View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9164_low_13 (Length: 449)

Name: NF9164_low_13
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9164_low_13
NF9164_low_13
[»] chr1 (27 HSPs)
chr1 (74-445)||(26466429-26466806)
chr1 (285-445)||(27569416-27569576)
chr1 (87-439)||(32106808-32107164)
chr1 (72-226)||(27569583-27569741)
chr1 (79-439)||(25230843-25231205)
chr1 (79-445)||(16246909-16247278)
chr1 (244-439)||(19498409-19498604)
chr1 (289-439)||(44466118-44466268)
chr1 (289-439)||(50117138-50117288)
chr1 (289-438)||(6561543-6561692)
chr1 (244-439)||(36075902-36076097)
chr1 (305-439)||(23914385-23914519)
chr1 (289-439)||(29356063-29356213)
chr1 (290-373)||(21943738-21943821)
chr1 (289-439)||(41454370-41454520)
chr1 (289-373)||(37015515-37015599)
chr1 (289-439)||(5078471-5078621)
chr1 (289-438)||(13629954-13630103)
chr1 (79-211)||(50116921-50117053)
chr1 (312-439)||(7980590-7980717)
chr1 (279-361)||(38692301-38692383)
chr1 (289-389)||(44620479-44620579)
chr1 (79-178)||(12649740-12649839)
chr1 (289-439)||(38775489-38775639)
chr1 (289-373)||(3983713-3983798)
chr1 (289-373)||(3947837-3947921)
chr1 (79-211)||(38692099-38692231)
[»] chr5 (33 HSPs)
chr5 (87-439)||(13158187-13158542)
chr5 (83-445)||(20285536-20285900)
chr5 (95-445)||(43178391-43178744)
chr5 (165-345)||(23028693-23028877)
chr5 (289-439)||(1035926-1036076)
chr5 (279-439)||(13567467-13567627)
chr5 (289-439)||(34123303-34123453)
chr5 (289-439)||(27867221-27867371)
chr5 (289-438)||(7800384-7800533)
chr5 (279-439)||(18537697-18537857)
chr5 (289-439)||(25896475-25896625)
chr5 (289-439)||(7021253-7021403)
chr5 (309-439)||(30353899-30354029)
chr5 (276-439)||(24050937-24051100)
chr5 (289-439)||(34078315-34078465)
chr5 (289-438)||(11032827-11032976)
chr5 (79-211)||(4203098-4203230)
chr5 (290-445)||(21999593-21999748)
chr5 (312-439)||(33993804-33993931)
chr5 (289-389)||(38859565-38859665)
chr5 (289-439)||(31098310-31098460)
chr5 (289-439)||(37820254-37820404)
chr5 (79-219)||(1035710-1035850)
chr5 (79-211)||(18537494-18537626)
chr5 (72-176)||(31098087-31098191)
chr5 (289-439)||(28885783-28885933)
chr5 (89-211)||(34078550-34078672)
chr5 (79-178)||(7800168-7800267)
chr5 (89-211)||(11032621-11032743)
chr5 (89-211)||(37820048-37820170)
chr5 (79-211)||(13567261-13567393)
chr5 (351-439)||(23030144-23030232)
chr5 (79-211)||(27867005-27867137)
[»] chr7 (16 HSPs)
chr7 (79-445)||(21799532-21799900)
chr7 (83-387)||(43827767-43828072)
chr7 (279-439)||(19046634-19046794)
chr7 (79-445)||(8400123-8400490)
chr7 (289-439)||(42499944-42500094)
chr7 (289-389)||(15060200-15060300)
chr7 (279-373)||(618115-618209)
chr7 (289-439)||(18105923-18106073)
chr7 (294-439)||(36186224-36186368)
chr7 (79-211)||(47061651-47061783)
chr7 (289-439)||(30787074-30787224)
chr7 (289-439)||(43623510-43623660)
chr7 (289-439)||(45763914-45764064)
chr7 (312-439)||(47061438-47061565)
chr7 (396-438)||(3761435-3761477)
chr7 (89-211)||(18106156-18106278)
[»] chr3 (35 HSPs)
chr3 (79-439)||(33399074-33399437)
chr3 (289-438)||(6505333-6505482)
chr3 (289-439)||(14399091-14399241)
chr3 (289-439)||(11389364-11389514)
chr3 (289-439)||(21955614-21955764)
chr3 (289-439)||(46992622-46992772)
chr3 (277-389)||(48250230-48250342)
chr3 (289-439)||(13747098-13747248)
chr3 (289-439)||(36816891-36817041)
chr3 (289-438)||(50953812-50953961)
chr3 (289-439)||(9429208-9429358)
chr3 (289-389)||(7842391-7842491)
chr3 (290-373)||(78392-78475)
chr3 (312-439)||(29929925-29930052)
chr3 (312-439)||(29979079-29979206)
chr3 (289-439)||(23442505-23442654)
chr3 (289-438)||(16445158-16445307)
chr3 (79-211)||(48250026-48250158)
chr3 (79-175)||(21955399-21955495)
chr3 (79-211)||(36816675-36816807)
chr3 (79-178)||(6505117-6505216)
chr3 (289-439)||(3949279-3949429)
chr3 (289-439)||(8160359-8160509)
chr3 (289-439)||(30947018-30947168)
chr3 (79-225)||(46992405-46992550)
chr3 (79-219)||(78177-78317)
chr3 (79-211)||(13746882-13747014)
chr3 (310-361)||(7838219-7838270)
chr3 (79-178)||(14399356-14399455)
chr3 (79-178)||(29930171-29930270)
chr3 (79-178)||(29979325-29979424)
chr3 (80-211)||(50954045-50954176)
chr3 (154-211)||(23442363-23442420)
chr3 (289-373)||(6741489-6741573)
chr3 (79-211)||(7842174-7842306)
[»] chr4 (20 HSPs)
chr4 (79-437)||(6182224-6182579)
chr4 (244-439)||(18580657-18580852)
chr4 (289-438)||(19073034-19073183)
chr4 (244-439)||(17140124-17140319)
chr4 (312-439)||(21471348-21471475)
chr4 (289-389)||(41023958-41024058)
chr4 (280-439)||(51643854-51644011)
chr4 (289-439)||(3404347-3404497)
chr4 (289-438)||(4976293-4976442)
chr4 (289-389)||(9890608-9890708)
chr4 (312-439)||(11495168-11495295)
chr4 (89-211)||(3404560-3404682)
chr4 (289-374)||(1088158-1088243)
chr4 (79-219)||(17140349-17140489)
chr4 (79-178)||(4976559-4976658)
chr4 (79-178)||(4979112-4979211)
chr4 (312-439)||(38464180-38464307)
chr4 (338-438)||(4979360-4979460)
chr4 (79-211)||(21471561-21471693)
chr4 (289-439)||(49565839-49565989)
[»] chr2 (33 HSPs)
chr2 (253-427)||(32275563-32275736)
chr2 (79-435)||(11692977-11693336)
chr2 (275-439)||(34921130-34921294)
chr2 (312-445)||(22990233-22990366)
chr2 (289-438)||(24605466-24605615)
chr2 (289-428)||(1100459-1100598)
chr2 (289-427)||(27275737-27275875)
chr2 (289-439)||(24750191-24750341)
chr2 (289-438)||(3802940-3803089)
chr2 (289-439)||(9651728-9651878)
chr2 (289-439)||(7263568-7263718)
chr2 (289-438)||(39794507-39794656)
chr2 (79-211)||(24750426-24750558)
chr2 (289-373)||(38946365-38946449)
chr2 (244-345)||(22723789-22723887)
chr2 (335-439)||(41008381-41008485)
chr2 (312-439)||(435869-435996)
chr2 (289-439)||(5335420-5335570)
chr2 (289-439)||(10623829-10623979)
chr2 (73-211)||(27275513-27275651)
chr2 (314-439)||(45475920-45476045)
chr2 (79-211)||(436082-436214)
chr2 (83-211)||(1100247-1100375)
chr2 (323-439)||(12907868-12907984)
chr2 (79-211)||(28355063-28355195)
chr2 (289-373)||(41560614-41560698)
chr2 (154-225)||(32275455-32275526)
chr2 (79-178)||(41008139-41008238)
chr2 (79-178)||(43949441-43949540)
chr2 (79-177)||(9651996-9652094)
chr2 (396-438)||(22711663-22711705)
chr2 (289-330)||(28355279-28355320)
chr2 (289-373)||(212816-212900)
[»] chr6 (17 HSPs)
chr6 (271-438)||(2051981-2052148)
chr6 (289-439)||(31146918-31147068)
chr6 (289-439)||(13388069-13388219)
chr6 (289-439)||(35243141-35243291)
chr6 (279-439)||(28250432-28250592)
chr6 (289-438)||(7361717-7361866)
chr6 (289-438)||(7362720-7362869)
chr6 (79-178)||(18606799-18606898)
chr6 (335-439)||(26702323-26702427)
chr6 (275-345)||(24219852-24219922)
chr6 (79-213)||(24219926-24220060)
chr6 (79-178)||(7362504-7362603)
chr6 (289-439)||(1612125-1612275)
chr6 (289-373)||(18347644-18347728)
chr6 (323-439)||(18606553-18606669)
chr6 (289-359)||(29288325-29288395)
chr6 (271-320)||(23985666-23985715)
[»] chr8 (24 HSPs)
chr8 (244-389)||(22578518-22578663)
chr8 (290-445)||(22657625-22657781)
chr8 (289-439)||(20547328-20547478)
chr8 (289-439)||(35966123-35966273)
chr8 (289-439)||(45454911-45455061)
chr8 (289-438)||(43370302-43370451)
chr8 (279-439)||(39752391-39752551)
chr8 (79-438)||(4866995-4867357)
chr8 (275-437)||(7168445-7168606)
chr8 (289-373)||(1115374-1115458)
chr8 (335-439)||(43689570-43689674)
chr8 (289-439)||(2146359-2146509)
chr8 (79-178)||(43689329-43689428)
chr8 (289-439)||(7340615-7340765)
chr8 (289-439)||(30304985-30305135)
chr8 (289-439)||(32378283-32378433)
chr8 (289-439)||(32432240-32432390)
chr8 (79-211)||(2146149-2146281)
chr8 (289-373)||(8423231-8423315)
chr8 (79-211)||(35965906-35966038)
chr8 (397-438)||(14402267-14402308)
chr8 (282-359)||(14864316-14864393)
chr8 (90-211)||(20547562-20547683)
chr8 (154-211)||(39752263-39752320)
[»] scaffold0341 (2 HSPs)
scaffold0341 (289-438)||(16733-16882)
scaffold0341 (80-211)||(16518-16649)
[»] scaffold0219 (2 HSPs)
scaffold0219 (289-438)||(16234-16383)
scaffold0219 (79-178)||(16873-16972)
[»] scaffold0116 (2 HSPs)
scaffold0116 (297-439)||(11814-11956)
scaffold0116 (79-211)||(12030-12162)
[»] scaffold0340 (1 HSPs)
scaffold0340 (290-439)||(547-696)
[»] scaffold0101 (1 HSPs)
scaffold0101 (289-438)||(33346-33495)
[»] scaffold0494 (1 HSPs)
scaffold0494 (289-438)||(1418-1567)
[»] scaffold0363 (1 HSPs)
scaffold0363 (397-438)||(16545-16586)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 74 - 445
Target Start/End: Original strand, 26466429 - 26466806
Alignment:
Q  74 agcattttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgctt 173  Q
    |||| |||||||||||| || ||||||||  |||||||||||||| ||  ||||||||||||| ||||||||| ||||  |||| ||||||||||| |||    
T  26466429 agcactttgtgagcgccgctcctttcacatgctaattgcaacattggagcgatcaaattggatctttgtatcacaattgtaaattccgccttattttctt 26466528  T
Q  174 gacgatgtacccaattaaccaagtcatccctatctttccatttaacttcttcgnnnnnnn-----tagttgtgctaacttcgttggcatcaagtgggaca 268  Q
    ||||| ||  |||||||| ||| ||||| ||||||||||||||||||||||||            |||| |||  ||||||||||||||||||||||||     
T  26466529 gacgacgtgtccaattaagcaaatcatctctatctttccatttaacttcttcggggaaaaaaaattagtcgtgtcaacttcgttggcatcaagtgggacg 26466628  T
Q  269 agaccagagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaacc-ttaggtagtttgacatctccgaaattt 367  Q
    | ||| |||||||||||||||||| |||||||||| |||||| || || |||||||| ||||| | |||||| ||||   |||||||||||||| |||||    
T  26466629 acaccggagtcaacatataatgaatcttcaacatggacggaagctacaacaatatttagtttgtcttcaacctttagacggtttgacatctccggaattt 26466728  T
Q  368 tcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacaccaaact 445  Q
    |||||| ||||| ||||||| | |  | ||||| |||||||||||||||||||| ||||||||||||||||| |||||    
T  26466729 tcgacaaaaattggttttgtttctcccggatcaccatccgcgttctcaaccattactataaataaacaacacaaaact 26466806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 285 - 445
Target Start/End: Complemental strand, 27569576 - 27569416
Alignment:
Q  285 ataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttt 384  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27569576 ataatgaaacttcaacatgaatggaaactccatcaatatttggtttggtcttaaccttaggcagtttgacatctccgaaattttcgacagaaattcgttt 27569477  T
Q  385 tgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacaccaaact 445  Q
    ||||| |  ||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  27569476 tgtctctcccagatcatcatccgccttctcaaccattgctataaataaacaacacaaaact 27569416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 87 - 439
Target Start/End: Original strand, 32106808 - 32107164
Alignment:
Q  87 cgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgtaccca 186  Q
    ||||||| ||||||||||||||||||||| || |||||||||| |||||| |   ||| | ||||  |||||  ||| |||||||||||| | |||||||    
T  32106808 cgccactcctttcacacactaattgcaactttggattgatcaatttggatctacatataacaattgtaaatcttgccgtatttgcttgacaacgtaccca 32106907  T
Q  187 attaaccaagtcatccctatctttccatttaacttcttcgnnnnnnn----tagttgtgctaacttcgttggcatcaagtgggacaagaccagagtcaac 282  Q
    ||||| ||| ||||||||||||||||||||||||||||||           ||||||||  ||||| |||||||||||||||||| | ||| || |||||    
T  32106908 attaagcaactcatccctatctttccatttaacttcttcgggaaaaaaaattagttgtgtcaacttagttggcatcaagtgggacgacaccggaatcaac 32107007  T
Q  283 atataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgt 382  Q
    ||||||||||||||||||||| || ||| || ||||||||||||||||| | |||||||||||  ||||||||||||||||||| |||||| ||||  ||    
T  32107008 atataatgaagcttcaacatggactgaagcttcatcaatatttggtttgacttcaaccttaggcggtttgacatctccgaaattatcgacaaaaataggt 32107107  T
Q  383 tttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    |||||||    |  ||||||||| | || |||||||||  ||||||||| |||||||    
T  32107108 tttgtctcaaccgcatcatcatctgtgtactcaaccataactataaatatacaacac 32107164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 72 - 226
Target Start/End: Complemental strand, 27569741 - 27569583
Alignment:
Q  72 ccagcattttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgc 171  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||||||    
T  27569741 ccagcactttgtgagcgccactactttcacacactagttgcaacattagattgatcaaattgaatctttgtatcataatttaaaattcagccttatttgc 27569642  T
Q  172 ttgacgatgtacccaattaa----ccaagtcatccctatctttccatttaacttcttcg 226  Q
    || || | |||| |||||||    |||||||||||||||||||||||||||||||||||    
T  27569641 ttaacaacgtactcaattaaccaaccaagtcatccctatctttccatttaacttcttcg 27569583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 79 - 439
Target Start/End: Complemental strand, 25231205 - 25230843
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||| ||||||| |||||||||| || |||||||||| |||| |||||||||||||| ||||| | ||||  |||||| ||| ||||||||||||||    
T  25231205 tttgtgatcgccactcctttcacacaatagttgcaacattggattaatcaaattggatatatgtataacaattataaatcctgccctatttgcttgacga 25231106  T
Q  179 tgtacccaattaaccaagtcatccctatctttccatttaacttcttcgnnnnnnnt--agttgtgctaacttcgttggcatcaagtgggacaagaccaga 276  Q
     |||||| ||||| |||||||||| ||||||||||||||||||||||        |  |||||||  ||||| |||   ||||||| |||| | ||| ||    
T  25231105 cgtacccgattaagcaagtcatccatatctttccatttaacttcttcagaaaaaattaagttgtgtcaactttgttaaaatcaagttggacgacaccgga 25231006  T
Q  277 gtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaa 376  Q
    |||||||| |||||||||||||||||| | |||| |||| |||||||| |||||| |  ||||  |||   || |||||||||||||||| |||||| ||    
T  25231005 gtcaacatgtaatgaagcttcaacatggatggaagctccgtcaatattaggtttgtctacaactctagacggtgtgacatctccgaaattatcgacaaaa 25230906  T
Q  377 attcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    ||  |||||  ||      ||||||||||| |||| ||||||||  |||||||||||||||||    
T  25230905 ataagtttttccttaactggatcatcatccacgttttcaaccataactataaataaacaacac 25230843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 79 - 445
Target Start/End: Original strand, 16246909 - 16247278
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgta-tcataatttaaaatcccgccttatttgcttgacg 177  Q
    ||||||||| ||||| ||||||||||||| | ||| |||  ||||||||||| | ||| ||| || | | |||   |||| |||||||||||||||||||    
T  16246909 tttgtgagctccacttctttcacacactagtcgcaccataggattgatcaaactagatctttataataacaatagtaaattccgccttatttgcttgacg 16247008  T
Q  178 atgtacccaattaaccaagtcatccctatctttccatttaacttc-ttcgnnnnnnn---tagttgtgctaacttcgttggcatcaagtgggacaagacc 273  Q
    | |||||||||||| ||| ||||| |||||||| |||||||| || || |          ||| ||||  |||||||||||||| ||||||||  | |||    
T  16247009 acgtacccaattaagcaactcatctctatcttttcatttaacgtcattagaaaaaaaacttagctgtgtcaacttcgttggcatgaagtgggaggacacc 16247108  T
Q  274 agagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
     ||| ||||||||||||||||||||||||| | |||| ||| ||| || ||||||||||| |||||||||||  |||||||||||||| | ||||| |||    
T  16247109 ggaggcaacatataatgaagcttcaacatggatggaagctctatc-atgtttggtttggcttcaaccttaggcggtttgacatctccggatttttcaaca 16247207  T
Q  374 gaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacaccaaact 445  Q
     || ||  |||||||| || | ||| |||||||||||||||||||||| ||||||||| ||||||| |||||    
T  16247208 aaatttgattttgtctcttccggat-atcatccgcgttctcaaccattactataaatatacaacacaaaact 16247278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 19498409 - 19498604
Alignment:
Q  244 aacttcgttggcatcaagtgggacaagaccagagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaacctta 343  Q
