View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9164_low_16 (Length: 446)

Name: NF9164_low_16
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9164_low_16
NF9164_low_16
[»] chr3 (13 HSPs)
chr3 (8-429)||(36001783-36002204)
chr3 (258-306)||(23446685-23446733)
chr3 (259-306)||(23453461-23453508)
chr3 (259-306)||(23477985-23478032)
chr3 (259-306)||(23498434-23498481)
chr3 (259-306)||(23351382-23351429)
chr3 (118-168)||(23351520-23351570)
chr3 (118-166)||(23404231-23404279)
chr3 (118-166)||(23462850-23462898)
chr3 (113-168)||(23471958-23472013)
chr3 (259-305)||(23385721-23385767)
chr3 (118-155)||(23385871-23385908)
chr3 (113-166)||(23439424-23439477)
[»] chr4 (1 HSPs)
chr4 (51-362)||(12897349-12897660)
[»] chr2 (2 HSPs)
chr2 (37-363)||(16337865-16338191)
chr2 (37-363)||(16120973-16121299)


Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 429
Target Start/End: Complemental strand, 36002204 - 36001783
Alignment:
Q  8 gagcagagacccatgcattattatgattgaatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgc 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  36002204 gagcaaagacccatgcattattatgattgaatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttgatgaaaattga 36002105  T
Q  108 gcttgattattccaaagacctggttgagatcccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactc 207  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36002104 gcttgattattccaaagacctggttgagataccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactc 36002005  T
Q  208 catgaatccattttgactgcccccaagcttagttatctacgtttagacggctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctta 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36002004 catgaatccattttgactgcccccaagcttagttatctacgtttagacggctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctcttg 36001905  T
Q  308 aatcactcagtctcaatgattgttcatctcttgtggaattttctgtgacatcagaaaatatgactgggttgtatttatcttgtactgctatacaagaatt 407  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36001904 aatcactcagtctcaataattgttcatctcttgtggaattttctgtgacatcagaaaatatgactgggttgtatttatcttgtaccgctatacaagaatt 36001805  T
Q  408 accctcatccatgtggcataat 429  Q
    ||||||||||||||||| ||||    
T  36001804 accctcatccatgtggcgtaat 36001783  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 23446733 - 23446685
Alignment:
Q  258 ctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt 306  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  23446733 ctgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctctt 23446685  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 23453508 - 23453461
Alignment:
Q  259 tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt 306  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  23453508 tgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctctt 23453461  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 23478032 - 23477985
Alignment:
Q  259 tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt 306  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  23478032 tgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctctt 23477985  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 23498481 - 23498434
Alignment:
Q  259 tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt 306  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  23498481 tgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctctt 23498434  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 23351429 - 23351382
Alignment:
Q  259 tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctctt 306  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  23351429 tgcataaagattgaaagccttaaaaccaacattcattcaaaatctctt 23351382  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 23351570 - 23351520
Alignment:
Q  118 tccaaagacctggttgagatcccagacttatctagggcgccaaatcttgaa 168  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||||    
T  23351570 tccaaagatctgattgagatcccagacttatctagggctacaaatcttgaa 23351520  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 23404279 - 23404231
Alignment:
Q  118 tccaaagacctggttgagatcccagacttatctagggcgccaaatcttg 166  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||    
T  23404279 tccaaagatctgattgagatcccagacttatctagggctacaaatcttg 23404231  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 23462898 - 23462850
Alignment:
Q  118 tccaaagacctggttgagatcccagacttatctagggcgccaaatcttg 166  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||    
T  23462898 tccaaagatctgattgagatcccagacttatctagggctacaaatcttg 23462850  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 23472013 - 23471958
Alignment:
Q  113 attattccaaagacctggttgagatcccagacttatctagggcgccaaatcttgaa 168  Q
    |||| |||||||| ||| ||||||||||| |||||||||||||  |||||||||||    
T  23472013 attactccaaagatctgattgagatcccaaacttatctagggctacaaatcttgaa 23471958  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 23385767 - 23385721
Alignment:
Q  259 tgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctct 305  Q
    |||| ||||||| ||||||| ||| ||||||||||||||||||||||    
T  23385767 tgcataaagattgaaagccttaaatccaacattcattcaaaatctct 23385721  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 23385908 - 23385871
Alignment:
Q  118 tccaaagacctggttgagatcccagacttatctagggc 155  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  23385908 tccaaagatctgattgagatcccagacttatctagggc 23385871  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 23439477 - 23439424
Alignment:
Q  113 attattccaaagacctggttgagatcccagacttatctagggcgccaaatcttg 166  Q
    |||| |||||||| ||| |||||||||| ||||||||||||||  |||||||||    
T  23439477 attactccaaagatctgattgagatccccgacttatctagggctacaaatcttg 23439424  T

