View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_low_29 (Length: 350)
Name: NF9164_low_29
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 333
Target Start/End: Original strand, 32248647 - 32248968
Alignment:
| Q |
10 |
gagtttggtgttgttgttgctagttttgttattgaattgcactcttttccttcgtgaggatttatcctacttcttgggttttggtctagtccccccaaga |
109 |
Q |
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| T |
32248647 |
gagtttggtcttgttgttgctagttttgttattgaattgcactctattccttcgtgaggatttatcctacttcttgggttttggtctagtctccc-aaga |
32248745 |
T |
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| Q |
110 |
tgtttattgtatttctttatctatcaataaatttgttagtttgttgcaaattatagtagtgaatttggggtgttaatctaattaggattaggatatcaag |
209 |
Q |
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| T |
32248746 |
tgtttattgtatttaattatctatcaataaatttgttagtttgttgcaaattatagtagtgaattttgggtgttaat-taattaggattaagatatcaag |
32248844 |
T |
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| Q |
210 |
tttttcttctaatgtccatgcactctaaattttgcaaagttgaacatgatttccatcgagaggaggaatgcaatagacttgtcatagaatcaacaaacaa |
309 |
Q |
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| T |
32248845 |
tttttcttctaatgtccatgcactctaaattttgcaaagttgaacatgatttccatcgagaggaggaatgcaatagacttgtcatagaatcaacaaacaa |
32248944 |
T |
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| Q |
310 |
aatttatgtggacaagatgctatt |
333 |
Q |
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| T |
32248945 |
aatttatgtggacaagatgctatt |
32248968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 32236485 - 32236620
Alignment:
| Q |
87 |
gttttggtctagtccccccaagatgtttattgtatttctttatctatcaataaatttgttagtttgttgcaaattatagtagtgaatttggggtgttaat |
186 |
Q |
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| T |
32236485 |
gttttggtctagtccccccaagatgtttattgtatatctttctctatcaataaatttgttagtttgttgcaaattatagtagtgaattttgggtgttaat |
32236584 |
T |
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| Q |
187 |
ctaattaggattaggatatcaagtttttcttctaat |
222 |
Q |
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| T |
32236585 |
ctaattaggattatgatatcaagtttttcttctaat |
32236620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 37 - 323
Target Start/End: Original strand, 32254943 - 32255215
Alignment:
| Q |
37 |
gttattgaattgcactcttttccttcgtgaggatttatcctacttcttgggttttggtctagtccccccaagatgtttattgtatttctttatctatcaa |
136 |
Q |
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||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| | |||| |
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| T |
32254943 |
gttattgaattgcactctttttcttcatgagcggttatcctacttcttgggttttggtctatcccttccaagatttttattgtatttcttta--tgtcaa |
32255040 |
T |
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| Q |
137 |
taaatttgttagtttgttgcaaattata-gtagtgaatttggggtgttaatctaattaggattaggatatcaagtttttcttctaatgtccatgcactct |
235 |
Q |
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| T |
32255041 |
taaatttgttagggtgttgcaaatgataggtagtgaattttgggtgtcaactta------attaggatgtcaactttttcttctgatgtccatgcactct |
32255134 |
T |
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| Q |
236 |
aaattttgcaaagttgaacatgatttccatcgagaggaggaatgcaatagacttgtcatagaatcaacaaacaaaatttatgtggaca |
323 |
Q |
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| T |
32255135 |
aatatttgcaaagttgaacatgattcccat--ggaggaggaatgcaatagact-----tagaatcaataagcaaaatttatgtggaca |
32255215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 299
Target Start/End: Original strand, 23202952 - 23203128
Alignment:
| Q |
116 |
ttgtatttctttatctatcaataaatttgttagtttgttgcaaattatag-tagtgaatttggggtgttaatctaattaggattaggatatcaagttttt |
214 |
Q |
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| T |
23202952 |
ttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaatttaggatctcaacctagttaggatg------tcaagctcat |
23203045 |
T |
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| Q |
215 |
cttctaatgtccatgcactctaaattttgcaaagttgaacatgatttccatcgagaggaggaatgcaatagacttgtcatagaat |
299 |
Q |
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| T |
23203046 |
catctaatgcccatgcactctaatttttgcaaagttgaacatgacttccat--ggaggatgaatgcaatatacttatcatagaat |
23203128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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