    |||||||| ||||| ||||||||  | ||| ||||||||||||   |||||||||||||| |||||| || ||||||| |||| |||||| |||||||||    
T  19498409 aacttcgtgggcatgaagtgggaggacaccggagtcaacatatttagaagcttcaacatggacggaagctacatcaatgtttgatttggcttcaacctta 19498508  T
Q  344 ggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    ||  ||||||||||||||||| |||| ||| || || |||||| || |  | || |||| ||||| ||||| |||||| |||||| ||||||||||    
T  19498509 ggcggtttgacatctccgaaaatttctacaaaatttggttttgcctctcccggaacatcttccgcattctctaccattactataattaaacaacac 19498604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 44466268 - 44466118
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| |||||| |||| || || ||||||||    
T  44466268 tgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaatttttgacaaaattttgttttgtc 44466169  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||| |||||| |||||| ||||||||||    
T  44466168 tctcccggaacatctttcgcattctctaccattactataattaaacaacac 44466118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 50117138 - 50117288
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||| ||||| |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| || |||||||| || || ||||||||    
T  50117138 tgaagcttctacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaaatttcgacaaaattttgttttgtc 50117237  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| ||||||||||| |||||| |||||| || |||||||    
T  50117238 tctcccggaacatcttccgcgttctctaccattactataattatacaacac 50117288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 6561543 - 6561692
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||  |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| ||||||| ||| || || ||||||||    
T  6561543 tgaagcttcaacattgacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaattttcaacaaaattttgttttgtc 6561642  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| ||||||||||| |||||| |||||| || ||||||    
T  6561643 tctcccggaacatcttccgcgttctctaccattactataattatacaaca 6561692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 36075902 - 36076097
Alignment:
Q  244 aacttcgttggcatcaagtgggacaagaccagagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaacctta 343  Q
    |||||||| ||| | ||||||||| | ||| ||||||||||||  ||||||||||||||| ||| || |||||||||| |||||||  || ||| |||||    
T  36075902 aacttcgtgggcttgaagtgggacgacaccggagtcaacatattttgaagcttcaacatggacgaaagctccatcaatgtttggttccgcttcatcctta 36076001  T
Q  344 ggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    ||  |||||||||||||| || |||||||| || || ||| ||||| |  |  | |||| | ||||||||| |||||| |||||| ||||||||||    
T  36076002 ggcggtttgacatctccggaaatttcgacaaaatttggttctgtctctcccgtaacatctttcgcgttctctaccattactataattaaacaacac 36076097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 23914519 - 23914385
Alignment:
Q  305 acggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcat 404  Q
    |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| ||||||||||| || || ||||||||| |  | || |||| |    
T  23914519 acggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaattttcgacaaaattttgttttgtctctcccggaacatctt 23914420  T
Q  405 ccgcgttctcaaccattgctataaataaacaacac 439  Q
     ||||||||| |||||| |||||| ||||||||||    
T  23914419 tcgcgttctctaccattactataattaaacaacac 23914385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 29356063 - 29356213
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || || ||||||||    
T  29356063 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttgttttgtc 29356162  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||| |||||| |||||| ||||||||||    
T  29356163 tctcccggaacatctttcgcattctctaccattactataattaaacaacac 29356213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 373
Target Start/End: Original strand, 21943738 - 21943821
Alignment:
Q  290 gaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    ||||| |||||||| || ||| |||||||||| ||||||||||| |||||||||||  ||||||||||||||||| ||||||||    
T  21943738 gaagcgtcaacatggacagaagctccatcaatgtttggtttggcttcaaccttaggcggtttgacatctccgaaaatttcgaca 21943821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 41454520 - 41454370
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||| ||| || ||||| |||||  |||||||||||||| ||| ||||||| || || ||||||||    
T  41454520 tgaagcttcaacatggacggaagctccatcaatgtttgttttcgcttcaacattaggcggtttgacatctccggaatattcgacaaaattttgttttgtc 41454421  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | | | ||||| |||||| |||||| ||||||||||    
T  41454420 tctcccggaacatctttcacattctctaccattactataattaaacaacac 41454370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 37015599 - 37015515
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    ||||||||||||||| ||||||  ||||||||| |||||||| || |||||||||||  |||||||||||||| || ||||||||    
T  37015599 tgaagcttcaacatggacggaagttccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaaatttcgaca 37015515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 5078621 - 5078471
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  5078621 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttattttgtc 5078522  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | |  |||| | ||| ||||| |||||| |||||| ||||||||||    
T  5078521 tctcccgggacatctttcgcattctctaccattactataattaaacaacac 5078471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 438
Target Start/End: Complemental strand, 13630103 - 13629954
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||  ||||||||||| || || ||||||||    
T  13630103 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccagaattttcgacaaaattttgttttgtc 13630004  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| | ||| ||||| |||||| |||||| || ||||||    
T  13630003 tctcccggaacatctttcgcattctctaccattactataattatacaaca 13629954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 50116921 - 50117053
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | |||||| ||||||||||  | ||||||||| | | ||||  |||||||||||||||||||||||||    
T  50116921 tttgtgagctccactcctttcacacactaggcggaacattggattgatcaagcttgatatttgtgtaacaattgtaaatcccgccttatttgcttgacga 50117020  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     | ||| | | || ||| ||||| |||||||||    
T  50117021 cgcacctactcaagcaattcatctctatctttc 50117053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 439
Target Start/End: Original strand, 7980590 - 7980717
Alignment:
Q  312 ctccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgtt 411  Q
    |||||| ||| |||||||| || |||||||||||  |||||||||||||  ||  ||||||| || || ||||||||| |  |||| |||| ||||| ||    
T  7980590 ctccattaatgtttggtttcgcttcaaccttaggcggtttgacatctccagaaaattcgacaaaatttggttttgtctctcccagaacatcttccgcatt 7980689  T
Q  412 ctcaaccattgctataaataaacaacac 439  Q
    ||| |||||| |||||| ||||||||||    
T  7980690 ctctaccattactataattaaacaacac 7980717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 361
Target Start/End: Original strand, 38692301 - 38692383
Alignment:
Q  279 caacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccg 361  Q
    ||||||||  ||||||||||||||| ||| || |||||||||| |||| ||| || |||||||||||  ||||||||||||||    
T  38692301 caacatattttgaagcttcaacatggacgaaagctccatcaatgtttgattttgcttcaaccttagggggtttgacatctccg 38692383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 44620479 - 44620579
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||  |||||| ||||||| || |||| ||| || ||||| |||||  |||| ||||||||| ||||||||||| || || ||||||||    
T  44620479 tgaagcttcaacattgacggaagctccatctatgtttgttttcgcttcaacattaggcggtttaacatctccggaattttcgacaaaattttgttttgtc 44620578  T
Q  389 t 389  Q
    |    
T  44620579 t 44620579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 12649740 - 12649839
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| ||| ||||  |||||||||||||||||||||||||    
T  12649740 tttgtgagttccactcctttcacacactagccggaacattggattgatcaagcttgatctttgtgtcacaattgtaaatcccgccttatttgcttgacga 12649839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 38775489 - 38775639
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  38775489 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 38775588  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  38775589 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 38775639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 3983798 - 3983713
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctcc-gaaattttcgaca 373  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||| ||||||||||||| |||||||||||||    
T  3983798 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggtggtttgacatctccggaaattttcgaca 3983713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 3947837 - 3947921
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| |||||||||||    
T  3947837 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgaca 3947921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 38692099 - 38692231
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| | ||| |||||||||||||   |||||||| ||||||||||  | ||| ||||| | | ||||  |||||||| ||||||||||||||||    
T  38692099 tttgtgagctctactcctttcacacactaggcgcaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgtcttatttgcttgacga 38692198  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     || |||| | || ||| || || |||||||||    
T  38692199 cgtgcccactcaagcaattcttctctatctttc 38692231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 87 - 439
Target Start/End: Original strand, 13158187 - 13158542
Alignment:
Q  87 cgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgtaccca 186  Q
    ||||||| |||||| | |||||||| ||||||  |||||||||||||||| | ||||| | ||||  ||||||| || || |||||| |||| |||| ||    
T  13158187 cgccactcctttcatatactaattgtaacattgaattgatcaaattggatctatgtataacaattgtaaatcccaccctacttgcttaacgacgtactca 13158286  T
Q  187 attaaccaagtcatccctatctttccatttaacttcttcgnnnnnnnta---gttgtgctaacttcgttggcatcaagtgggacaagaccagagtcaaca 283  Q
    |||||  || ||||||||||||||||||||||||||||||        |   |  |||  ||||||||||||||||||||| || | |||||||||||||    
T  13158287 attaagaaaatcatccctatctttccatttaacttcttcgaaaaaacaatgagccgtgtcaacttcgttggcatcaagtggaacgacaccagagtcaaca 13158386  T
Q  284 tataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgtt 383  Q
    ||| |||||||||||||||  |||||||||||||||||||||||||| || ||||| |||||  |||||||||||||||||||||||||| ||| | |||    
T  13158387 tatgatgaagcttcaacattgacggaaactccatcaatatttggtttagcttcaactttaggcggtttgacatctccgaaattttcgacaaaaaatagtt 13158486  T
Q  384 ttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    |||||| |    |||||||||||||||||||||||||  |||| ||||||||||||    
T  13158487 ttgtctctcctggatcatcatccgcgttctcaaccataactatgaataaacaacac 13158542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 83 - 445
Target Start/End: Complemental strand, 20285900 - 20285536
Alignment:
Q  83 tgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgta 182  Q
    ||||| ||||| |||||||| |||| || || |||| ||||||||||| ||||| ||||||||| || |  ||||||||||| ||||||||| ||| ||     
T  20285900 tgagctccactcctttcacatactagtttcaccattggattgatcaaactggatctttgtatcacaaatgtaaatcccgcctgatttgcttggcgacgtg 20285801  T
Q  183 cccaattaaccaagtcatccctatctttccatttaacttcttcg---nnnnnnntagttgtgctaacttcgttggcatcaagtgggacaagaccagagtc 279  Q
    ||||||||| ||||| ||| |||||||||| |||||||||||||          ||||| ||  || ||||||||||||||||||||| | ||  |||||    
T  20285800 cccaattaagcaagttatcactatctttccctttaacttcttcgggaaaaaacatagttttgtcaaattcgttggcatcaagtgggacgacactggagtc 20285701  T
Q  280 aacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaatt 379  Q
    |||||||||||||||||||||||| ||  || |||||||||||||||||||||| |||||| ||    || | |||||||| | |||||||||| || ||    
T  20285700 aacatataatgaagcttcaacatgtacaaaagctccatcaatatttggtttggcttcaaccctaatcggtatcacatctccaacattttcgacaaaattt 20285601  T
Q  380 cgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacaccaaact 445  Q
     |||| ||||  | | ||||||||   | ||||||||| ||| ||||||||| ||||||| |||||    
T  20285600 ggtttggtct-ctcctgatcatcaattgtgttctcaactattactataaatatacaacacaaaact 20285536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 95 - 445
Target Start/End: Complemental strand, 43178744 - 43178391
Alignment:
Q  95 ctttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgtacccaattaacca 194  Q
    ||||||||||||| ||| | |||| ||||||||||| | ||| ||||||| | ||||  ||||| |||||||||| ||||||||||||||||||||| ||    
T  43178744 ctttcacacactagttgtaccattggattgatcaaacttgatctttgtataacaattgtaaatctcgccttattttcttgacgatgtacccaattaagca 43178645  T
Q  195 agtcatccctatctttccatttaacttcttcg---nnnnnnntagttgtgctaacttcgttggcatcaagtgggacaagaccagagtcaacatataatga 291  Q
    ||||||||||||||||||||||||| || | |          |||   ||  |||||| ||||||| | ||||||  | |||| ||||||||||||||||    
T  43178644 agtcatccctatctttccatttaacgtcgttggaaaaaaacctagccatgtcaacttcattggcatgaggtgggaggacaccaaagtcaacatataatga 43178545  T
Q  292 agcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctat 391  Q
    |||||||||||| |||||| |||||| |||  |||||||||| ||||| || ||  |||||||||||||| | |||| |||  || || ||||||||| |    
T  43178544 agcttcaacatggacggaagctccattaatgcttggtttggcttcaacatttggctgtttgacatctccggattttttgactaaatttagttttgtctct 43178445  T
Q  392 ttcagatcatcatccgcgttctcaaccattgctataaataaacaacaccaaact 445  Q
        ||||||| |||| ||||||||||||| |||||| |||| ||||| |||||    
T  43178444 cctggatcatcttccgtgttctcaaccatttctataattaaaaaacacaaaact 43178391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 165 - 345
Target Start/End: Original strand, 23028693 - 23028877
Alignment:
Q  165 tatttgcttgacgatgtacccaattaaccaagtcatccctatctttccatttaacttcttc--gnnnnnnnt--agttgtgctaacttcgttggcatcaa 260  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||  |       |  ||| |||  ||||| |||||||||||    
T  23028693 tatttgcttgacgatgtacccaattaagcaagtcatctctatctttccatttaacttcttcaagaaaaaaattgagtcgtgtcaactttgttggcatcaa 23028792  T
Q  261 gtgggacaagaccagagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttagg 345  Q
     |||||| | ||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||||||||||    
T  23028793 atgggacgacaccggagtcaacatataatgaagcttcaatatggacggaagctccatcaatatttggtttggcttcaaccttagg 23028877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 1035926 - 1036076
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||  |||||||||||||| ||||||||||| || || ||||||||    
T  1035926 tgaagcttcaacatggacggaaactccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaattttcgacaaaattttgttttgtc 1036025  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | || | || |||| |  |||||||| |||||| |||||| ||||||||||    
T  1036026 tcttccggaacatcttttgcgttctctaccattactataattaaacaacac 1036076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 279 - 439
Target Start/End: Original strand, 13567467 - 13567627
Alignment:
Q  279 caacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaat 378  Q
    ||||||| | ||||||||||||||| |||||| |||||||||| |||||||| || ||||| |||||  |||||||||||||| ||||||||||| || |    
T  13567467 caacatacattgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaatt 13567566  T
