View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9164_low_17 (Length: 440)
Name: NF9164_low_17
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_17 |
 | |
|
| [»] scaffold1113 (3 HSPs) |
| | |
|
| [»] scaffold0961 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold1113 (Bit Score: 146; Significance: 9e-77; HSPs: 3)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 2231 - 2057
Alignment:
| Q |
53 |
agtctctctcccaatcttccacaaatgactgacgaggagaattctaagccaactacttgggtcatctcaggacccacatataccggcaaaaggagatctg |
152 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2231 |
agtctctcccccaatcttccacaaatgactgacgaggagaaatctaagccaactacttgggtcatctcaggacccacatataccggcaaaaggagatctg |
2132 |
T |
|
| Q |
153 |
ggccaaaaaccggcaaacttctcatcaaaaatgatagagatcaccaggcatgannnnnnngatcgttagctatgc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2131 |
ggccaaaaaccggcaaacttctcatcaaaaatgatagagatcaccaggcatgatttttttgatcgttagctatgc |
2057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 290 - 422
Target Start/End: Complemental strand, 1994 - 1862
Alignment:
| Q |
290 |
acctgcagacttattatgatatcttttatgatgaaatgatcgaagacgttcgtagttgcatcaataagcctgatgctgatttaaatcacgaggcaagttt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1994 |
acctgcagacttattatgatatcttttatgatgaaatgatcaaagacgttcgtagttgcatcaataagcctgatgctgatttaaatcacgaggcaagttt |
1895 |
T |
|
| Q |
390 |
ttctctaacaatgattttgattcaagttttaca |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1894 |
ttctctaacaatgattttgattcaagttttaca |
1862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 97 - 52
Alignment:
| Q |
378 |
cgaggcaagtttttctctaacaatgattttgattc-aagttttaca |
422 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
97 |
cgaggcaagtttttctctaacaataattttgattctaagttttaca |
52 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 1386 - 1560
Alignment:
| Q |
53 |
agtctctctcccaatcttccacaaatgactgacgaggagaattctaagccaactacttgggtcatctcaggacccacatataccggcaaaaggagatctg |
152 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1386 |
agtctctcccccaatcttccacaaatgactgacgaggagaaatctaagccaactacttgggtcatctcaggacccacatataccggcaaaaggagatctg |
1485 |
T |
|
| Q |
153 |
ggccaaaaaccggcaaacttctcatcaaaaatgatagagatcaccaggcatgannnnnnngatcgttagctatgc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1486 |
ggccaaaaaccggcaaacttctcatcaaaaatgatagagatcaccaggcatgatttttttgatcgttagctatgc |
1560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 290 - 422
Target Start/End: Original strand, 1623 - 1755
Alignment:
| Q |
290 |
acctgcagacttattatgatatcttttatgatgaaatgatcgaagacgttcgtagttgcatcaataagcctgatgctgatttaaatcacgaggcaagttt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1623 |
acctgcagacttattatgatatcttttatgatgaaatgatcaaagacgttcgtagttgcatcaataagcctgatgctgatttaaatcacgaggcaagttt |
1722 |
T |
|
| Q |
390 |
ttctctaacaatgattttgattcaagttttaca |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1723 |
ttctctaacaatgattttgattcaagttttaca |
1755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 422
Target Start/End: Original strand, 32684192 - 32684235
Alignment:
| Q |
380 |
aggcaagtttttctctaacaatgattttgattc-aagttttaca |
422 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
32684192 |
aggcaagtttttctctaacaataattttgattctaagttttaca |
32684235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 422
Target Start/End: Original strand, 32692090 - 32692133
Alignment:
| Q |
380 |
aggcaagtttttctctaacaatgattttgattc-aagttttaca |
422 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
32692090 |
aggcaagtttttctctaacaataattttgattctaagttttaca |
32692133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University