (367-489)||(16372798-16372920)
chr7 (367-467)||(4579921-4580021)
chr7 (392-483)||(27256620-27256710)
chr7 (429-483)||(8076433-8076486)
chr7 (429-483)||(9650617-9650670)
chr7 (429-483)||(23866456-23866509)
chr7 (442-483)||(9008543-9008584)
[»] chr2 (12 HSPs)
chr2 (379-483)||(19094079-19094182)
chr2 (367-490)||(42926215-42926337)
chr2 (394-483)||(10160345-10160432)
chr2 (419-490)||(29678157-29678227)
chr2 (380-490)||(30651318-30651426)
chr2 (429-483)||(30658562-30658615)
chr2 (394-483)||(30643507-30643594)
chr2 (392-483)||(6297513-6297603)
chr2 (393-490)||(7737461-7737558)
chr2 (429-483)||(35602310-35602363)
chr2 (397-469)||(13291135-13291207)
chr2 (442-483)||(17453252-17453293)
[»] chr3 (5 HSPs)
chr3 (372-483)||(35456539-35456649)
chr3 (392-483)||(45904166-45904255)
chr3 (392-483)||(10585810-10585900)
chr3 (430-483)||(28125513-28125565)
chr3 (429-470)||(49019801-49019842)
[»] scaffold0045 (1 HSPs)
scaffold0045 (358-483)||(83437-83560)
[»] chr1 (7 HSPs)
chr1 (357-490)||(7882385-7882516)
chr1 (380-490)||(16833874-16833983)
chr1 (419-490)||(23192453-23192523)
chr1 (392-483)||(41097579-41097669)
chr1 (392-470)||(33055440-33055517)
chr1 (429-470)||(40233021-40233062)
chr1 (442-470)||(17214110-17214138)
[»] scaffold0002 (1 HSPs)
scaffold0002 (380-482)||(4471-4572)
[»] chr5 (6 HSPs)
chr5 (380-490)||(39518799-39518907)
chr5 (380-490)||(39523438-39523546)
chr5 (429-483)||(12044793-12044846)
chr5 (385-483)||(31731921-31732018)
chr5 (429-483)||(21323632-21323686)
chr5 (442-483)||(13301158-13301199)
[»] chr6 (7 HSPs)
chr6 (429-470)||(15991307-15991348)
chr6 (374-483)||(17913995-17914103)
chr6 (394-483)||(24588803-24588890)
chr6 (419-490)||(14509374-14509442)
chr6 (390-470)||(6112399-6112478)
chr6 (429-483)||(2760042-2760095)
chr6 (367-427)||(22610008-22610068)
[»] scaffold1450 (1 HSPs)
scaffold1450 (87-126)||(1548-1587)
[»] scaffold0628 (1 HSPs)
scaffold0628 (395-486)||(6770-6859)
[»] scaffold0020 (1 HSPs)
scaffold0020 (392-479)||(861-947)
[»] scaffold0060 (1 HSPs)
scaffold0060 (385-466)||(47586-47666)
[»] scaffold0041 (1 HSPs)
scaffold0041 (442-483)||(35374-35415)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 8537497 - 8537288
Alignment:
Q  20 tgatgcccattgaatggcaaaggatttactttgatgaagatttaaatttgatttagctcttacaattacttgaaagagctagaacttgacattattgatt 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8537497 tgatgcccattgaatggcaaaggatttcctttgatgaagatttaaatttgatttagctcttacaattacttgaaagagctagaacttgacattattgatt 8537398  T
Q  120 atttgcaatacaagccttgtgaatcttctgaaaaggtgttcattatatctatatatactgtgaataatgaaggaaaagaatttacatttttatgtaaatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8537397 atttgcaatacaagccttgtgaatcttctgaaaaggtgttcattatatctatatatattgtgaataatgaaggaaaagaatttacatttttatgtaaatt 8537298  T
Q  220 gcatttcctg 229  Q
    ||||||||||    
T  8537297 gcatttcctg 8537288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 272 - 490
Target Start/End: Complemental strand, 8536855 - 8536638
Alignment:
Q  272 ttgcttcctattcctttggtttatttgaacatattgctatgactattgaaagttgtatatatgcacaatttttcatgtttgagatcatagtccctttttt 371  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||     
T  8536855 ttgcttcctattcctttggtttatttgaacagattgctatgactattgaaagttgtatgtatgcacaatttttcatgtttgagaccatagtaccttttt- 8536757  T
Q  372 ggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtct 471  Q
    ||||||| |||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8536756 ggtataatgtccattcagaattaagaatggttttaagagcataatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtcc 8536657  T
Q  472 cattttcggtatgatgtcc 490  Q
    |||||||||||||||||||    
T  8536656 cattttcggtatgatgtcc 8536638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 8595847 - 8595758
Alignment:
Q  128 tacaagccttgtgaatcttctgaaaaggtgttcattatatctatatatactgtgaataatgaaggaaaagaatttacatttttatgtaaa 217  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||||||||| |||| |||||||||||||| |||||| |||||||    
T  8595847 tacaaggcttgtgaatcttctgaaaagctgttcattatgtctatatatactgtgagtaatcaaggaaaagaatttgcattttaatgtaaa 8595758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 8584615 - 8584535
Alignment:
Q  137 tgtgaatcttctgaaaaggtgttcattatatctatatatactgtgaataatgaaggaaaagaatttacatttttatgtaaa 217  Q