Q  379 tcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |||||||||||  |||| |||| | ||| ||||| |||||| |||||| ||||||||||    
T  13567567 ttgttttgtctatcccagaacatctttcgcattctctaccattactataattaaacaacac 13567627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 34123303 - 34123453
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||| ||| || |||||||||||| |||||||||||||| || |||||||| ||  | ||||||||    
T  34123303 tgaagcttcaacatggacggaagctccatcaatgtttgatttagcttcaaccttaggtggtttgacatctccggaaatttcgacaaaatattgttttgtc 34123402  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  |||| |||| ||||||||||| |||||| |||||| ||||||||||    
T  34123403 tctcccagaacatcttccgcgttctctaccattactataattaaacaacac 34123453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 27867221 - 27867371
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| ||||||||||| || || ||||||||    
T  27867221 tgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaattttcgacaaaattttgttttgtc 27867320  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||| |||||| |||||| ||||||||||    
T  27867321 tctcccggaacatctttcgcattctctaccattactataattaaacaacac 27867371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 7800384 - 7800533
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||| ||| || |||||||| || |||||||||||  |||||||||||||||||  ||||||| || || ||||||||    
T  7800384 tgaagcttcaacatggacggaagctctatcgatgtttggtttcgcttcaaccttaggcggtttgacatctccgaaaaattcgacaaaatttggttttgtc 7800483  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  |  | |||| ||||||||||||||||||||||||| |||||||||    
T  7800484 tctcccgaaacatcttccgcgttctcaaccattgctataattaaacaaca 7800533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 279 - 439
Target Start/End: Original strand, 18537697 - 18537857
Alignment:
Q  279 caacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaat 378  Q
    ||||||||  ||||||||||||||| |||||| |||||| ||| |||||||| || |||||||||||  |||||||||||||| || |||||||| || |    
T  18537697 caacatattttgaagcttcaacatggacggaagctccattaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaaatttcgacaaaatt 18537796  T
Q  379 tcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | ||||| ||| |  | || |||| ||||||||||| |||||| |||||| ||||||||||    
T  18537797 tggttttatctctcccggaacatcttccgcgttctctaccattactataattaaacaacac 18537857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 25896475 - 25896625
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||||||| || ||||| |||||  |||||||||||||| ||||||||||| || || ||||| ||    
T  25896475 tgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaactttaggcggtttgacatctccggaattttcgacaaaattttgttttctc 25896574  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||  | ||||||||| |||||| |||||| ||||||||||    
T  25896575 tctcccggaacatttttcgcgttctctaccattactataattaaacaacac 25896625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 7021253 - 7021403
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||| ||| || ||||| |||||  |||||||||||||  ||||||||||| || || ||||||||    
T  7021253 tgaagcttcaacatggacggaagctccatcaatgtttgttttcgcttcaacattaggcggtttgacatctccagaattttcgacaaaattttgttttgtc 7021352  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||| |||||| |||||| ||||||||||    
T  7021353 tctcccggaacatctttcgcattctctaccattactataattaaacaacac 7021403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 309 - 439
Target Start/End: Original strand, 30353899 - 30354029
Alignment:
Q  309 aaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgc 408  Q
    ||||||||||||| ||||||||||| |||||||||||  |||| |||||||||||| |||||||| || || ||||||||| |  | || |||| ||||     
T  30353899 aaactccatcaatgtttggtttggcttcaaccttaggcggtttcacatctccgaaaatttcgacaaaatttggttttgtctctcccggaacatcttccgt 30353998  T
Q  409 gttctcaaccattgctataaataaacaacac 439  Q
    |||||| |||||| |||| | ||||||||||    
T  30353999 gttctctaccattactattattaaacaacac 30354029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 439
Target Start/End: Original strand, 24050937 - 24051100
Alignment:
Q  276 agtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacaga 375  Q
    |||||||||||  ||||||||||| ||| |||||| |||||||||| |||||||| || ||||||||| |  |||||||||||||| || |||||||| |    
T  24050937 agtcaacatattttgaagcttcaaaatggacggaagctccatcaatgtttggtttcgcttcaaccttatgcggtttgacatctccggaaatttcgacaaa 24051036  T
Q  376 aattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | ||  |||||||| |  |  | |||| ||||| || || |||||| |||||| ||||||||||    
T  24051037 atttgcttttgtctctcccgaaacatcttccgcattatctaccattactataattaaacaacac 24051100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 34078465 - 34078315
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    |||| |||||||||| |||||| |||||||||| |||||||| || |||||||||||  ||||||||||| |  ||||||||| | || || ||||||||    
T  34078465 tgaaacttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatcttcagaattttcgataaaattttgttttgtc 34078366  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  |||| |||| | | | ||||| |||||| |||||| ||||||||||    
T  34078365 tctcccagaacatctttcacattctctaccattcctataattaaacaacac 34078315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 11032827 - 11032976
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || || ||||||||    
T  11032827 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttgttttgtc 11032926  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| | ||| ||||| |||||| |||||| || ||||||    
T  11032927 tctcccggaacatctttcgcattctctaccattactataattatacaaca 11032976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 4203098 - 4203230
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | ||||||||||||||||| || ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  4203098 tttgtgagctccactcctttcacacactaggcggaacattagattgatcaagtttgatctttgtgtaacaattataaatcccgccttatttgcttgacga 4203197  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     || |||| | || ||| || || |||||||||    
T  4203198 cgtgcccactcaagcaattcttctctatctttc 4203230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 445
Target Start/End: Complemental strand, 21999748 - 21999593
Alignment:
Q  290 gaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattc-gttttgtc 388  Q
    |||||||||||||| ||||||  || || ||| ||||||||||| |||||||||||  |||||||||||||  | ||||||||| |||||| |||||| |    
T  21999748 gaagcttcaacatggacggaaggtctatgaatgtttggtttggcttcaaccttaggcggtttgacatctccagatttttcgaca-aaattcggttttgcc 21999650  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacaccaaact 445  Q
    | |  | ||||||| |||  ||||||||||||| |||||| |||||| ||| |||||    
T  21999649 tctcccggatcatcttccatgttctcaaccatttctataattaaacatcacaaaact 21999593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 33993931 - 33993804
Alignment:
Q  312 ctccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgtt 411  Q
    |||||| ||| |||||||| || |||||||||||| |||||||||||||| ||  ||||||| || || ||||||||| |  | || |||| || | |||    
T  33993931 ctccattaatgtttggtttcgcttcaaccttaggtggtttgacatctccggaaaattcgacaaaatttggttttgtctttgccggaacatcttctgtgtt 33993832  T
Q  412 ctcaaccattgctataaataaacaacac 439  Q
    ||| ||||||||||||| ||||||||||    
T  33993831 ctctaccattgctataattaaacaacac 33993804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 38859565 - 38859665
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| | |||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || || ||||||||    
T  38859565 tgaagcttcaacatggatggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttgttttgtc 38859664  T
Q  389 t 389  Q
    |    
T  38859665 t 38859665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 31098310 - 31098460
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||| ||||||||| | |||| ||||| |||| |||||||| || |||||||||||  |||| ||||||||| || |||||||| || || ||||||||    
T  31098310 tgaagtttcaacatggatggaagctccaccaatgtttggtttcgcttcaaccttaggcggtttcacatctccggaaatttcgacaaaatttggttttgtc 31098409  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||  |||| |||||| |||||| |||||| |||| |||||    
T  31098410 tctcccggaacattttccgtgttctctaccattactataattaaaaaacac 31098460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 37820254 - 37820404
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||| ||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  37820254 tgaagcttcaacatggacggaagctctatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 37820353  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||| || ||| |||||| ||||||||||    
T  37820354 tctcccggaacatctttcgcattctctactattactataattaaacaacac 37820404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 1035710 - 1035850
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||| ||    
T  1035710 tttgtgagttccactcctttcacacactagccggaacattggattgatcaagcttgatctttgtgtgacaattgtaaatcccgccttatttgcttgatga 1035809  T
Q  179 tgtacccaattaaccaagtcatccctatctttccatttaac 219  Q
     | ||||| | || ||| ||||| ||||||||| |||||||    
T  1035810 cgcacccactcaagcaattcatctctatctttcgatttaac 1035850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 18537494 - 18537626
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| |||||  ||||||||||||  || |||||| ||||||||||  | ||| ||||| | | ||||  ||||||||||||||||||||||| |    
T  18537494 tttgtgagctccactcgtttcacacactaggtggaacattggattgatcaagcttgatctttgtgtaacaattgcaaatcccgccttatttgcttgacaa 18537593  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     || |||| | || ||| || ||||||||||||    
T  18537594 cgtgcccactcaagcaattcttccctatctttc 18537626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 31098087 - 31098191
Alignment:
Q  72 ccagcattttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgc 171  Q
    |||||| ||||||||| ||||| |||||||||||||   | |||||| ||||||||||| | ||| ||||| | | ||||   |||||||||||||||||    
T  31098087 ccagcactttgtgagctccactcctttcacacactaggcggaacattggattgatcaaacttgatctttgtgtaacaattgtcaatcccgccttatttgc 31098186  T
Q  172 ttgac 176  Q
    |||||    
T  31098187 ttgac 31098191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 28885783 - 28885933
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| ||| || ||||||| || |||| ||| || ||||| |||||  |||||||||||||| |||||| |||| || ||  |||||||    
T  28885783 tgaagcttcaacatggacgaaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaatttttgacaaaattttcttttgtc 28885882  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||| |||||| |||||  ||||||||||    
T  28885883 tctcccggaacatctttcgcattctctaccattactatatttaaacaacac 28885933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 34078672 - 34078550
Alignment:
Q  89 ccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgtacccaat 188  Q
    ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  ||||||||||||||||||||||||| | ||||| |    
T  34078672 ccactcctttcacacactagccggaacattggattgatcaagcttgatctttgtgtgacaattgtaaatcccgccttatttgcttgacgacgcacccact 34078573  T
Q  189 taaccaagtcatccctatctttc 211  Q
     || ||| ||||| |||||||||    
T  34078572 caagcaattcatctctatctttc 34078550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 7800168 - 7800267
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||| ||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  7800168 tttgtgagctccactcctttcacacattaggcggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 7800267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 11032621 - 11032743
Alignment:
Q  89 ccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgtacccaat 188  Q
    ||||| ||||||||||||| | | |||||| ||||||||||  | ||| ||||| | | ||||  ||||||||||||||||||||| ||| | ||||| |    
T  11032621 ccactcctttcacacactagtcggaacattggattgatcaagcttgatctttgtgtgacaattgtaaatcccgccttatttgcttgtcgacgcacccact 11032720  T
Q  189 taaccaagtcatccctatctttc 211  Q
     || ||| ||||| |||| ||||    
T  11032721 caagcaattcatctctatttttc 11032743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 37820048 - 37820170
Alignment:
Q  89 ccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgtacccaat 188  Q
    ||||| |||| |||||||||  | |||||| ||||||||||  | ||| ||||| | | ||||| ||||||||||||||||||||| ||| | ||||| |    
T  37820048 ccactccttttacacactaaccggaacattggattgatcaagcttgatctttgtgtgacaattttaaatcccgccttatttgcttgtcgacgcacccact 37820147  T
Q  189 taaccaagtcatccctatctttc 211  Q
     || ||| ||||| |||| ||||    
T  37820148 caagcaattcatctctatttttc 37820170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 13567261 - 13567393
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  ||||||||||||||||||||| |||    
T  13567261 tttgtgagttccactcctttcacacactagccggaacattggattgatcaagcttgatctttgtgtgacaattgtaaatcccgccttatttgcttgtcga 13567360  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     | ||||| | || ||| ||||| |||| ||||    
T  13567361 cgcacccactcaagcaattcatctctatttttc 13567393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 439
Target Start/End: Original strand, 23030144 - 23030232
Alignment:
Q  351 tgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    ||||||||| |||||| |||||| ||||  |||||||||    |||||||||||| | ||| ||| ||||  |||||||||||||||||    
T  23030144 tgacatctctgaaattatcgacaaaaataggttttgtctcaaccagatcatcatctgtgttttcagccataactataaataaacaacac 23030232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 27867005 - 27867137
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||||||||| | | ||||  |||||||| | ||||||||||||||    
T  27867005 tttgtgagttccactcctttcacacactagccggaacattggattgatcaagcttgatatttgtgttacaattgtaaatcccgtcatatttgcttgacga 27867104  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     | ||||| | || ||| ||||| | |||||||    
T  27867105 cgcacccactcaagcaattcatctccatctttc 27867137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 79 - 445
Target Start/End: Complemental strand, 21799900 - 21799532
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| ||||||||||||| | | |  ||| ||||||||||||| ||| ||||| | | ||||  |||| | ||||||||| ||||||||    
T  21799900 tttgtgagctccactcctttcacacactagtcgtactattggattgatcaaatttgatctttgtgtaacaattgtaaattctgccttattttcttgacga 21799801  T
Q  179 tgtacccaattaaccaagtcatccctatctttccatttaacttcttcgnnnnnnn--tagttgtgctaacttcgttggcatcaagtgggacaagaccaga 276  Q
    ||||||||||||| |||||||||||||||||| |||||||| || |||         |||  |||  |||||||||||||| ||||||||  | ||| ||    
T  21799800 tgtacccaattaagcaagtcatccctatcttttcatttaacgtcgtcgggaaaaacctagccgtgtcaacttcgttggcatgaagtgggaggataccgga 21799701  T
Q  277 gtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaa 376  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | || ||||||||  |||||||||||||  | ||||||||| ||    
T  21799700 gtcaacatataatgaagcttcaacatggacggaagctccatcaatatttggtttgacttctaccttaggatgtttgacatctccagatttttcgacaaaa 21799601  T
Q  377 attcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacaccaaact 445  Q
     ||  |||||||| |  |||| |||| |||||||||||||||||| |||||| |||||||||| |||||    
T  21799600 tttgattttgtctctcccagaccatcttccgcgttctcaaccattactataattaaacaacacaaaact 21799532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 387
Target Start/End: Original strand, 43827767 - 43828072
Alignment:
Q  83 tgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgta 182  Q
    ||||| ||||| ||||||||||||| | |||||| ||||||||||||| | ||| ||||| | | ||||  |||||||||||||| |||||||||| ||     
T  43827767 tgagctccactcctttcacacactagtcgcaacaatagattgatcaaacttgatctttgtctaacaattgtaaatcccgccttatctgcttgacgacgtg 43827866  T
Q  183 cccaattaaccaagtcatccctatctttccatttaacttcttc-gnnnnnnntagttgtgctaacttcgttggcatcaagtgggacaagaccagagtcaa 281  Q
    | || | || ||| || || ||||||||||| ||||| || |  |       |||  |||  |||||||| ||||| ||||||||  | ||| ||||| |    
T  43827867 ctcactcaagcaaatcttctctatctttccacttaacgtcgtatgaaaaaactagccgtgtcaacttcgtcggcatgaagtgggaggacaccggagtcga 43827966  T
Q  282 catataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcg 381  Q
    |||||   |||||||||||||| |||||| |||||||||| ||||||||| | ||| |||||||  ||||||||||||||||| |||||||| || || |    
T  43827967 catatttagaagcttcaacatggacggaagctccatcaatgtttggtttgacttcagccttaggcggtttgacatctccgaaaatttcgacaaaatttgg 43828066  T
Q  382 ttttgt 387  Q
    ||||||    
T  43828067 ttttgt 43828072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 439
Target Start/End: Original strand, 19046634 - 19046794
Alignment:
Q  279 caacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaat 378  Q
    ||||||||  ||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||  |||||||||||| | ||  ||||||| || |    
T  19046634 caacatattttgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctctggaaaattcgacaaaatt 19046733  T
Q  379 tcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | ||||||||| |     | |||| ||||||||||| |||||| |||||| ||||||||||    
T  19046734 tggttttgtctctcgtgtaacatcttccgcgttctctaccattactataattaaacaacac 19046794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 445
Target Start/End: Complemental strand, 8400490 - 8400123
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||  ||||| ||||||||||||| | |||||||| ||||| |  |  | ||| ||||||| | ||||  ||||||||| ||||||| |||||||    
T  8400490 tttgtgagttccactcctttcacacactagtcgcaacattggattggttgagcttgatctttgtataacaattgtaaatcccgctttatttgtttgacga 8400391  T
Q  179 tgtacccaattaaccaagtcatccctatctttccatttaacttcttcgnnnnnnn---tagttgtgctaacttcgttggcatcaagtgggacaagaccag 275  Q
     || |||| |||| |||||| || |||||||| |||||||| || ||           |||  |||  |||||| | ||||| ||||||||  | ||| |    
T  8400390 cgtgcccacttaagcaagtcttctctatcttttcatttaacgtcgtccgaaaaaaacctagccgtgtcaacttcatgggcatgaagtgggaggacaccgg 8400291  T
Q  276 agtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacaga 375  Q
    |||||||||||   |||||||||||||| || ||| ||||||| || ||||||||||| |||||||||||  |||||||||||||  | |||||||||      
T  8400290 agtcaacatatttagaagcttcaacatggaccgaagctccatcgatgtttggtttggcttcaaccttagg--gtttgacatctccatatttttcgacaat 8400193  T
Q  376 aattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacaccaaact 445  Q
    | || ||||||||| |  | ||||||| ||| |||| ||| ||||| ||| || ||||||| || |||||    
T  8400192 atttggttttgtctctcccggatcatcttccacgttgtcatccattactaaaattaaacaagacaaaact 8400123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 42500094 - 42499944
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || || ||||||||    
T  42500094 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttgttttgtc 42499995  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | |  |||| | ||| ||||| |||||| |||||| ||||||||||    
T  42499994 tctcccgggacatctttcgcattctctaccattactataattaaacaacac 42499944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 389
Target Start/End: Complemental strand, 15060300 - 15060200
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || || ||||||||    
T  15060300 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttgttttgtc 15060201  T
Q  389 t 389  Q
    |    
T  15060200 t 15060200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 373
Target Start/End: Original strand, 618115 - 618209
Alignment:
Q  279 caacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    ||||||||  ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| |||||||||||    
T  618115 caacatattttgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgaca 618209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 18106073 - 18105923
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||  ||||||||||| || || ||||||||    
T  18106073 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccagaattttcgacaaaattttgttttgtc 18105974  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || | || | ||| ||||| |||||| |||||| ||||||||||    
T  18105973 tctcccggaacttctttcgcattctctaccattactataattaaacaacac 18105923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 439
Target Start/End: Complemental strand, 36186368 - 36186224
Alignment:
Q  294 cttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctattt 393  Q
    |||||||||| |||||| |||||||||| |||||||| |  ||||||||||   ||||||||||||| ||| ||| |||| || || ||||||||| |      
T  36186368 cttcaacatggacggaagctccatcaatgtttggtttcggttcaaccttagacggtttgacatctccaaaaattt-gacaaaatttagttttgtctctcc 36186270  T
Q  394 cagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    |||| |||| |||  |||||| |||||| |||||| ||||||||||    
T  36186269 cagaacatcttccatgttctctaccattactataattaaacaacac 36186224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 47061783 - 47061651
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  47061783 tttgtgagctccactcctttcacacactaggcggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 47061684  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     || |||| | || ||| || || |||||||||    
T  47061683 cgtgcccactcaagcaattcttctctatctttc 47061651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 30787224 - 30787074
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  30787224 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 30787125  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  30787124 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 30787074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 43623510 - 43623660
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  43623510 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 43623609  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  43623610 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 43623660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 45764064 - 45763914
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  45764064 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 45763965  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  45763964 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 45763914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 47061565 - 47061438
Alignment:
Q  312 ctccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgtt 411  Q
    |||||| ||| |||||||| || | |||||||||  |||||||||||||| ||  ||| ||| || || ||||||||| |  | || |||| ||| ||||    
T  47061565 ctccattaatgtttggtttcgcttaaaccttaggcggtttgacatctccggaaaattcaacaaaatttggttttgtctctccctgaacatcttccacgtt 47061466  T
Q  412 ctcaaccattgctataaataaacaacac 439  Q
    ||| |||||| |||||| ||||||||||    
T  47061465 ctctaccattactataattaaacaacac 47061438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 438
Target Start/End: Complemental strand, 3761477 - 3761435
Alignment:
Q  396 gatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    ||||||||||||| |||||||||||  ||||||||||||||||    
T  3761477 gatcatcatccgcattctcaaccataactataaataaacaaca 3761435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 18106278 - 18106156
Alignment:
Q  89 ccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgtacccaat 188  Q
    ||||| |||||||||||||   | |||||| ||||||||||| | ||| ||||| | | ||||  ||||||||||||||||||||| ||| | ||||| |    
T  18106278 ccactcctttcacacactagccggaacattggattgatcaaacttgatctttgtgtgacaattgtaaatcccgccttatttgcttgtcgacgcacccact 18106179  T
Q  189 taaccaagtcatccctatctttc 211  Q
     || ||| ||||| |||| ||||    
T  18106178 caagcaattcatctctatttttc 18106156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 79 - 439
Target Start/End: Complemental strand, 33399437 - 33399074
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||| | ||||| ||||||||||| |||| ||| ||| ||||||||||||||||| || |||| | |||| ||||| |  || |||||| |||||||    
T  33399437 tttgtgatcaccacttctttcacacacaaatttcaatattggattgatcaaattggatcttcgtataacaattgaaaattcttccctatttgtttgacga 33399338  T
Q  179 tgtacccaattaaccaagtcatccctatctttccatttaacttcttcgnnnnnnnt--agttgtgctaacttcgttggcatcaagtgggacaagaccaga 276  Q
     ||| |||||||| ||| |||||| |||||||||||||||||||||||          ||  |||  ||||||||||||||||||||| || | ||| ||    
T  33399337 cgtatccaattaagcaactcatccatatctttccatttaacttcttcgggaaaaaatgagccgtgtcaacttcgttggcatcaagtggaacgacaccgga 33399238  T
Q  277 gtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaa-ccttaggtagtttgacatctccgaaattttcgacaga 375  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||  |||| ||||||    |||||||||||||||||||| |||| |    
T  33399237 gtcaacatataatgaagcttcaacatggacggaagctccatcaatatttggtttggtttcaacccttagacgatttgacatctccgaaatttttgacaaa 33399138  T
Q  376 aattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    |||| |||||||||    | || ||| ||||| ||||||||| ||  |||||||||||||||||    
T  33399137 aattggttttgtctcacccggaacataatccgtgttctcaactataactataaataaacaacac 33399074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 6505333 - 6505482
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    |||||||||||||||||||||| |||||||||| |||||||| || |||||||||||  ||||||||||||||||| |||| ||| || || ||||||||    
T  6505333 tgaagcttcaacatgaacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccgaaaatttcaacaaaatttggttttgtc 6505432  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  |||| |||| ||||||||||| |||||| |||||| |||||||||    
T  6505433 tctcccagaacatcttccgcgttctctaccattactataattaaacaaca 6505482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 14399241 - 14399091
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| | |||| |||||||||| |||||||| || |||||||||||  ||||||||||||||||| |||||||| || || ||||||||    
T  14399241 tgaagcttcaacatggaaggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccgaaaatttcgacaaaattttgttttgtc 14399142  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| ||||||||||| |||||| |||||| ||||||||||    
T  14399141 tctcccggaacatcttccgcgttctctaccattactataattaaacaacac 14399091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 11389364 - 11389514
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| ||| || |||||||||| |||||||| || |||||||||||  |||||||||||||| || |||||||| || || ||||||||    
T  11389364 tgaagcttcaacatggacgaaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaaatttcgacaaaattttgttttgtc 11389463  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| ||||||||||| |||||| ||| || || |||||||    
T  11389464 tctcccggaacatcttccgcgttctctaccattactacaattatacaacac 11389514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 21955614 - 21955764
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| ||  || |||| || |||||||||||  ||||||||||||||||| ||| |||| || || ||||||||    
T  21955614 tgaagcttcaacatggacggaagctccatcgatgattagtttcgcttcaaccttaggcggtttgacatctccgaaaattttgacaaaacttggttttgtc 21955713  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| ||||||||||| |||||| |||||| ||||||||||    
T  21955714 tctcccggaacatcttccgcgttctctaccattactataattaaacaacac 21955764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 46992622 - 46992772
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| || |||||||| || || ||||||||    
T  46992622 tgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaaatttcgacaaaattttgttttgtc 46992721  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  |  | |||| ||||| ||||| |||||| |||||| || |||||||    
T  46992722 tctcccgaaacatcttccgcattctctaccattactataattatacaacac 46992772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 389
Target Start/End: Original strand, 48250230 - 48250342
Alignment:
Q  277 gtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaa 376  Q
    ||||||||| | ||||||||||||||| |||||| |||||||||| ||||||||  | |||||||||||  |||||||||||||| || |||||||| ||    
T  48250230 gtcaacatacattgaagcttcaacatggacggaagctccatcaatgtttggtttcacttcaaccttaggcggtttgacatctccggaaatttcgacaaaa 48250329  T
Q  377 attcgttttgtct 389  Q
     || |||||||||    
T  48250330 ttttgttttgtct 48250342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 13747098 - 13747248
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||| ||||||||| |||||| |||||||||| |||||||| || ||||| |||||  |||||||||||||| ||||||||| | || || ||||||||    
T  13747098 tgaagtttcaacatggacggaagctccatcaatgtttggtttcgcttcaacattaggcggtttgacatctccggaattttcgagaaaattttgttttgtc 13747197  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||| |||||| |||||| ||||||||||    
T  13747198 tctcccggaacatctttcgcattctctaccattactataattaaacaacac 13747248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 36816891 - 36817041
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| |||||| |||| || || ||||| ||    
T  36816891 tgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaattttagacaaaattttgttttatc 36816990  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||  | ||| ||||| |||||| |||||| ||||||||||    
T  36816991 tctcccggaacatatttcgcattctctaccattactataattaaacaacac 36817041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 438
Target Start/End: Complemental strand, 50953961 - 50953812
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    |||||||||||||   ||| ||||||||||||| |||||||| || |||||||||||  |||||||||||||| ||||||| ||| || ||  |||||||    
T  50953961 tgaagcttcaacactgacgaaaactccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaattttcaacaaaattttcttttgtc 50953862  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| ||||||||||| |||||| |||||| || ||||||    
T  50953861 tctcccggaacatcttccgcgttctctaccattactataattatacaaca 50953812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 9429208 - 9429358
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  9429208 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 9429307  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||| |||||| |||||| ||||||||||    
T  9429308 tctcccggaacatctttcgcattctctaccattactataattaaacaacac 9429358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 7842391 - 7842491
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| | |||||| || |||||||||||  |||||||||||||| || |||| ||| || || ||||||||    
T  7842391 tgaagcttcaacatggacggaagctccatcaatgtctggtttcgcttcaaccttaggcggtttgacatctccggaaatttcaacaaaattttgttttgtc 7842490  T
Q  389 t 389  Q
    |    
T  7842491 t 7842491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 290 - 373
Target Start/End: Original strand, 78392 - 78475
Alignment:
Q  290 gaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    |||||||||||||| | |||| |||||||||| ||||||||| | |||| ||||||  ||||||||||||||||| ||||||||    
T  78392 gaagcttcaacatggatggaagctccatcaatgtttggtttgacttcaatcttaggcggtttgacatctccgaaaatttcgaca 78475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 29930052 - 29929925
