View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9164_low_20 (Length: 433)

Name: NF9164_low_20
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9164_low_20
NF9164_low_20
[»] chr4 (5 HSPs)
chr4 (276-415)||(56226561-56226700)
chr4 (86-188)||(56226462-56226564)
chr4 (75-159)||(56227030-56227114)
chr4 (86-133)||(6258147-6258194)
chr4 (25-84)||(34319213-34319272)
[»] scaffold0291 (1 HSPs)
scaffold0291 (1-85)||(13351-13433)
[»] chr1 (4 HSPs)
chr1 (273-370)||(11937930-11938027)
chr1 (76-160)||(32772091-32772174)
chr1 (86-160)||(27745556-27745630)
chr1 (23-68)||(1097628-1097673)
[»] chr6 (2 HSPs)
chr6 (273-365)||(8554837-8554929)
chr6 (108-149)||(34423396-34423438)
[»] chr5 (7 HSPs)
chr5 (273-365)||(7806649-7806741)
chr5 (86-200)||(29594906-29595020)
chr5 (85-179)||(29595549-29595643)
chr5 (86-136)||(27345917-27345967)
chr5 (1-57)||(15341713-15341769)
chr5 (85-133)||(38129125-38129173)
chr5 (85-133)||(38129844-38129892)
[»] chr7 (3 HSPs)
chr7 (85-148)||(3314954-3315017)
chr7 (86-200)||(3315397-3315511)
chr7 (43-85)||(35791920-35791962)
[»] chr8 (3 HSPs)
chr8 (87-179)||(33321498-33321590)
chr8 (86-132)||(44656319-44656365)
chr8 (1-84)||(15226262-15226346)
[»] chr2 (3 HSPs)
chr2 (16-71)||(27597309-27597365)
chr2 (84-147)||(3203859-3203923)
chr2 (25-70)||(19000037-19000082)
[»] chr3 (3 HSPs)
chr3 (86-158)||(20808583-20808655)
chr3 (17-84)||(31293025-31293093)
chr3 (87-199)||(54308454-54308566)
[»] scaffold0009 (1 HSPs)
scaffold0009 (38-85)||(53671-53718)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 276 - 415
Target Start/End: Original strand, 56226561 - 56226700
Alignment:
Q  276 ttactcctgagttcacacaataaaccccacaagtgcctatcattttgcctttagatgtaaataatacccttcgttttgtctcaaatgaatgattcattct 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  56226561 ttactcctgagttcacacaataaaccccacaagtgcctatcattttgcctttagatgtaaataatatccttcgttttgtctcaaatgaatgattcattct 56226660  T
Q  376 tcttggccattgcccattggtaaccatgctctggtagtgt 415  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  56226661 tcttggccattgcccattggtaaccatgctctggtagtgt 56226700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 56226462 - 56226564
Alignment:
Q  86 ggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactttatttaaccattaaatttaataagaccataggatctaattattagtgat 185  Q
    |||||||| |||| | |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  56226462 ggtggattctaagatgagggatcaattaagtctctcaccgatgtaccactttatttaaccattagatttaataagaccataggatctaattattactgat 56226561  T
Q  186 tac 188  Q
    |||    
T  56226562 tac 56226564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 56227114 - 56227030
Alignment:
Q  75 ctataataatgggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactttatttaaccattaaatttaataa 159  Q
    |||||||||  |||||||| ||  || |||| ||||| |||||| |||||| ||||||||||||||||||| ||  |||||||||    
T  56227114 ctataataaacggtggattctagagtgagggctcaatgaagtccttcaccggtgtaccactttatttaaccgttggatttaataa 56227030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 6258194 - 6258147
Alignment:
Q  86 ggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtacca 133  Q
    |||||||| |||||| ||||  ||||||||||||||||||||||||||    
T  6258194 ggtggattctaaggtgagggagcaattaagtccctcaccgatgtacca 6258147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 34319272 - 34319213
Alignment:
Q  25 attttggactgacttttcattattttaattataactttaaacaaatattactataataat 84  Q
    |||||||||| |||||| || |||||||||||| |||| ||||||| || ||||||||||    
T  34319272 attttggacttactttttataattttaattatatctttgaacaaatttttctataataat 34319213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 13433 - 13351
Alignment:
Q  1 tactacatataaaagaaatatgagattttggactgacttttcattattttaattataactttaaacaaatattactataataatg 85  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13433 tactacatataaaagaaat--gagattttggactgacttttcattattttcattataactttaaacaaatattactataataatg 13351  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 370
Target Start/End: Original strand, 11937930 - 11938027
Alignment:
Q  273 tatttactcctgagttcacacaataaaccccacaagtgcctatcattttgcctttagatgtaaataatacccttcgttttgtctcaaatgaatgattc 370  Q
    ||||||||||| |||||||| |||||||||||||||| || ||||||||||||| |||| ||||| ||| | ||| |||| |||| ||||||| ||||    
T  11937930 tatttactcctcagttcacaaaataaaccccacaagttccaatcattttgccttcagatctaaatcatatctttcattttctctcgaatgaataattc 11938027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 32772091 - 32772174
Alignment:
Q  76 tataataatgggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactttatttaaccattaaatttaataag 160  Q
    ||||||||||| | |||| |||||| |||| ||||||||| |||||||||||||||||||||| || ||||||| ||| ||||||    
T  32772091 tataataatgg-tagattctaaggtgagggctcaattaagcccctcaccgatgtaccactttaattgaccattagattaaataag 32772174  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 27745556 - 27745630
Alignment:
Q  86 ggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactttatttaaccattaaatttaataag 160  Q
    |||||||| |||||| |||| ||||||||||||||||||||| |||||||||| || | ||||| ||| ||||||    
T  27745556 ggtggattctaaggtgagggttcaattaagtccctcaccgatataccactttaattgatcattagattaaataag 27745630  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 1097673 - 1097628
Alignment:
Q  23 agattttggactgacttttcattattttaattataactttaaacaa 68  Q
    |||||||||||| | |||||||||||||||||||| | ||||||||    
T  1097673 agattttggactaaattttcattattttaattatatcattaaacaa 1097628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 8554929 - 8554837
Alignment:
Q  273 tatttactcctgagttcacacaataaaccccacaagtgcctatcattttgcctttagatgtaaataatacccttcgttttgtctcaaatgaat 365  Q
    ||||||||||| |||||||| |||||||||||||||| || ||||||||||||| |||| ||||| ||| | ||| |||| |||| |||||||    
T  8554929 tatttactcctcagttcacaaaataaaccccacaagttccaatcattttgccttcagatctaaatcatatctttcattttctctcgaatgaat 8554837  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 34423396 - 34423438
Alignment:
Q  108 caattaagtccctcaccgatgtaccactt-tatttaaccatta 149  Q
    ||||||||||||||||||||||||||||| ||||| |||||||    
T  34423396 caattaagtccctcaccgatgtaccacttatattttaccatta 34423438  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 365
Target Start/End: Original strand, 7806649 - 7806741
Alignment:
Q  273 tatttactcctgagttcacacaataaaccccacaagtgcctatcattttgcctttagatgtaaataatacccttcgttttgtctcaaatgaat 365  Q
    ||||||||||| |||||||| |||||||||||||||| || ||||||||||||| |||| ||||| ||| | ||| |||| |||| |||||||    
T  7806649 tatttactcctcagttcacaaaataaaccccacaagttccaatcattttgccttcagatctaaatcatatctttcattttctctcgaatgaat 7806741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 29594906 - 29595020
Alignment:
Q  86 ggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactttatttaaccattaaatttaataagaccataggatctaattattagtgat 185  Q
    |||||||| || ||| |||| |||||||||| | ||||||||||||||||||||||   ||||  ||| |||||||||||| || || |||||| ||||     
T  29594906 ggtggattctagggtgagggttcaattaagttcttcaccgatgtaccactttatttggtcattggattaaataagaccatatgaactcattatttgtgac 29595005  T
Q  186 tacactggatctaat 200  Q
     ||| ||||||||||    
T  29595006 cacattggatctaat 29595020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 29595643 - 29595549
Alignment:
Q  85 gggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactttatttaaccattaaatttaataagaccataggatctaattatt 179  Q
    ||||||||| ||  || |||| ||||||||||||||||||  ||||||| ||||||| ||||||| ||| |||||||| ||| ||||| ||||||    
T  29595643 gggtggattctagcgtgagggttcaattaagtccctcaccagtgtaccagtttatttgaccattagattaaataagactataagatctcattatt 29595549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 27345967 - 27345917
Alignment:
Q  86 ggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactt 136  Q
    |||||||| || ||| |||| ||||||||||||||||||||| ||||||||    
T  27345967 ggtggattctagggtgagggttcaattaagtccctcaccgatataccactt 27345917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15341713 - 15341769
Alignment:
Q  1 tactacatataaaagaaatatgagattttggactgacttttcattattttaattata 57  Q
    ||||| |||||||  |||||||||||||||  ||||||||||||||| | |||||||    
T  15341713 tactatatataaagaaaatatgagattttgtgctgacttttcattatctcaattata 15341769  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 38129125 - 38129173
Alignment:
Q  85 gggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtacca 133  Q
    ||||||||| |||||| ||||  |||||||||||||||||| |||||||    
T  38129125 gggtggattctaaggtgagggagcaattaagtccctcaccggtgtacca 38129173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 38129892 - 38129844
Alignment:
Q  85 gggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtacca 133  Q
    ||||||||| |||||| ||||  |||||||||||||||||| |||||||    
T  38129892 gggtggattttaaggtgagggaacaattaagtccctcaccggtgtacca 38129844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 3314954 - 3315017
Alignment:
Q  85 gggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactttatttaaccatt 148  Q