    ||||||||||  ||| || | |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  8584615 tgtgaatcttacgaatagctcttcattatgtctatatatactgtgaataatcaaggaaaagaatttgcatttttatgtaaa 8584535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 490
Target Start/End: Complemental strand, 19906775 - 19906640
Alignment:
Q  353 agatcatagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataa 452  Q
    |||||||||||||||||| ||| ||| || ||||| ||  ||||||||   |||||  | || || |||||||||||||| ||||||| | |||||||||    
T  19906775 agatcatagtcccttttt-ggtttaatgttccttcggaattaagaatgaccttaagttcatagtcccttcgatatttttaagtcctttga-aataaataa 19906678  T
Q  453 tattttaagatcatagtctcattttcggtatgatgtcc 490  Q
    |||||||||||||||||| | |||||||||| ||||||    
T  19906677 tattttaagatcatagtccctttttcggtataatgtcc 19906640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 8613237 - 8613296
Alignment:
Q  128 tacaagccttgtgaatcttctgaaaaggtgttcattatatctatatatactgtgaataat 187  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||||||| ||||||    
T  8613237 tacaaggcttgtgaatcttctgaaaagctgttcattatgtctatatatactgtaaataat 8613296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 470
Target Start/End: Original strand, 33462928 - 33463039
Alignment:
Q  357 catagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatatt 456  Q
    |||||||||||||  ||| ||| |||||||||||  ||||||| || |||||  | ||||| |||||||||||||||||||||  | ||||||||||| |    
T  33462928 catagtcccttttc-ggtttaatgtcccttcagaattaagaatagtcttaagttcataatcccttcgatatttttatgtccttcga-aataaataataat 33463025  T
Q  457 ttaagatcatagtc 470  Q
    ||||||||||||||    
T  33463026 ttaagatcatagtc 33463039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 490
Target Start/End: Original strand, 8029969 - 8030038
Alignment:
Q  420 ttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtatgatgtcc 490  Q
    ||||||||||||||||||||   |||||||||||| ||||||||||| ||||| |||||||||| ||||||    
T  8029969 ttcgatatttttatgtccttcg-gaataaataataatttaagatcattgtctctttttcggtataatgtcc 8030038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 43477663 - 43477716
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||    
T  43477663 tttatgtccatttagaataaataatattttaagatcatagtc-cattttcggtat 43477716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 8582644 - 8582564
Alignment:
Q  272 ttgcttcctattcctttggtttatttgaacata-ttgctatgactattgaaagttgtatatatgcacaatttttcatgtttga 353  Q
    |||||||| |||| ||||||||||||||||| | |||| |||||||||||||| ||  ||||||| |||||| ||||||||||    
T  8582644 ttgcttccaattcttttggtttatttgaacagatttgcgatgactattgaaagctg--tatatgcgcaatttgtcatgtttga 8582564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 483
Target Start/End: Original strand, 39216680 - 39216791
Alignment:
Q  372 ggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtct 471  Q
    ||||||| ||||||||  |  |||||| ||| || ||||| || || |||| |||||||||||||| ||  |||||||||||||||||| |||||||||     
T  39216680 ggtataatgtcccttcgaaattaagaaaggtcttgagagcatagtcccttcaatatttttatgtccctttggaataaataatattttaaaatcatagtcc 39216779  T
Q  472 cattttcggtat 483  Q
      ||||||||||    
T  39216780 atttttcggtat 39216791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 483
Target Start/End: Complemental strand, 47575146 - 47575045
Alignment:
Q  380 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 479  Q
    |||||||||||   ||||||||| |||||||| || || |||| || | |||||||| ||| |||||||| |||||||||||||||||||| | ||||||    
T  47575146 gtcccttcagaatcaagaatggtcttaagagcatagtcccttcaat-tatttatgtcattttagaataaagaatattttaagatcatagtc-ccttttcg 47575049  T
Q  480 gtat 483  Q
    ||||    
T  47575048 gtat 47575045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 490
Target Start/End: Original strand, 48276284 - 48276354
Alignment:
Q  419 cttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtatgatgtcc 490  Q
    |||||||||||||||||||||   |||||||||||| ||||||||||||||| | |||||||| | ||||||    
T  48276284 cttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtccctttttcggtgtaatgtcc 48276354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 13521642 - 13521695
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    |||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||    
T  13521642 tttatgtctttttagaataaataatattttaagatcatagtc-ccttttcggtat 13521695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 12875000 - 12874931