Alignment:
Q  312 ctccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgtt 411  Q
    |||||| ||| |||||||| || ||||| |||||  |||||||||||||||||  ||||||| || || ||||||||| | || || |||| | ||||||    
T  29930052 ctccattaatgtttggtttcgcttcaactttaggcggtttgacatctccgaaaaattcgacaaaatttggttttgtctctctcggaacatctttcgcgtt 29929953  T
Q  412 ctcaaccattgctataaataaacaacac 439  Q
    ||| |||||| |||||| ||||||||||    
T  29929952 ctctaccattactataattaaacaacac 29929925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 29979206 - 29979079
Alignment:
Q  312 ctccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgtt 411  Q
    |||||| ||| |||||||| || ||||| |||||  |||||||||||||||||  ||||||| || || ||||||||| | || || |||| | ||||||    
T  29979206 ctccattaatgtttggtttcgcttcaactttaggcggtttgacatctccgaaaaattcgacaaaatttggttttgtctctctcggaacatctttcgcgtt 29979107  T
Q  412 ctcaaccattgctataaataaacaacac 439  Q
    ||| |||||| |||||| ||||||||||    
T  29979106 ctctaccattactataattaaacaacac 29979079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 23442505 - 23442654
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| | |||| |||||||||| |||| ||| || ||| | |||||  |||||||||||||| || |||||||| || || ||||||||    
T  23442505 tgaagcttcaacatggaaggaagctccatcaatgtttgatttcgcttca-ctttaggcggtttgacatctccggaaatttcgacaaaattttgttttgtc 23442603  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  |  | |||| ||||||||||| |||||| |||||| ||||||||||    
T  23442604 tctcccgaaacatcttccgcgttctctaccattactataattaaacaacac 23442654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 438
Target Start/End: Complemental strand, 16445307 - 16445158
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||  ||||||||||| || || ||||||||    
T  16445307 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccagaattttcgacaaaattttgttttgtc 16445208  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| | ||| ||||| |||||| |||||| || ||||||    
T  16445207 tctcccggaacatctttcgcattctctaccattactataattatacaaca 16445158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 48250026 - 48250158
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  48250026 tttgtgagctccactcctttcacacactagccggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 48250125  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     | ||||| | || ||| ||||| |||||||||    
T  48250126 cgcacccactcaagcaattcatctctatctttc 48250158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 21955399 - 21955495
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttga 175  Q
    ||||||||| ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||||| | ||||  ||||||||||||||||||||||    
T  21955399 tttgtgagctccactcctttcacacactaggcggaacattggattgatcaagcttgatctttgtataacaattgtaaatcccgccttatttgcttga 21955495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 36816675 - 36816807
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  36816675 tttgtgagttccactcctttcacacactagccggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 36816774  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     | ||||| | || ||| ||||| |||||||||    
T  36816775 cgcacccactcaagcaattcatctctatctttc 36816807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 6505117 - 6505216
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  6505117 tttgtgagctccactcctttcacacactaggcggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 6505216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 3949429 - 3949279
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  3949429 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 3949330  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  3949329 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 3949279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 8160359 - 8160509
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  8160359 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 8160458  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  8160459 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 8160509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 30947018 - 30947168
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  30947018 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 30947117  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  30947118 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 30947168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 46992405 - 46992550
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | |||||| |||||||||| || ||| ||||| | |  |||  |||||||||||||||||| ||||||    
T  46992405 tttgtgagctccactcctttcacacactaggcggaacattggattgatcaagtttgatctttgtgtaactattgtaaatcccgccttatttgc-tgacga 46992503  T
Q  179 tgtacccaattaaccaagtcatccctatctttccatttaacttcttc 225  Q
     | ||||| | || ||| ||||| ||||||||| | ||||| |||||    
T  46992504 cgcacccactcaagcaattcatctctatctttcgacttaacgtcttc 46992550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 78177 - 78317
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| ||||||| |||||   |||||||| ||||||||||  | ||| ||||| | | ||||  ||||||||||||||||| |||| ||    
T  78177 tttgtgagcaccactcctttcacgcactaggcgcaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgtttgatga 78276  T
Q  179 tgtacccaattaaccaagtcatccctatctttccatttaac 219  Q
     || |||| | || ||| || || ||||||||||| |||||    
T  78277 cgtgcccactcaagcaattcttctctatctttccacttaac 78317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 13746882 - 13747014
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||||||||| | | ||||  ||||||||||||||||||||| |||    
T  13746882 tttgtgagttccactcctttcacacactagccggaacattggattgatcaagcttgatatttgtgtgacaattgtaaatcccgccttatttgcttgtcga 13746981  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     | ||||| | || ||| ||||| |||| ||||    
T  13746982 cgcacccactcaagcaattcatctctatttttc 13747014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 7838270 - 7838219
Alignment:
Q  310 aactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccg 361  Q
    |||||||||||| |||||||| || |||||||||||  ||||||||||||||    
T  7838270 aactccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccg 7838219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 14399455 - 14399356
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||| |||||||||||||||| ||||||||    
T  14399455 tttgtgagttccactcctttcacacactagccggaacattggattgatcaagcttgatctttgtgtaacaattttaaatcccgccttattttcttgacga 14399356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 29930270 - 29930171
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||     |||||| |||||||||| || ||| ||||| | | ||||  |||||| ||||||||||||||||||    
T  29930270 tttgtgagctccactcctttcacacactaggcagaacattggattgatcaagtttgatctttgtgtaacaattataaatccagccttatttgcttgacga 29930171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 29979424 - 29979325
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||     |||||| |||||||||| || ||| ||||| | | ||||  |||||| ||||||||||||||||||    
T  29979424 tttgtgagctccactcctttcacacactaggcagaacattggattgatcaagtttgatctttgtgtaacaattataaatccagccttatttgcttgacga 29979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 50954176 - 50954045
Alignment:
Q  80 ttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgat 179  Q
    |||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  ||||||||||||||||||||| |||     
T  50954176 ttgtgagttccactcctttcacacactagccggaacattggattgatcaagcttgatctttgtgtgacaattgtaaatcccgccttatttgcttgtcgac 50954077  T
Q  180 gtacccaattaaccaagtcatccctatctttc 211  Q
    | ||||| | || ||| ||||| |||||||||    
T  50954076 gcacccactcaagcaattcatctctatctttc 50954045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 23442363 - 23442420
Alignment:
Q  154 aaatcccgccttatttgcttgacgatgtacccaattaaccaagtcatccctatctttc 211  Q
    ||||||||||||||||||||||||| | ||||| | || ||| ||||| |||||||||    
T  23442363 aaatcccgccttatttgcttgacgacgcacccactcaagcaattcatctctatctttc 23442420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 6741573 - 6741489
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    ||||||||||||||| |||||| || |||| || |||  ||| || ||||  |||||  |||||||||||||| |||||||||||    
T  6741573 tgaagcttcaacatggacggaagcttcatctatgtttactttcgcttcaaaattaggcggtttgacatctccggaattttcgaca 6741489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 7842174 - 7842306
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||  ||||| |||||||||||||   | |||||| ||||||| ||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  7842174 tttgtgagttccactcctttcacacactaggcggaacattggattgataaatcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 7842273  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     | ||||| | || ||| ||| | |||||||||    
T  7842274 agcacccactcaaacaattcaactctatctttc 7842306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 79 - 437
Target Start/End: Complemental strand, 6182579 - 6182224
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||| | ||||| |||||||||| || |||||||||| ||||||||||||||||| |   ||| | ||||| |||||||||  ||||||||||||||    
T  6182579 tttgtgatcaccactcctttcacacaatagttgcaacattggattgatcaaattggatctacttataacaattttaaatcccgcaatatttgcttgacga 6182480  T
Q  179 tgtacccaattaaccaagtcatccctatctttccatttaacttcttcgnnnnnnntagt--tgtgctaacttcgttggcatcaagtgggacaagaccaga 276  Q
     |||||| ||||| ||||||||||||||||||||||||||||| |||        | ||   |||  ||||||||||| ||||||||||||   | | ||    
T  6182479 cgtaccccattaagcaagtcatccctatctttccatttaacttgttcagaaaaaattgtgccgtgtcaacttcgttggtatcaagtgggacggcatcgga 6182380  T
Q  277 gtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaa 376  Q
    || |||||||||||||||||| ||||| ||||||||||||||||||||||  ||| | |||||||||||  || |||||||||||||||| || ||| ||    
T  6182379 gttaacatataatgaagcttctacatggacggaaactccatcaatatttgacttgacttcaaccttaggcggtgtgacatctccgaaattatcaacaaaa 6182280  T
Q  377 attcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaac 437  Q
    ||  ||||||||    ||| | ||||||||||||| |||| |||  |||||||||||||||    
T  6182279 ataggttttgtc----tca-accatcatccgcgttttcaatcataactataaataaacaac 6182224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 18580657 - 18580852
Alignment:
Q  244 aacttcgttggcatcaagtgggacaagaccagagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaacctta 343  Q
    |||||||| ||| | ||||||||  | ||||||||||||||||  ||||||||||||||| |||||| |||||||||| |||||||| || ||||||| |    
T  18580657 aacttcgtgggcttgaagtgggaggacaccagagtcaacatattttgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaacctaa 18580756  T
Q  344 ggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    ||  ||||||||||||   || |||||||| || || ||||||||| |  |  | |||| |||||||| || |||||| |||||| ||||||||||    
T  18580757 ggcggtttgacatctctagaaatttcgacaaaatttggttttgtctctcccgaaacatcttccgcgttatctaccattactataattaaacaacac 18580852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 19073034 - 19073183
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||  |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||||||||||| ||| || || ||||||||    
T  19073034 tgaagcttcaacattgacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccgaaattttcaacaaaattttgttttgtc 19073133  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  |  | |||| ||||||||||| |||||| |||||| || ||||||    
T  19073134 tctcccgaaacatcttccgcgttctctaccattactataattatacaaca 19073183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 244 - 439
Target Start/End: Complemental strand, 17140319 - 17140124
Alignment:
Q  244 aacttcgttggcatcaagtgggacaagaccagagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaacctta 343  Q
    ||||| || ||||| ||||||||  | ||| |||| |||||||   |||||||||||||| ||||||  ||||||||| ||||||||||| | |||||||    
T  17140319 aactttgtgggcatgaagtgggaggacaccggagtgaacatatttagaagcttcaacatggacggaagttccatcaatgtttggtttggctttaacctta 17140220  T
Q  344 ggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    |   ||||||||||||||||| |||||||| || || |||||||||    | ||  ||| ||||||||||| |||||| |||||| ||||||||||    
T  17140219 gacggtttgacatctccgaaaatttcgacaaaatttggttttgtctcacccggaatatcttccgcgttctctaccattactataattaaacaacac 17140124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 21471475 - 21471348
Alignment:
Q  312 ctccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgtt 411  Q
    |||||| ||| |||||||| || ||||||||||||||||||||||||||||||  ||||||| || || ||||||||| |  | || |||| ||||||||    
T  21471475 ctccattaatgtttggtttcgcttcaaccttaggtagtttgacatctccgaaaaattcgacaaaatttggttttgtctctcccggaacatcttccgcgtt 21471376  T
Q  412 ctcaaccattgctataaataaacaacac 439  Q
    ||| |||||| |||||| ||||||||||    
T  21471375 ctctaccattactataattaaacaacac 21471348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 389
Target Start/End: Complemental strand, 41024058 - 41023958
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||  |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||||||||||| ||| || || ||||||||    
T  41024058 tgaagcttcaacattgacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccgaaattttcaacaaaattttgttttgtc 41023959  T
Q  389 t 389  Q
    |    
T  41023958 t 41023958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 439
Target Start/End: Original strand, 51643854 - 51644011
Alignment:
Q  280 aacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaatt 379  Q
    |||||||  ||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||  ||| |||||||||| || |||||||| |||||    
T  51643854 aacatattttgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggttagacatctccggaaatttcgaca-aaatt 51643952  T
Q  380 cgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
     | ||||||| |  | || |||| ||||||||||| |  ||| |||||| ||||||||||    
T  51643953 tggtttgtctctcccggaacatcttccgcgttctcta-aattactataattaaacaacac 51644011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 3404497 - 3404347
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| | |||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || || ||||||||    
T  3404497 tgaagcttcaacatggatggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttgttttgtc 3404398  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| |  || ||||| |||||| |||||| ||||||||||    
T  3404397 tctcccggaacatcttttgcattctctaccattactataattaaacaacac 3404347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 438
Target Start/End: Complemental strand, 4976442 - 4976293
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||| |||||| |||||||| || |||||||||||  |||||||||||||  ||  ||||||| || ||  ||||||     
T  4976442 tgaagcttcaacatggacggaagctcaatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccagaaaattcgacaaaatttgtttttgtt 4976343  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |    || |||| ||||||||||| |||||| |||||| |||||||||    
T  4976342 tctcctggaacatcttccgcgttctctaccattactataattaaacaaca 4976293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 389
Target Start/End: Complemental strand, 9890708 - 9890608
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| |||||| |||| || || ||||||||    