    ||||||||| || ||| |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  3314954 gggtggattctacggtgagggttcaattaagtccctcaccggtgtaccactttatttaaccatt 3315017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 3315511 - 3315397
Alignment:
Q  86 ggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactttatttaaccattaaatttaataagaccataggatctaattattagtgat 185  Q
    |||||||| |||||| |||| ||||||||||||||||||| | || ||||| ||||||||||   ||| |||||||||||| || || |||||| ||||     
T  3315511 ggtggattctaaggtgagggctcaattaagtccctcaccggtataacacttaatttaaccatcggattaaataagaccatatgaactcattatttgtgac 3315412  T
Q  186 tacactggatctaat 200  Q
     ||| ||||||||||    
T  3315411 cacattggatctaat 3315397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 35791920 - 35791962
Alignment:
Q  43 attattttaattataactttaaacaaatattactataataatg 85  Q
    ||||||||||||||| |||||||||||| || |||||||||||    
T  35791920 attattttaattatacctttaaacaaattttcctataataatg 35791962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 33321498 - 33321590
Alignment:
Q  87 gtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactttatttaaccattaaatttaataagaccataggatctaattatt 179  Q
    ||||||| |||||| | || ||||||||||||||||| ||||||||| ||||||| ||||||  ||| |||||||| ||| ||||| ||||||    
T  33321498 gtggattctaaggtgatggttcaattaagtccctcactgatgtaccaatttatttgaccattggattaaataagactataagatctcattatt 33321590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 44656365 - 44656319
Alignment:
Q  86 ggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtacc 132  Q
    |||||||| |||||| ||||  |||||||||||||||||||||||||    
T  44656365 ggtggattctaaggtgagggagcaattaagtccctcaccgatgtacc 44656319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 15226346 - 15226262
Alignment:
Q  1 tactacatataaaagaaatatgagattttggactgactttt-cattattttaattataactttaaacaaatattactataataat 84  Q
    ||||| |||||||  |||||| ||||||| ||||||||||| |||||| | ||||||||| | |||||| | || ||||||||||    
T  15226346 tactatatataaacaaaatataagatttttgactgacttttccattatctcaattataacctaaaacaactttttctataataat 15226262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 27597309 - 27597365
Alignment:
Q  16 aaatatgagattttggactgac-ttttcattattttaattataactttaaacaaata 71  Q
    |||||||||||||||||||||| |||||||||||| ||||||| | |||||||||||    
T  27597309 aaatatgagattttggactgactttttcattatttcaattatagccttaaacaaata 27597365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 3203859 - 3203923
Alignment:
Q  84 tgggtggattgtaaggtaagg-ggtcaattaagtccctcaccgatgtaccactttatttaaccat 147  Q
    |||||||||| || ||||| | |||||||||||||| ||||||||||||||||  ||||||||||    
T  3203859 tgggtggattctagggtaaagaggtcaattaagtccttcaccgatgtaccactaaatttaaccat 3203923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 19000037 - 19000082
Alignment:
Q  25 attttggactgacttttcattattttaattataactttaaacaaat 70  Q
    |||||||||| ||||||||||||  |||||||| ||||||||||||    
T  19000037 attttggacttacttttcattatcctaattatacctttaaacaaat 19000082  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 20808655 - 20808583
Alignment:
Q  86 ggtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactttatttaaccattaaatttaata 158  Q
    |||||||| || ||| |||| |||| |||||||||||||| ||||||| |  ||| |||||||||||||||||    
T  20808655 ggtggattctagggtgagggttcaagtaagtccctcaccggtgtaccattaaattaaaccattaaatttaata 20808583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 31293025 - 31293093
Alignment:
Q  17 aatatgagattttggactgacttttc-attattttaattataactttaaacaaatattactataataat 84  Q
    |||||||||||||||||||| ||||  |||||||||||||||  ||||| ||||| || ||||||||||    
T  31293025 aatatgagattttggactgatttttttattattttaattatacttttaagcaaatttttctataataat 31293093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 54308454 - 54308566
Alignment:
Q  87 gtggattgtaaggtaaggggtcaattaagtccctcaccgatgtaccactttatttaaccattaaatttaataagaccataggatctaattattagtgatt 186  Q
    ||||||| || ||| |||| ||||||||||||||||||| || |||||||  ||| ||| ||| ||| |||||  | ||  ||||| |||||||||   |    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtgaaccacttattttgaccgttagattaaataatcctatttgatctcattattagtttct 54308553  T
Q  187 acactggatctaa 199  Q
    |||||||||||||    
T  54308554 acactggatctaa 54308566  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 53671 - 53718
Alignment:
Q  38 ttttcattattttaattataactttaaacaaatattactataataatg 85  Q
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T  53671 ttttcattatttcaattatatctttaaacaaatttttctataataatg 53718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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