Alignment:
Q  419 cttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtatgatgt 488  Q
    ||||||||||||| ||||| ||   |||||||||||||||||||||||| || | |||||||||| ||||    
T  12875000 cttcgatatttttgtgtcccttcgaaataaataatattttaagatcataatccctttttcggtataatgt 12874931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 8539504 - 8539465
Alignment:
Q  87 acttgaaagagctagaacttgacattattgattatttgca 126  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  8539504 acttgaaagagctagaacttcacattgttgattatttgca 8539465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 8645439 - 8645375
Alignment:
Q  128 tacaagccttgtgaatcttctgaaaaggtgttcattatatctatatatactgtgaataatgaaggaa 194  Q
    |||||| ||||||||||||||| |||| |||||||  | |||||||||||||| |||||| ||||||    
T  8645439 tacaaggcttgtgaatcttctgcaaagctgttcat--tgtctatatatactgtaaataatcaaggaa 8645375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 34560896 - 34560823
Alignment:
Q  392 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 466  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || |||||||||||||||||||||||||    
T  34560896 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcat 34560823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 470
Target Start/End: Complemental strand, 41817256 - 41817180
Alignment:
Q  392 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 470  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || |||||||||||||||||||||||||||||    
T  41817256 ataagaatggtcttaagagcatagtc-cttcaat-tgtttatgtctctttagaataaataatattttaagatcatagtc 41817180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 8536924 - 8536880
Alignment:
Q  227 ctgtgtgtgaatacattttgctttctctgttggaatcaaggaaat 271  Q
    |||||||||| ||| |||| || ||||||||||||||||||||||    
T  8536924 ctgtgtgtgagtacgtttttctctctctgttggaatcaaggaaat 8536880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 490
Target Start/End: Complemental strand, 12878674 - 12878630
Alignment:
Q  446 taaataatattttaagatcatagtctcattttcggtatgatgtcc 490  Q
    ||||||||||||||||||||||||| | ||||| |||| ||||||    
T  12878674 taaataatattttaagatcatagtccctttttcagtataatgtcc 12878630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Original strand, 15805287 - 15805327
Alignment:
Q  443 gaataaataatattttaagatcatagtctcattttcggtat 483  Q
    |||||||||||||||||| | ||||||||| ||||||||||    
T  15805287 gaataaataatattttaataccatagtctctttttcggtat 15805327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 357 - 490
Target Start/End: Original strand, 145992 - 146126
Alignment:
Q  357 catagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatatt 456  Q
    |||||||||||||| ||||||| |||| |||| | |||||||||||||||||||| || || |||||||||||||||||||||| |||||| ||||||||    
T  145992 catagtccctttttcggtataatgtccattcaaaaataagaatggttttaagagcatagtcccttcgatatttttatgtcctttcagaatatataatatt 146091  T
Q  457 ttaagatcatagtctc-attttcggtatgatgtcc 490  Q
    |||||||||||| |||  |||||||||| ||||||    
T  146092 ttaagatcatagcctcttttttcggtataatgtcc 146126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 361 - 482
Target Start/End: Original strand, 17953542 - 17953662
Alignment:
Q  361 gtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaa 460  Q
    |||||||||| ||||||| ||||||||  |  |||||||||| |||||||| || || ||||||||||||||||||| ||||||||||||||||||||||    
T  17953542 gtccctttttcggtataatgtcccttccaaattaagaatggtcttaagagcatagtcccttcgatatttttatgtcccttaagaataaataatattttaa 17953641  T
Q  461 gatcatagtctcattttcggta 482  Q
     |||||||| || |||||||||    
T  17953642 catcatagt-tccttttcggta 17953662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 359 - 470
Target Start/End: Original strand, 15875261 - 15875372
Alignment:
Q  359 tagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatatttt 458  Q
    |||||| ||||| |||||||  ||||||| ||  ||| |||||| |||||||  || || ||| ||||||||||||||| || |||||||||||||||||    
T  15875261 tagtccttttttcggtataatctcccttcggaattaaaaatggtattaagagtatagtccctttgatatttttatgtcccttcagaataaataatatttt 15875360  T
Q  459 aagatcatagtc 470  Q
    ||||||||||||    
T  15875361 aagatcatagtc 15875372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 482
Target Start/End: Original strand, 40125482 - 40125583
Alignment:
Q  380 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 479  Q