T  9890708 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaatttttgacaaaattttgttttgtc 9890609  T
Q  389 t 389  Q
    |    
T  9890608 t 9890608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 11495295 - 11495168
Alignment:
Q  312 ctccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgtt 411  Q
    |||||| ||| |||||||| || |||||||||||  |||||||||||||| ||  ||||||| || || ||||||||| |  | || |||  ||||||||    
T  11495295 ctccattaatgtttggttttgcttcaaccttaggcggtttgacatctccggaaaattcgacaaaatttggttttgtctctcccggaacattttccgcgtt 11495196  T
Q  412 ctcaaccattgctataaataaacaacac 439  Q
    ||| |||||| |||||| ||||||||||    
T  11495195 ctctaccattactataattaaacaacac 11495168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 3404682 - 3404560
Alignment:
Q  89 ccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgtacccaat 188  Q
    ||||| |||||||||||||  || |||||| ||||||||||| | ||| ||||| | | ||||  ||||||||||||||||||||| ||||| ||||| |    
T  3404682 ccactcctttcacacactagctggaacattggattgatcaaacttgatctttgtgtgacaattgtaaatcccgccttatttgcttgtcgatgcacccact 3404583  T
Q  189 taaccaagtcatccctatctttc 211  Q
     || ||| ||||| |||| ||||    
T  3404582 caagcaattcatctctatttttc 3404560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 374
Target Start/End: Complemental strand, 1088243 - 1088158
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacag 374  Q
    ||||||||||||||| ||||||  |||||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||||    
T  1088243 tgaagcttcaacatggacggaagatccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacag 1088158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 17140489 - 17140349
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||| | |||||||||||||   |||||||| ||||||||||  | ||| ||||| | | ||||  ||||||||||||||||||||||||     
T  17140489 tttgtgagctccattcctttcacacactagacgcaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacgg 17140390  T
Q  179 tgtacccaattaaccaagtcatccctatctttccatttaac 219  Q
     || |||| | || ||| || || ||||||||||| |||||    
T  17140389 cgtgcccactcaagcaattcttctctatctttccacttaac 17140349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 4976658 - 4976559
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  4976658 tttgtgagctccactcctttcacacactaggcggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 4976559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 4979112 - 4979211
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||| ||||||||   | |||||||||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  4979112 tttgtgagctccactcctttaacacactaggcggaacattagattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 4979211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 439
Target Start/End: Original strand, 38464180 - 38464307
Alignment:
Q  312 ctccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgtt 411  Q
    |||||| ||| |||||||| || |||||||||||  |||||||||||| ||||  ||||||| || || ||||||||| |    || |||| || |||||    
T  38464180 ctccattaatgtttggtttcgcttcaaccttaggcggtttgacatctctgaaaaattcgacaaaatttggttttgtctctcctggaacatcttctgcgtt 38464279  T
Q  412 ctcaaccattgctataaataaacaacac 439  Q
    ||| |||||| |||||| ||||||||||    
T  38464280 ctctaccattactataattaaacaacac 38464307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 438
Target Start/End: Original strand, 4979360 - 4979460
Alignment:
Q  338 accttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaac 437  Q
    ||||||||  |||||||||||||| ||| ||||||| || || ||||||||| |  | || |||| || |||||||| |||||| |||||| ||||||||    
T  4979360 accttaggcggtttgacatctccggaatattcgacaaaatttggttttgtctctcccggaacatcttctgcgttctctaccattactataattaaacaac 4979459  T
Q  438 a 438  Q
    |    
T  4979460 a 4979460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 21471693 - 21471561
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| |||||  ||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  21471693 tttgtgagctccactcttttcacacactaggcggaacattggattgatcaatcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 21471594  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     || |||| | || ||| || || |||||||||    
T  21471593 cgtgcccactcaagcaattcttctctatctttc 21471561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 49565839 - 49565989
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||| ||||| ||||||||||| || ||  |||||||    
T  49565839 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacaactccggaattttcgacaaaattttcttttgtc 49565938  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  49565939 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 49565989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 253 - 427
Target Start/End: Original strand, 32275563 - 32275736
Alignment:
Q  253 ggcatcaagtgggacaagaccagagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttg 352  Q
    ||||||||||| ||| | ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||  |||||    
T  32275563 ggcatcaagtgagacgacaccggagtcaacatataatgaagcttcaacatggacggaagctccatcaatattcggtttggcttcaaccttaggcggtttg 32275662  T
Q  353 acatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctata 427  Q
    ||||||||  ||||||||||| ||| | | ||||||| ||  ||||||||||  |||||||||| |||| |||||    
T  32275663 acatctccagaattttcgacaaaaaattg-tttgtctcttctagatcatcatatgcgttctcaagcattactata 32275736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 435
Target Start/End: Original strand, 11692977 - 11693336
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| ||||||||||||| ||| |||||| ||||||||||  | ||| ||||| | | ||||  ||||||| |||||||||||||||||    
T  11692977 tttgtgagctccactcctttcacacactagttggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatccctccttatttgcttgacga 11693076  T
Q  179 tgtacccaattaaccaagtcatccctatctttccatttaacttcttcgnnnnnnn---tagttgtgctaacttcgttggcatcaagtgggacaagaccag 275  Q
     || |||| | || ||| || || ||||||||| | ||||| || ||           |||| |||  |||||||| ||| | ||||||||  | ||| |    
T  11693077 cgtgcccactcaagcaattcttctctatctttcgacttaacgtcgtctgaaaaaaacctagtcgtgtcaacttcgtgggcttgaagtgggaggataccgg 11693176  T
Q  276 agtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacaga 375  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||| |||||||| || |||| ||||||  |||||||||| ||||||  ||||||| |    
T  11693177 agtcaacatattttgaagcttcaacatggacggaaactccatcaatgtttggtttcgcttcaatcttaggcggtttgacatcaccgaaaaattcgacaaa 11693276  T
Q  376 aattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaaca 435  Q
    | || ||||||||| |  | || |||| ||||||||||| |||||| |||||| ||||||    
T  11693277 atttggttttgtctctcccggaacatcttccgcgttctctaccattactataattaaaca 11693336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 439
Target Start/End: Original strand, 34921130 - 34921294
Alignment:
Q  275 gagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacag 374  Q
    |||||| |||||  ||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| || ||||||||     
T  34921130 gagtcagcatattttgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaaatttcgacaa 34921229  T
Q  375 aaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    || || ||||| ||| |  |||| |||| ||||||||||| || ||| |||||| ||||||||||    
T  34921230 aatttggttttctctctcccagaacatcttccgcgttctctactattactataattaaacaacac 34921294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 312 - 445
Target Start/End: Original strand, 22990233 - 22990366
Alignment:
Q  312 ctccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgtt 411  Q
    ||||||||| |||  ||||||| |||||||||||| ||||||||||||   ||||||||||| |||||  |||||||| || | ||||||||||| ||||    
T  22990233 ctccatcaagattaagtttggcttcaaccttaggtggtttgacatctctagaattttcgacaaaaattgattttgtctcttccggatcatcatccacgtt 22990332  T
Q  412 ctcaaccattgctataaataaacaacaccaaact 445  Q
    || ||||||| ||||||||||||||||| |||||    
T  22990333 cttaaccattactataaataaacaacacaaaact 22990366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 24605466 - 24605615
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||| ||| |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| ||  ||||||| || || ||||||||    
T  24605466 tgaagcttcaatatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaaaattcgacaaaatttggttttgtc 24605565  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| ||||||||||| |||||| |||||| |||||||||    
T  24605566 tctcccggaacatcttccgcgttctctaccattactataattaaacaaca 24605615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 289 - 428
Target Start/End: Original strand, 1100459 - 1100598
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| ||| || || ||||||| |||||||| || |||||||||||  |||||||||||||  || |||||||| || || ||||||||    
T  1100459 tgaagcttcaacatggacgaaagcttcatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccagaaatttcgacaaaattttgttttgtc 1100558  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataa 428  Q
    | || |||| |||| ||||||||||| |||||| ||||||    
T  1100559 tcttccagaacatcttccgcgttctctaccattactataa 1100598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 427
Target Start/End: Original strand, 27275737 - 27275875
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||||||| || ||||||||||   |||||||||||||| ||||||||||| || || ||||||||    
T  27275737 tgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttagaaggtttgacatctccggaattttcgacaaaattttgttttgtc 27275836  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctata 427  Q
    | |  | || |||| | ||||||||| |||||| |||||    
T  27275837 tctcccggaacatctttcgcgttctctaccattactata 27275875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 24750341 - 24750191
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| || ||| |||||||||| ||| |||| || |||||||||||  |||||||||||||||||||||| ||| || || ||||||||    
T  24750341 tgaagcttcaacatggaccgaagctccatcaatgtttagtttcgcttcaaccttaggcggtttgacatctccgaaattttcaacaaaattttgttttgtc 24750242  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||| || ||| |||||| ||||||||||    
T  24750241 tctcccggaacatctttcgcattctctactattactataattaaacaacac 24750191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 3802940 - 3803089
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||  |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| ||||||| ||| || || ||||||||    
T  3802940 tgaagcttcaacattgacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaattttcaacaaaattttgttttgtc 3803039  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| || | |||||| |||||| |||||| || ||||||    
T  3803040 tctcccggaacatcttctgtgttctctaccattactataattatacaaca 3803089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 9651878 - 9651728
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    |||||||| |||||| |||||| |||||||||| |||| ||| || |||||||||||  |||||||||||||| || ||| |||| || || ||||||||    
T  9651878 tgaagctttaacatggacggaagctccatcaatgtttgatttcgcttcaaccttaggcggtttgacatctccggaaattttgacaaaatttagttttgtc 9651779  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| ||||| ||||| | |||| |||||| ||||||||||    
T  9651778 tctcccggaacatcttccgcattctctatcattactataattaaacaacac 9651728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 7263718 - 7263568
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| || ||  |||||||||||||| ||||||||||| || ||  |||||||    
T  7263718 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattgggcggtttgacatctccggaattttcgacaaaattttcttttgtc 7263619  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | | || |  |||| | ||| ||||| |||||| |||||| ||||||||||    
T  7263618 tctctcgggacatctttcgcattctctaccattactataattaaacaacac 7263568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 438
Target Start/End: Complemental strand, 39794656 - 39794507
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  39794656 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 39794557  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| | ||| ||||| |||||| |||||| || ||||||    
T  39794556 tctcccggaacatctttcgcattctctaccattactataattatacaaca 39794507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 24750558 - 24750426
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||| |||||||||||||||||||||||||    
T  24750558 tttgtgagttccactcctttcacacactagccggaacattggattgatcaagcttgatctttgtgtgacaattttaaatcccgccttatttgcttgacga 24750459  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     | ||||| | || ||| ||||| |||||||||    
T  24750458 cgcacccactcaagcaattcatctctatctttc 24750426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 38946449 - 38946365
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| |||||||||||    
T  38946449 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgaca 38946365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 22723887 - 22723789
Alignment:
Q  244 aacttcgttggcatcaagtgggacaagaccagagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaacctta 343  Q
    |||||| ||| ||||||||||| | | ||| |||| ||||   |||||| |||||||| |||||||| |||||||||||||||||||| | |||||||||    
T  22723887 aacttcattgacatcaagtggggcgacaccggagttaaca---aatgaaacttcaacacgaacggaagctccatcaatatttggtttgtcttcaacctta 22723791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 439
Target Start/End: Original strand, 41008381 - 41008485
Alignment:
Q  335 tcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaac 434  Q
    |||||||||||  |||||||||||||| ||  ||||||| || || |||||| || || | || |||| ||||||||||| |||||| |||||| |||||    
T  41008381 tcaaccttaggcggtttgacatctccggaaaattcgacaaaatttggttttgactcttccggaacatcttccgcgttctctaccattactataattaaac 41008480  T
Q  435 aacac 439  Q
    |||||    
T  41008481 aacac 41008485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 435996 - 435869
Alignment:
Q  312 ctccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgtt 411  Q
    |||||| ||| |||||||| || |||||||||||  |||||||||||||| ||  ||||||| || || |||||| || |  | || |||| | ||||||    
T  435996 ctccattaatgtttggtttcgcttcaaccttaggaggtttgacatctccggaaaattcgacaaaatttggttttgcctctcccggaacatctttcgcgtt 435897  T
Q  412 ctcaaccattgctataaataaacaacac 439  Q
    ||| |||||| |||||| ||||||||||    
T  435896 ctctaccattactataattaaacaacac 435869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 5335570 - 5335420
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  5335570 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 5335471  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  5335470 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 5335420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 10623829 - 10623979
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  10623829 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 10623928  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  10623929 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 10623979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 27275513 - 27275651
Alignment:
Q  73 cagcattttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgct 172  Q
    ||||| ||||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  ||||||||||||||||||     
T  27275513 cagcactttgtgagttccactcctttcacacactagccggaacattggattgatcaagcttgatctttgtgtgacaattgtaaatcccgccttatttgca 27275612  T