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Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 51 - 362
Target Start/End: Original strand, 12897349 - 12897660
Alignment:
Q  51 tgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgcgcttgattattccaaagacctggttgagatcccagacttatct 150  Q
    |||||| ||||||||||||||| | |||||||| || |||||||| ||||  |||  ||||||||| ||||||||| || ||||||||||||||||||||    
T  12897349 tgaacaatgtgatgtttcttttttcctacagaagcttgacaatttgatgattattatgcttgattactccaaagacttgattgagatcccagacttatct 12897448  T
Q  151 agggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactccatgaatccattttgactgcccccaagcttagttatctacgtt 250  Q
    | ||||||||| |||||||||||||||||||| ||||| |||| ||||||  ||||||||  ||||||||| |||||||| ||||||||  | |||  ||    
T  12897449 aaggcgccaaaacttgaactagtatctctttcttattgcgagagtctctgccaactccatccatccattttcactgccccgaagcttagagaactatatt 12897548  T
Q  251 tagacggctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctcttaaatcactcagtctcaatgattgttcatctcttgtggaattttc 350  Q
    || | || |||||||||||| ||||||||||||| ||||||||||||||||||||   | |||||   |||| |||||||||||||||   ||| |||||    
T  12897549 taaaaggttgcaaaaagattgaaagcctgaaaactaacattcattcaaaatctctccgaacactcgagctcactgattgttcatctctcaaggagttttc 12897648  T
Q  351 tgtgacatcaga 362  Q
     |||||||||||    
T  12897649 ggtgacatcaga 12897660  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 37 - 363
Target Start/End: Original strand, 16337865 - 16338191
Alignment:
Q  37 aatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgcgcttgattattccaaagacctggttgaga 136  Q
    |||||| || |||||||||| ||||||||||||||  | |||||||| || ||||||||||  |  |||   |||||| | ||  |||||||| ||||||    
T  16337865 aatttaatgatttctgaacaatgtgatgtttctttcttcctacagaagcttgacaatttaacaatcattaaacttgataactctgaagacctgattgaga 16337964  T
Q  137 tcccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactccatgaatccattttgactgcccccaagct 236  Q
    | || |||||||| || || || |||||| || || |||||||| | ||||||| || ||||  | ||||||||   |||||||| | ||||||||||||    
T  16337965 ttccggacttatcaagagcaccgaatcttaaaatattatctcttgcttattgtgtgagtctccatcaactccatccttccattttcagtgcccccaagct 16338064  T
Q  237 tagttatctacgtttagacggctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctcttaaatcactcagtctcaatgattgttcatct 336  Q
    |||  | ||| | ||| | || || ||||||||| |||||||   |||  |||||||||||||||||||  ||  |||   ||||| ||||||||||||     
T  16338065 tagagaactatgcttaaaaggttgtaaaaagattgaaagccttgtaactgacattcattcaaaatctctccaaagactggatctcactgattgttcatcc 16338164  T
Q  337 cttgtggaattttctgtgacatcagaa 363  Q
    || ||  |||||| |||||||||||||    
T  16338165 ctcgtacaattttgtgtgacatcagaa 16338191  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 363
Target Start/End: Complemental strand, 16121299 - 16120973
Alignment:
Q  37 aatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgcgcttgattattccaaagacctggttgaga 136  Q
    |||||| || |||||||||| ||||||||||||||  | |||||||| || ||||||||||  |  |||   |||||| | ||  |||||||| ||||||    
T  16121299 aatttaatgatttctgaacaatgtgatgtttctttcttcctacagaagcttgacaatttaacaatcattaaacttgataactctgaagacctgattgaga 16121200  T
Q  137 tcccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactccatgaatccattttgactgcccccaagct 236  Q
    | || |||||||| || || || |||||| || || |||||||| | |||||||  | ||||  | ||||||||  ||||||||| | ||||||||||||    
T  16121199 ttccggacttatcaagagcaccgaatcttaaaatattatctcttgcttattgtgtaagtctccatcaactccatccatccattttcagtgcccccaagct 16121100  T
Q  237 tagttatctacgtttagacggctgcaaaaagattaaaagcctgaaaaccaacattcattcaaaatctcttaaatcactcagtctcaatgattgttcatct 336  Q
    |||  | ||| | ||| | || || | ||||||| |||||||   |||  |||||||||||||||||||   | ||||   ||||| ||||||||||||     
T  16121099 tagagaactatgcttaaaaggttgtacaaagattgaaagccttgtaactgacattcattcaaaatctctcctaacactggatctcactgattgttcatcc 16121000  T
Q  337 cttgtggaattttctgtgacatcagaa 363  Q
    || ||  |||||| |||||||||||||    
T  16120999 ctcgttcaattttgtgtgacatcagaa 16120973  T

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