    |||||||| ||  |||||||||| |||||  | || || |||||||||||||||||||||  | ||||||||||| ||||||||||||||| | ||||||    
T  40125482 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttcga-aataaataataatttaagatcatagtccctttttcg 40125580  T
Q  480 gta 482  Q
    |||    
T  40125581 gta 40125583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 483
Target Start/End: Original strand, 25367607 - 25367697
Alignment:
Q  392 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | ||||||||||    
T  25367607 ataagaatggtcttaagagcatagtcccttc-atttatttatgtctctttagaataaataatattttaagatcatggtccctttttcggtat 25367697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 483
Target Start/End: Complemental strand, 37772179 - 37772089
Alignment:
Q  392 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | ||||||||||    
T  37772179 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtccctttttcggtat 37772089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 43302342 - 43302395
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    |||||||||||| |||||||| |||||||||||||||||||| | ||||||||||    
T  43302342 tttatgtccttttagaataaagaatattttaagatcatagtc-ccttttcggtat 43302395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 469
Target Start/End: Complemental strand, 17026436 - 17026348
Alignment:
Q  380 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagt 469  Q
    |||||||| ||  |||||||||| |||||  | || || ||||||||| |||||||||||   |||||||||||| ||||||||||||||    
T  17026436 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatgtttatgtccttcg-gaataaataataatttaagatcatagt 17026348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 469
Target Start/End: Complemental strand, 17556928 - 17556840
Alignment:
Q  380 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagt 469  Q
    |||||||| ||  |||||||||| |||||  | || || ||||||||| |||||||||||   |||||||||||| ||||||||||||||    
T  17556928 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatgtttatgtccttcg-gaataaataataatttaagatcatagt 17556840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 367 - 489
Target Start/End: Complemental strand, 16372920 - 16372798
Alignment:
Q  367 tttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 466  Q
    |||||||||||| |||||||| ||  |||||||||| |||||| | || || ||||||||||||||||||| ||  |||||||||||| |||||||||||    
T  16372920 tttttggtataatgtcccttcggaattaagaatggtcttaagaacatagtcccttcgatatttttatgtcccttcggaataaataatagtttaagatcat 16372821  T
Q  467 agtctcattttcggtatgatgtc 489  Q
    |||| | |||||||||| |||||    
T  16372820 agtccctttttcggtataatgtc 16372798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 467
Target Start/End: Complemental strand, 4580021 - 4579921
Alignment:
Q  367 tttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 466  Q
    |||| ||||||| |||  ||||||  ||||||||||||||||||| || || |||||||| ||||| |||| ||   |||||||||||||||||||||||    
T  4580021 ttttcggtataatgtcatttcagaattaagaatggttttaagagcatagtcccttcgataattttaagtcccttcgaaataaataatattttaagatcat 4579922  T
Q  467 a 467  Q
    |    
T  4579921 a 4579921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 483
Target Start/End: Complemental strand, 27256710 - 27256620
Alignment:
Q  392 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | ||||||||||    
T  27256710 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtccctttttcggtat 27256620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 8076486 - 8076433
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    |||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||    
T  8076486 tttatgtctttttagaataaataatattttaagatcatagtc-ccttttcggtat 8076433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 9650617 - 9650670
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    |||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||    
T  9650617 tttatgtctttttagaataaataatattttaagatcatagtc-ccttttcggtat 9650670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 23866509 - 23866456
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    |||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||    
T  23866509 tttatgtctttttagaataaataatattttaagatcatagtc-ccttttcggtat 23866456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Complemental strand, 9008584 - 9008543
Alignment:
Q  442 agaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||||||||||||||||||||||| | |||| |||||    
T  9008584 agaataaataatattttaagatcatagtcccctttttggtat 9008543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 379 - 483
Target Start/End: Original strand, 19094079 - 19094182
Alignment:
Q  379 cgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttc 478  Q
    ||||||||| ||  |||||||||| |||||||| || ||  ||| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||    
T  19094079 cgtcccttcggaattaagaatggtcttaagagcatactcctttcaatatttttatgtcctttcagaataaataatattttaagatcataatc-cattttc 19094177  T
Q  479 ggtat 483  Q
    |||||    
T  19094178 ggtat 19094182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 490
Target Start/End: Original strand, 42926215 - 42926337
Alignment:
Q  367 tttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 466  Q
    |||| ||| ||| |||||||||||  |||||||||| |||||  | || || ||||||||||||||||||||||  |||||||||||| |||||||||||    
T  42926215 ttttcggtttaatgtcccttcagaattaagaatggtattaagttcatagtcccttcgatatttttatgtccttt-ggaataaataataatttaagatcat 42926313  T
Q  467 agtctcattttcggtatgatgtcc 490  Q
    ||||   |||||||||| ||||||    
T  42926314 agtccttttttcggtataatgtcc 42926337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 483
Target Start/End: Original strand, 10160345 - 10160432
Alignment:
Q  394 aagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||| |||||||| || || |||| || | |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||    
T  10160345 aagaatggtcttaagagcatagtcccttcaat-tatttatgtccttttagaataaagaatattttaagatcatagtc-cattttcggtat 10160432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 490
Target Start/End: Complemental strand, 29678227 - 29678157
Alignment:
Q  419 cttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtatgatgtcc 490  Q
    |||||||||||||||||||||   |||||||||||| ||||||||||||||| | |||||||||| ||||||    
T  29678227 cttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtccctttttcggtataatgtcc 29678157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 490
Target Start/End: Complemental strand, 30651426 - 30651318
Alignment:
Q  380 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 479  Q
    |||||||| ||  |||||||||| |||||  | || || |||||||||||||||||||||   |||||||||||| ||||||||||||||| | ||||||    
T  30651426 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtc-ccttttcg 30651329  T
Q  480 gtatgatgtcc 490  Q
    |||| ||||||    
T  30651328 gtataatgtcc 30651318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 30658615 - 30658562
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  30658615 tttatgtccttttagaataaataatattttaagatcatagtc-ccttttcggtat 30658562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 483
Target Start/End: Complemental strand, 30643594 - 30643507
Alignment:
Q  394 aagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||| |||||||| || || |||| || | |||||||||||| |||||||| |||||||||||||||||||| | ||||||||||    
T  30643594 aagaatggtcttaagagcatagtcccttcaat-tatttatgtccttttagaataaagaatattttaagatcatagtc-ccttttcggtat 30643507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 483
Target Start/End: Original strand, 6297513 - 6297603
Alignment:
Q  392 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | ||||| ||||    
T  6297513 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtccctttttcagtat 6297603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 490
Target Start/End: Original strand, 7737461 - 7737558
Alignment:
Q  393 taagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtct-cattttcggtatgatgtcc 490  Q
    |||||||||| |||||  | || |||||||||||||||||||||| ||  |||||||||||  ||||||||||  |||| | |||||||||| ||||||    
T  7737461 taagaatggtcttaagttcatagtctcttcgatatttttatgtcc-ttcggaataaataattatttaagatcacggtctcccttttcggtataatgtcc 7737558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 483
Target Start/End: Complemental strand, 35602363 - 35602310
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    |||||||| ||| |||||||| |||||||||||||||||||| | ||||||||||    
T  35602363 tttatgtctttttagaataaagaatattttaagatcatagtc-ccttttcggtat 35602310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 469
Target Start/End: Original strand, 13291135 - 13291207
Alignment:
Q  397 aatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataata-ttttaagatcatagt 469  Q
    |||||| |||||||  ||||| |||||||| ||| |||||| ||||||||||||| || |||||||||||||||    
T  13291135 aatggtcttaagagtataatcccttcgataattt-atgtcccttaagaataaatagtatttttaagatcatagt 13291207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Original strand, 17453252 - 17453293
Alignment:
Q  442 agaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||||||||||||| ||||||||| | ||||||||||    
T  17453252 agaataaataatattttaatatcatagtccctttttcggtat 17453293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 483
Target Start/End: Original strand, 35456539 - 35456649
Alignment:
Q  372 ggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtct 471  Q
    ||||||| |||||||| ||  |||||||||| |||||||| ||||||||| |||| ||| ||||||  | | ||||||||||||||||||||||||||||    
T  35456539 ggtataatgtcccttcggaattaagaatggtcttaagagcataatctctttgatagttt-atgtcccatcaaaataaataatattttaagatcatagtct 35456637  T
Q  472 cattttcggtat 483  Q
      ||||||||||    
T  35456638 ttttttcggtat 35456649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 483
Target Start/End: Original strand, 45904166 - 45904255
Alignment:
Q  392 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| ||||||||||||    
T  45904166 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtc-cattttcggtat 45904255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 483
Target Start/End: Original strand, 10585810 - 10585900
Alignment:
Q  392 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||||| |||||||| || || |||| || | ||||||||   | ||||||||||||||||||||||||| ||| | ||||||||||    
T  10585810 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctcattagaataaataatattttaagatcatggtccctttttcggtat 10585900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 483
Target Start/End: Complemental strand, 28125565 - 28125513
Alignment:
Q  430 ttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    |||||||  ||||||||||||||||| |||||||||||||| || |||||||||    
T  28125565 ttatgtctcttaagaataaataatatcttaagatcatagtc-cactttcggtat 28125513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Complemental strand, 49019842 - 49019801
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtc 470  Q
    ||||||||| || | |||||||||||||||||||||||||||    
T  49019842 tttatgtccctttaaaataaataatattttaagatcatagtc 49019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 483
Target Start/End: Complemental strand, 83560 - 83437
Alignment:
Q  358 atagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattt 457  Q
    ||||||||||| | ||||||  |||||||||||   ||||| ||| |||||||| || || |||| ||| ||| || |||||| ||||||||||||||||    
T  83560 atagtccctttgtcggtatattgtcccttcagaatcaagaacggtcttaagagcatagtcccttcaataattt-atatccttttagaataaataatattt 83462  T
Q  458 taagatcatagtctcattttcggtat 483  Q
    ||||||||||||| ||||||||||||    
T  83461 taagatcatagtc-cattttcggtat 83437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 357 - 490
Target Start/End: Complemental strand, 7882516 - 7882385
Alignment:
Q  357 catagtcccttttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatatt 456  Q
    |||||||||||||| ||||||| |||||||||||  |||||||||| |||||  |  | || || |||||||||||||||| ||  |||| ||||||| |    
T  7882516 catagtccctttttcggtataatgtcccttcagaattaagaatggtcttaagttcagagtccctccgatatttttatgtcc-ttcggaatgaataatact 7882418  T
Q  457 ttaagatcatagtctcattttcggtatgatgtcc 490  Q
    |||||||||||||| | |||||||||| ||||||    
T  7882417 ttaagatcatagtc-ccttttcggtataatgtcc 7882385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 490
Target Start/End: Complemental strand, 16833983 - 16833874
Alignment:
Q  380 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 479  Q
    |||||||| ||  |||||||||| |||||  | || || ||||||||||||||||||||||  |||||||||||| ||||||||||||||  | ||||||    
T  16833983 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtcctttg-gaataaataataatttaagatcatagttcctttttcg 16833885  T
Q  480 gtatgatgtcc 490  Q
    |||| ||||||    
T  16833884 gtataatgtcc 16833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 490
Target Start/End: Original strand, 23192453 - 23192523
Alignment:
Q  419 cttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtatgatgtcc 490  Q
    |||||||||||||||||||||   |||||||||||| ||||||||||||||  |||||||||||| ||||||    