Q  173 tgacgatgtacccaattaaccaagtcatccctatctttc 211  Q
    |||||| | ||||| | || ||| ||||| |||||||||    
T  27275613 tgacgacgcacccactcaagcaattcatctctatctttc 27275651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 45476045 - 45475920
Alignment:
Q  314 ccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttct 413  Q
    |||| ||| |||| ||| || |||||||||||| ||||||||||||||  |  ||||||| || || ||||||||| |  | || |||| ||||||||||    
T  45476045 ccattaatgtttgatttcgcttcaaccttaggtggtttgacatctccgggaaattcgacaaaatttggttttgtctctcccggaacatcttccgcgttct 45475946  T
Q  414 caaccattgctataaataaacaacac 439  Q
    | ||||||  ||||| ||||||||||    
T  45475945 ctaccattattataattaaacaacac 45475920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 436214 - 436082
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | ||||||  |||||||||  | ||| ||||| |   ||||  |||||||||||||||||||||||||    
T  436214 tttgtgagctccactcctttcacacactaggcggaacattgaattgatcaagcttgatctttgtgtagcaattgtaaatcccgccttatttgcttgacga 436115  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     ||||||| | || ||| || || |||||||||    
T  436114 cgtacccactcaagcaattcttctctatctttc 436082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 1100247 - 1100375
Alignment:
Q  83 tgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgta 182  Q
    ||||| ||||| |||||||||||||   | |||||| |||||| |||  | ||| ||||| | | ||||  ||||||||||||||||||||||||| | |    
T  1100247 tgagctccactcctttcacacactaggcggaacattggattgaccaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacgacgca 1100346  T
Q  183 cccaattaaccaagtcatccctatctttc 211  Q
    |||| | || ||| ||||| |||||||||    
T  1100347 cccactcaagcaattcatctctatctttc 1100375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 439
Target Start/End: Original strand, 12907868 - 12907984
Alignment:
Q  323 tttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattg 422  Q
    |||||||| || |||||||||||  |||||||||||||| ||  || |||| || || ||||||||| || | || |||| ||||||||||| ||||||     
T  12907868 tttggtttcgcttcaaccttaggcggtttgacatctccggaaaatttgacaaaatttggttttgtctcttccggaacatcttccgcgttctctaccatta 12907967  T
Q  423 ctataaataaacaacac 439  Q
     ||||| || |||||||    
T  12907968 ttataattagacaacac 12907984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 28355063 - 28355195
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||     |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  28355063 tttgtgagctccactcctttcacacactaggcagaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 28355162  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     || |||| | || ||| || || |||||||||    
T  28355163 cgtgcccactcaagcaattcttctctatctttc 28355195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 41560698 - 41560614
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| |||||||||||    
T  41560698 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgaca 41560614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 32275455 - 32275526
Alignment:
Q  154 aaatcccgccttatttgcttgacgatgtacccaattaaccaagtcatccctatctttccatttaacttcttc 225  Q
    ||||| |||| |||||||||||| |  ||||||||||| ||| |||| ||||| |||||| |||||||||||    
T  32275455 aaatcgcgccatatttgcttgaccacatacccaattaagcaaatcatacctatatttccaattaacttcttc 32275526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 41008139 - 41008238
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||| ||||||||||||||||||||    
T  41008139 tttgtgagctccactcctttcacacactaggcggaacatttgattgatcaagcttgatctttgtgtaacaattgtaaattccgccttatttgcttgacga 41008238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 43949441 - 43949540
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||     |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  43949441 tttgtgagctccactcctttcacacactaggcagaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 43949540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 9652094 - 9651996
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacg 177  Q
    ||||||||| ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||| |||||||||||||||||    
T  9652094 tttgtgagctccacttctttcacacactaggcggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcctgccttatttgcttgacg 9651996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 438
Target Start/End: Original strand, 22711663 - 22711705
Alignment:
Q  396 gatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    ||||||||||||| |||||||||||  ||||||||||||||||    
T  22711663 gatcatcatccgcattctcaaccatatctataaataaacaaca 22711705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 28355279 - 28355320
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggttt 330  Q
    ||||||||||||||| |||||| |||||||||| ||||||||    
T  28355279 tgaagcttcaacatggacggaagctccatcaatgtttggttt 28355320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 212816 - 212900
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||  |||||||||||    
T  212816 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccagaattttcgaca 212900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 271 - 438
Target Start/End: Original strand, 2051981 - 2052148
Alignment:
Q  271 accagagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcg 370  Q
    ||||||| ||||||||  ||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||||||  ||||    
T  2051981 accagagccaacatattttgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccgaaaaattcg 2052080  T
Q  371 acagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    ||| || || ||||||||| |  | || |||| ||||||||||| ||||||||||||| |||||||||    
T  2052081 acaaaatttggttttgtctctcccggaacatcttccgcgttctctaccattgctataattaaacaaca 2052148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 31147068 - 31146918
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| ||||| || || |||||| ||||  |||||||||||||| || |||||||| || |  ||||||||    
T  31147068 tgaagcttcaacatggacggaagctccatcaatgtttggcttcgcttcaaccctaggcggtttgacatctccggaaatttcgacaaaattatgttttgtc 31146969  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  |||| |||| ||||||||||| |||||| |||||| ||||||||||    
T  31146968 tctcccagaacatcttccgcgttctctaccattactataattaaacaacac 31146918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 13388069 - 13388219
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || || ||||||||    
T  13388069 tgaagcttcaacatggacggaagctccatcaatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttgttttgtc 13388168  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||| |||||| |||||| ||||||||||    
T  13388169 tctcccggaacatctttcgcattctctaccattactataattaaacaacac 13388219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 35243291 - 35243141
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| ||| || |||||||||| |||||||| || ||||| |||||  |||||||||||||| || |||||||| || || |||||||     
T  35243291 tgaagcttcaacatggacgaaagctccatcaatgtttggtttcgcttcaactttaggcggtttgacatctccggaaatttcgacaaaattttgttttgta 35243192  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| ||||||||||| |||||| |||||| ||||||||||    
T  35243191 tctcccggaacatcttccgcgttctctaccattactataattaaacaacac 35243141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 279 - 439
Target Start/End: Complemental strand, 28250592 - 28250432
Alignment:
Q  279 caacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaat 378  Q
    ||||||| | ||||||||||||||| |||||| ||||| |||| |||||||| || ||||| |||||  |||||||||||||| |||||||||||  | |    
T  28250592 caacatacattgaagcttcaacatggacggaagctccaccaatgtttggtttcgcttcaacattaggcggtttgacatctccggaattttcgacaacatt 28250493  T
Q  379 tcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | ||||||||| |  | || |||| | ||| || || |||||| |||||| ||||||||||    
T  28250492 tggttttgtctctcccggaacatctttcgcattatctaccattactataattaaacaacac 28250432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 289 - 438
Target Start/End: Complemental strand, 7361866 - 7361717
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||| ||| || |||||||||||  | || ||||||||| ||  ||||||| || || | ||||||    
T  7361866 tgaagcttcaacatggacggaacctccatcaatgtttgatttcgcttcaaccttaggcggctttacatctccggaaaattcgacaaaatttggctttgtc 7361767  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| ||||||||||| |||||| |||||| |||||||||    
T  7361766 tttcccggaacatcttccgcgttctctaccattactataattaaacaaca 7361717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 7362720 - 7362869
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    |||||||||||| || |||||| |||||||||| |||||||| || |||||||||||  |||| |||||| || ||  ||||||  || || ||||||||    
T  7362720 tgaagcttcaacgtggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggttttacatcttcgtaaaattcgacgaaatttggttttgtc 7362819  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| ||||||||||| |||||| |||||| |||||||||    
T  7362820 tctcccggaacatcttccgcgttctctaccattactataattaaacaaca 7362869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 18606898 - 18606799
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | |||||| |||||||||| || ||| ||||| | | ||||| |||||||||||||||||||||||||    
T  18606898 tttgtgagctccactcctttcacacactaggcggaacatttgattgatcaagtttgatctttgtgtaacaattttaaatcccgccttatttgcttgacga 18606799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 439
Target Start/End: Complemental strand, 26702427 - 26702323
Alignment:
Q  335 tcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaac 434  Q
    |||||||||||  |||| |||||||||||| |||||||| || || ||||||||| |  | || |||| ||||||||||| |||||| |||||| |||||    
T  26702427 tcaaccttaggcggttttacatctccgaaaatttcgacaaaattttgttttgtctctcccggaacatcttccgcgttctctaccattactataattaaac 26702328  T
Q  435 aacac 439  Q
    |||||    
T  26702327 aacac 26702323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 24219922 - 24219852
Alignment:
Q  275 gagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttagg 345  Q
    ||||||||||||   |||||||||||||| |||||| |||||||||| ||||||||||  |||||||||||    
T  24219922 gagtcaacatatttagaagcttcaacatggacggaagctccatcaatgtttggtttggtttcaaccttagg 24219852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 24220060 - 24219926
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   |||||||| ||||||||||  | ||| ||||| | | ||||  ||||||| |||||||||||||||||    
T  24220060 tttgtgagctccactcctttcacacactaggcgcaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccaccttatttgcttgacga 24219961  T
Q  179 tgtacccaattaaccaagtcatccctatctttcca 213  Q
     || |||| | || ||| || || |||||||||||    
T  24219960 cgtgcccactcaagcaattcttctctatctttcca 24219926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 7362504 - 7362603
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  7362504 tttgtgagctccactcctttcacacactatgcggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 7362603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 1612125 - 1612275
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  1612125 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 1612224  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  1612225 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 1612275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 18347728 - 18347644
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||  |||||  |||||||||||| | |||||||||||    
T  18347728 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaatattaggcggtttgacatctctggaattttcgaca 18347644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 439
Target Start/End: Complemental strand, 18606669 - 18606553
Alignment:
Q  323 tttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattg 422  Q
    |||||||| || |||||||||||  |||||||| ||||| ||  ||| ||| || ||  |||||||| | || || |||| ||||||||||| ||||||     
T  18606669 tttggtttcgcttcaaccttaggcggtttgacaactccggaaaattcaacaaaatttgattttgtctctctcggaacatcttccgcgttctctaccatta 18606570  T
Q  423 ctataaataaacaacac 439  Q
    |||||| ||||||||||    
T  18606569 ctataattaaacaacac 18606553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 29288325 - 29288395
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctc 359  Q
    ||||||||||||||| ||  || |||||||||| |||||||| || |||| ||||||  ||||||||||||    
T  29288325 tgaagcttcaacatggacaaaagctccatcaatgtttggtttcgcttcaatcttaggcggtttgacatctc 29288395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 23985666 - 23985715
Alignment:
Q  271 accagagtcaacatataatgaagcttcaacatgaacggaaactccatcaa 320  Q
    ||||||||||||||||   |||||||||||||| |||||| |||||||||    
T  23985666 accagagtcaacatatttagaagcttcaacatggacggaatctccatcaa 23985715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 389
Target Start/End: Complemental strand, 22578663 - 22578518
Alignment:
Q  244 aacttcgttggcatcaagtgggacaagaccagagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaacctta 343  Q
    |||||||| ||| | ||||||||  | ||| ||||||||||||  ||||||||||||||| |||||| |||||||||| |||||||| || |||||||||    
T  22578663 aacttcgtgggcttgaagtgggaggacaccggagtcaacatattttgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaacctta 22578564  T
Q  344 ggtagtttgacatctccgaaattttcgacagaaattcgttttgtct 389  Q
    || | ||||||||||||  || |||||||| ||||| |||||||||    
T  22578563 ggcaatttgacatctccagaaatttcgacaaaaattggttttgtct 22578518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 290 - 445
Target Start/End: Complemental strand, 22657781 - 22657625
Alignment:
Q  290 gaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaa-ttcgttttgtc 388  Q
    |||||||||||||| | |||| |||||||||| ||||||||| | |||||||||||  |||||||||||||| | ||||||||| ||| || ||| ||||    
T  22657781 gaagcttcaacatggaaggaagctccatcaatgtttggtttgacttcaaccttaggcggtttgacatctccggatttttcgacaaaaatttggttctgtc 22657682  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacaccaaact 445  Q
    | |  | ||||||| || ||||||||||||||| |||||| |||||||||| |||||    
T  22657681 tctcccggatcatcttctgcgttctcaaccattactataattaaacaacacaaaact 22657625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 20547478 - 20547328
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| ||| ||  ||||||||| |||||||| || |||||||||||  |||||||||||||| ||||||||||| || || ||||||||    
T  20547478 tgaagcttcaacatggacgaaagttccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaattttcgacaaaattttgttttgtc 20547379  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||||||||| |||||| |||||| ||||||||||    
T  20547378 tctcccggaacatctttcgcgttctctaccattactataattaaacaacac 20547328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 35966123 - 35966273
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||  ||||||||||||||||| |||||||| || ||  |||||||    
T  35966123 tgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccgaaaatttcgacaaaattttattttgtc 35966222  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  |  | |||| ||||||||||| |||||| |||||| || |||||||    
T  35966223 tctcccgaaacatcttccgcgttctctaccattactataattatacaacac 35966273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 45455061 - 45454911
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||  || |||||||| || || ||||||||    