T  23192453 cttcgatatttttatgtccttcc-gaataaataataatttaagatcatagtaccattttcggtataatgtcc 23192523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 483
Target Start/End: Original strand, 41097579 - 41097669
Alignment:
Q  392 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | ||||||||||    
T  41097579 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtccctttttcggtat 41097669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 470
Target Start/End: Complemental strand, 33055517 - 33055440
Alignment:
Q  392 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 470  Q
    ||||||||||| |||||||  || || |||| || | ||||||||  || |||||||||||||||||||||||||||||    
T  33055517 ataagaatggtgttaagaggatagtcccttcaat-tgtttatgtctctttagaataaataatattttaagatcatagtc 33055440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Original strand, 40233021 - 40233062
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtc 470  Q
    ||||||||  || |||||||||||||||||||||||||||||    
T  40233021 tttatgtctctttagaataaataatattttaagatcatagtc 40233062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 470
Target Start/End: Original strand, 17214110 - 17214138
Alignment:
Q  442 agaataaataatattttaagatcatagtc 470  Q
    |||||||||||||||||||||||||||||    
T  17214110 agaataaataatattttaagatcatagtc 17214138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 482
Target Start/End: Complemental strand, 4572 - 4471
Alignment:
Q  380 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 479  Q
    |||||||| ||  |||||||||| |||||  | || || |||||||||||||||||||||   |||||||||||| ||||||||||||||| | ||||||    
T  4572 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtccctttttcg 4474  T
Q  480 gta 482  Q
    |||    
T  4473 gta 4471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 490
Target Start/End: Complemental strand, 39518907 - 39518799
Alignment:
Q  380 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 479  Q
    |||||||| ||  |||||||||| |||||  | || || |||||||||||||||||||||   |||||||||||| ||||||||||||||| | ||||||    
T  39518907 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtc-ccttttcg 39518810  T
Q  480 gtatgatgtcc 490  Q
    |||| ||||||    
T  39518809 gtataatgtcc 39518799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 490
Target Start/End: Complemental strand, 39523546 - 39523438
Alignment:
Q  380 gtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 479  Q
    |||||||| ||  |||||||||| |||||  | || || |||||||||||||||||||||   |||||||||||| ||||||||||||||| | ||||||    
T  39523546 gtcccttcggaattaagaatggtcttaagttcatagtcccttcgatatttttatgtccttcg-gaataaataataatttaagatcatagtc-ccttttcg 39523449  T
Q  480 gtatgatgtcc 490  Q
    |||| ||||||    
T  39523448 gtataatgtcc 39523438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 12044793 - 12044846
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    |||||||||||| |||||||| |||||||||||||||||||| | ||||||||||    
T  12044793 tttatgtccttttagaataaagaatattttaagatcatagtc-ccttttcggtat 12044846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 483
Target Start/End: Complemental strand, 31732018 - 31731921
Alignment:
Q  385 ttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    |||||| ||||||||||| |||||||| ||  | |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | ||||||||||    
T  31732018 ttcagaaataagaatggtcttaagagcatagccccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtccctttttcggtat 31731921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 21323632 - 21323686
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||  || ||||||||| ||||||||||||||| ||||| ||||||||||    
T  21323632 tttatgtctctttagaataaatcatattttaagatcatggtctctttttcggtat 21323686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Original strand, 13301158 - 13301199
Alignment:
Q  442 agaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||||||||||||||||||| ||| | ||||||||||    
T  13301158 agaataaataatattttaagatcatggtccctttttcggtat 13301199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 470
Target Start/End: Original strand, 15991307 - 15991348
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtc 470  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  15991307 tttatgtcccttaagaataaataatattttaagatcatagtc 15991348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 483
Target Start/End: Complemental strand, 17914103 - 17913995
Alignment:
Q  374 tataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctca 473  Q
    ||||| |||||||| ||  |||||||||| ||||| || || || ||| |||||| |||||| |||    |||||||||||||||||||||||||||||     
T  17914103 tataatgtcccttcggaattaagaatggtcttaagtgcatagtccctttgatattattatgttcttcgc-aataaataatattttaagatcatagtctct 17914005  T
Q  474 ttttcggtat 483  Q
    ||||||||||    
T  17914004 ttttcggtat 17913995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 483
Target Start/End: Original strand, 24588803 - 24588890
Alignment:
Q  394 aagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||| |||||||| ||||| |||| || | |||||||| ||| |||||||||||||||||||||||| |||| | ||||||||||    
T  24588803 aagaatggtcttaagagcataatcccttcaat-tatttatgtctttttagaataaataatattttaagatcacagtc-ctttttcggtat 24588890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 490
Target Start/End: Complemental strand, 14509442 - 14509374
Alignment:
Q  419 cttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtatgatgtcc 490  Q
    |||||||||||||||||||||   | |||||||||| ||||||||||||||||| |||||||||| ||||||    
T  14509442 cttcgatatttttatgtccttc--gtataaataataatttaagatcatagtctc-ttttcggtataatgtcc 14509374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 470
Target Start/End: Original strand, 6112399 - 6112478
Alignment:
Q  390 atataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtc 470  Q
    ||||||||||||| |||||||| || || |||| || | ||||||||  |  |||||||||||||||||||||||||||||    
T  6112399 atataagaatggtcttaagagcatagtcccttcaat-tgtttatgtctctctagaataaataatattttaagatcatagtc 6112478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 2760042 - 2760095
Alignment:
Q  429 tttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||  || ||||||||||||||||||||| ||||||| ||||||||||||    
T  2760042 tttatgtctctttagaataaataatattttaagaccatagtc-cattttcggtat 2760095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 427
Target Start/End: Complemental strand, 22610068 - 22610008
Alignment:
Q  367 tttttggtataacgtcccttcagatataagaatggttttaagagcgtaatctcttcgatat 427  Q
    |||| ||||||| ||| |||| ||  ||||||||||||||||||| || ||||||||||||    
T  22610068 ttttcggtataatgtcacttcggaattaagaatggttttaagagcatagtctcttcgatat 22610008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1450 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1450
Description:

Target: scaffold1450; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 1587 - 1548
Alignment:
Q  87 acttgaaagagctagaacttgacattattgattatttgca 126  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  1587 acttgaaagagctagaacttcacattattgattatttgca 1548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 486
Target Start/End: Complemental strand, 6859 - 6770
Alignment:
Q  395 agaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcggtatgat 486  Q
    ||||||||||||||||| || ||||||| || ||||||||||  || ||||||||||| ||||||||||||| ||| | | |||||||||||    
T  6859 agaatggttttaagagcatagtctcttc-at-tttttatgtctctttagaataaataacattttaagatcatggtcccttgttcggtatgat 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 479
Target Start/End: Original strand, 861 - 947
Alignment:
Q  392 ataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcatagtctcattttcg 479  Q
    ||||||||||| |||||||| || || |||| || | ||||||||  || ||||||||||||||||||||||||| ||| | ||||||    
T  861 ataagaatggtcttaagagcatagtcccttcaat-tatttatgtctctttagaataaataatattttaagatcatggtccctttttcg 947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 466
Target Start/End: Original strand, 47586 - 47666
Alignment:
Q  385 ttcagatataagaatggttttaagagcgtaatctcttcgatatttttatgtcctttaagaataaataatattttaagatcat 466  Q
    |||||| ||||||||||| |||||||| ||  | |||| || | ||||||||  || |||||||||||||||||||||||||    
T  47586 ttcagaaataagaatggtcttaagagcatagccccttcaat-tatttatgtctctttagaataaataatattttaagatcat 47666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Original strand, 35374 - 35415
Alignment:
Q  442 agaataaataatattttaagatcatagtctcattttcggtat 483  Q
    ||||||||||||||||||||||||| ||| | ||||||||||    
T  35374 agaataaataatattttaagatcatggtccctttttcggtat 35415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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