T  45455061 tgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccagaaatttcgacaaaattttgttttgtc 45454962  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | | ||  | |||| |||||| |||| |||||| |||||| ||||||||||    
T  45454961 tctctcgaaacatcttccgcgatctctaccattactataattaaacaacac 45454911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 289 - 438
Target Start/End: Complemental strand, 43370451 - 43370302
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||||||| || ||||||||||  ||||||||||||||||||  ||||||| || ||  |||||||    
T  43370451 tgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttagacagtttgacatctccgaaaaattcgacaaaatttgattttgtc 43370352  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| |||| |||||| |||||| |||||| |||||||||    
T  43370351 tctcccggaacatcttccgtgttctctaccattactataattaaacaaca 43370302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 439
Target Start/End: Original strand, 39752391 - 39752551
Alignment:
Q  279 caacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaat 378  Q
    ||||||||  ||||||||||||||  |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| ||  ||||||| || |    
T  39752391 caacatattttgaagcttcaacatagacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaaaattcgacaaaatt 39752490  T
Q  379 tcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    |  |||||||| |  | || |||| ||||||||||| |||||| |||||| ||||||||||    
T  39752491 tgattttgtctctcccggaacatcttccgcgttctctaccattactataattaaacaacac 39752551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 438
Target Start/End: Complemental strand, 4867357 - 4866995
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||| | ||||| |||||||||||||   |||||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  4867357 tttgtgaactccactcctttcacacactaggcgcaacattggattgatcaatcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 4867258  T
Q  179 tgtacccaattaaccaagtcatccctatctttccatttaacttcttcgnnnnnnn---tagttgtgctaacttcgttggcatcaagtgggacaagaccag 275  Q
     || |||| | || ||| || || ||||||||| | ||||| || ||           |||  |||  |||||||| ||||| ||||||||  | ||| |    
T  4867257 cgtgcccactcaagcaattcttctctatctttctacttaacgtcgtctgaaaaaaacctagccgtgtcaacttcgtgggcatgaagtgggaggacacccg 4867158  T
Q  276 agtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacaga 375  Q
    |||||||||||   ||||||| |||||| |||||| |||||||||| ||||||||||| | || ||||||  |||||||||||||  || | |||||| |    
T  4867157 agtcaacatatttagaagcttaaacatggacggaagctccatcaatgtttggtttggctttaatcttaggcggtttgacatctcccgaaatgtcgacaaa 4867058  T
Q  376 aattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | || ||||| ||| |  | || |||| ||||||||||| |||||| | |||| |||||||||    
T  4867057 atttggttttttctctcccggaacatcttccgcgttctctaccattacgataattaaacaaca 4866995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 437
Target Start/End: Complemental strand, 7168606 - 7168445
Alignment:
Q  275 gagtcaacatataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacag 374  Q
    ||||||||||||   |||||||||||||| |||||| |||||||| | |||||||| || ||||||||  |  |||||||||||||| || ||||||||     
T  7168606 gagtcaacatatttagaagcttcaacatggacggaagctccatcagtgtttggttttgcttcaacctt-cgcggtttgacatctccggaaatttcgacaa 7168508  T
Q  375 aaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaacaac 437  Q
    || || ||||||||| |  | || |||| ||||||||||| | |||| |||||| ||||||||    
T  7168507 aatttggttttgtctctcccggaacatcttccgcgttctctaacattactataattaaacaac 7168445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 1115458 - 1115374
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| |||||||||||    
T  1115458 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgaca 1115374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 439
Target Start/End: Original strand, 43689570 - 43689674
Alignment:
Q  335 tcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcagatcatcatccgcgttctcaaccattgctataaataaac 434  Q
    |||||||||||  |||||||||||||||||  ||||||| || || ||||||||| |  | || |||| ||||||||||| |||||| |||||| |||||    
T  43689570 tcaaccttaggcggtttgacatctccgaaaaattcgacaaaatttggttttgtctctcccggaacatcttccgcgttctctaccattactataactaaac 43689669  T
Q  435 aacac 439  Q
    |||||    
T  43689670 aacac 43689674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 2146359 - 2146509
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| | |||| |||||||| | ||| |||| || |||||| ||||  |||||||||||||| ||  ||||||| || || ||||| ||    
T  2146359 tgaagcttcaacatggatggaagctccatcagtttttagtttcgcttcaaccataggcggtttgacatctccggaaaattcgacaaaatttggttttttc 2146458  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| ||||||||||| || ||| |||||| ||||||||||    
T  2146459 tctcccggaacatcttccgcgttctctacaattactataattaaacaacac 2146509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 43689329 - 43689428
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| ||||||||||||    | |||||| |||||||||| || ||| ||||| | ||||||  |||| ||||||||||||||||||||    
T  43689329 tttgtgagctccactcctttcacacacttggcggaacattggattgatcaagtttgatctttgtgtaataattgtaaattccgccttatttgcttgacga 43689428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 7340765 - 7340615
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  7340765 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 7340666  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  7340665 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 7340615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 30304985 - 30305135
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  30304985 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 30305084  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  30305085 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 30305135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 32378283 - 32378433
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  32378283 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 32378382  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  32378383 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 32378433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 32432240 - 32432390
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| ||||||||||| || ||  |||||||    
T  32432240 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgacaaaattttcttttgtc 32432339  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |  | || |||| | ||| ||||  |||||| |||||| ||||||||||    
T  32432340 tctcccggaacatctttcgcattctttaccattactataattaaacaacac 32432390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 2146149 - 2146281
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  ||||||| |||||||||||||||||    
T  2146149 tttgtgagctccacttctttcacacactaggcggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccaccttatttgcttgacga 2146248  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     || |||| | || ||| || || |||||||||    
T  2146249 cgtgcccactcaagcaattcttctctatctttc 2146281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 8423231 - 8423315
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgaca 373  Q
    ||||||||||||||| |||||| || |||| || |||| ||| || ||||  |||||  |||||||||||||| |||||||||||    
T  8423231 tgaagcttcaacatggacggaagcttcatctatgtttgttttcgcttcaaaattaggcggtttgacatctccggaattttcgaca 8423315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 35965906 - 35966038
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   |  ||||| ||||||||||  | ||| ||||| | ||||||  ||||||||||||||||| |||||||    
T  35965906 tttgtgagctccactcctttcacacactaggcgagacattggattgatcaagcttgatctttgtgtaataattgtaaatcccgccttatttgattgacga 35966005  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     |  |||| | || ||| ||||| |||||||||    
T  35966006 cgcgcccactcaagcaattcatctctatctttc 35966038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Original strand, 14402267 - 14402308
Alignment:
Q  397 atcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    |||||||||||| |||||||||||  ||||||||||||||||    
T  14402267 atcatcatccgcattctcaaccataactataaataaacaaca 14402308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 14864316 - 14864393
Alignment:
Q  282 catataatgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctc 359  Q
    ||||||||| || ||||||||| ||| || |||||| ||| ||||||||| | ||||||||||| ||| |||| ||||    
T  14864316 catataatgcagattcaacatggacgaaagctccattaatgtttggtttgacttcaaccttaggcagtgtgacctctc 14864393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 211
Target Start/End: Complemental strand, 20547683 - 20547562
Alignment:
Q  90 cactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgatgtacccaatt 189  Q
    |||| |||||||||||||  || |||||| ||||||||||  | ||| ||||| | | ||||  |||||||| ||||||||||||| || | ||||| |     
T  20547683 cactcctttcacacactagctggaacattggattgatcaagcttgatctttgtgtgacaattgtaaatcccgacttatttgcttgaagacgcacccactc 20547584  T
Q  190 aaccaagtcatccctatctttc 211  Q
    || ||| ||||| |||||||||    
T  20547583 aagcaattcatctctatctttc 20547562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 39752263 - 39752320
Alignment:
Q  154 aaatcccgccttatttgcttgacgatgtacccaattaaccaagtcatccctatctttc 211  Q
    |||||||||||||||||||||||||||| |||| | || ||| || || |||||||||    
T  39752263 aaatcccgccttatttgcttgacgatgtgcccactcaagcaattcttctctatctttc 39752320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 16733 - 16882
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||  |||||| |||||||||| |||||||| || |||||||||||  |||||||||||||| ||||||| ||| || || ||||||||    
T  16733 tgaagcttcaacattgacggaagctccatcaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaattttcaacaaaattttgttttgtc 16832  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| ||||||||||| |||||| |||||| || ||||||    
T  16833 tctcccggaacatcttccgcgttctctaccattactataattatacaaca 16882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 16518 - 16649
Alignment:
Q  80 ttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacgat 179  Q
    |||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  ||||||||||||||||||||| |||     
T  16518 ttgtgagttccactcctttcacacactagccggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgtcgac 16617  T
Q  180 gtacccaattaaccaagtcatccctatctttc 211  Q
    | ||||| | || ||| ||||| |||||||||    
T  16618 gcacccactcaagcaattcatctctatctttc 16649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 438
Target Start/End: Complemental strand, 16383 - 16234
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| |||||||||| |||||||| || ||||||||||    ||||||||||||||||  ||||||| || || ||||||||    
T  16383 tgaagcttcaacatggacggaagctccatcaatgtttggtttcgcttcaaccttagacgatttgacatctccgaaaaattcgacaaaatttggttttgtc 16284  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| | |||||| || |||||| |||||| |||||||||    
T  16283 tctcccggaacatctttcgcgttttctaccattactataattaaacaaca 16234  T

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Target: scaffold0219; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 16972 - 16873
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||| ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  16972 tttgtgagctccactcctttcacacactaggcggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 16873  T

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Target: scaffold0116 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 439
Target Start/End: Complemental strand, 11956 - 11814
Alignment:
Q  297 caacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtctatttcag 396  Q
    ||||||| | |||| |||||| ||| |||||||| || |||||||||||  |||||||||||||| || |||||||| || ||  |||||||| |  | |    
T  11956 caacatggaaggaagctccatgaatgtttggtttcgcttcaaccttaggcggtttgacatctccggaaatttcgacaaaattttattttgtctctcccgg 11857  T
Q  397 atcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
    | |||| ||||||||||| |||||| |||||| ||||||||||    
T  11856 aacatcttccgcgttctctaccattactataattaaacaacac 11814  T

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Target: scaffold0116; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 12162 - 12030
Alignment:
Q  79 tttgtgagcgccactactttcacacactaattgcaacattagattgatcaaattggatatttgtatcataatttaaaatcccgccttatttgcttgacga 178  Q
    ||||||||  ||||| |||||||||||||   | |||||| ||||||||||  | ||| ||||| | | ||||  |||||||||||||||||||||||||    
T  12162 tttgtgagttccacttctttcacacactagccggaacattggattgatcaagcttgatctttgtgtaacaattgtaaatcccgccttatttgcttgacga 12063  T
Q  179 tgtacccaattaaccaagtcatccctatctttc 211  Q
     | ||||| | || ||| ||||| |||||||||    
T  12062 cgcacccactcaagcaattcatctctatctttc 12030  T

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Target: scaffold0340 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 439
Target Start/End: Original strand, 547 - 696
Alignment:
Q  290 gaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtct 389  Q
    |||||||||||||| |||||| || ||||||| |||||||| || | |||||||||  ||||||||||| ||||| |||||||| || || |||||||||    
T  547 gaagcttcaacatggacggaagcttcatcaatgtttggtttcgctttaaccttaggcggtttgacatcttcgaaaatttcgacaaaatttggttttgtct 646  T
Q  390 atttcagatcatcatccgcgttctcaaccattgctataaataaacaacac 439  Q
     |  | || |||| |||| |||||| || ||| ||||||  |||||||||    
T  647 ctcccggaacatcttccgtgttctctactattactataataaaacaacac 696  T

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Target: scaffold0101 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 289 - 438
Target Start/End: Complemental strand, 33495 - 33346
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    ||||||||||||||| |||||| ||||||| || |||| ||| || ||||| |||||  |||||||||||||| ||||||||||| || || ||||||||    
T  33495 tgaagcttcaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatctccggaattttcgacaaaattttgttttgtc 33396  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| | ||| ||||| |||||| |||||| || ||||||    
T  33395 tctcccggaacatctttcgcattctctaccattactataattatacaaca 33346  T

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Target: scaffold0494 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 438
Target Start/End: Complemental strand, 1567 - 1418
Alignment:
Q  289 tgaagcttcaacatgaacggaaactccatcaatatttggtttggcctcaaccttaggtagtttgacatctccgaaattttcgacagaaattcgttttgtc 388  Q
    |||||||| |||||| |||||| ||||||| || |||| ||| || ||||| |||||  ||||||||||| || ||||||||||| || || ||||||||    
T  1567 tgaagctttaacatggacggaagctccatctatgtttgttttcgcttcaacattaggcggtttgacatcttcggaattttcgacaaaattttgttttgtc 1468  T
Q  389 tatttcagatcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    | |  | || |||| | ||| ||||| |||||| |||||| || ||||||    
T  1467 tctcccggaacatctttcgcattctctaccattactataattatacaaca 1418  T

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Target: scaffold0363 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Complemental strand, 16586 - 16545
Alignment:
Q  397 atcatcatccgcgttctcaaccattgctataaataaacaaca 438  Q
    |||||||||||| |||||||||||  ||||||||||||||||    
T  16586 atcatcatccgcattctcaaccataactataaataaacaaca 16545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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