View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_low_32 (Length: 342)
Name: NF9164_low_32
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 26 - 325
Target Start/End: Original strand, 43996186 - 43996485
Alignment:
| Q |
26 |
tctcagttccattacaactaacctttcctggttcaggacatgcttatgtgacatttaccaacttacactcttactgatattaataatacatcagtttgtg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43996186 |
tctcagttccattacaactaacctttcctggttcaggacatgcttatgtgacatttaccaacttacactcttactgatattaataatacatcagtttgtg |
43996285 |
T |
|
| Q |
126 |
taataaaattaaattttcacttgaagatcacaccattagctttgaagtttcaatttctactatcaataatctgcatacaattccatcatcttaccttaca |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43996286 |
taataaaattaaattttcacttgaagatcacaccattagctttgaagtttcaatttctactatcaataatctgcatacaattccatcatcttaccttaca |
43996385 |
T |
|
| Q |
226 |
caaaaatacaaatggttaactctaaaaaatgtaacaaacaatttcttcgattatcttgcaatgagaaatgagagtttacactttttacacatttcataac |
325 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43996386 |
caaaaatacaaatggttaactctaaaaaatttaacaaacaatttcttcgattatcttgcaatgagaaatgagagtttacactttttacacatttcataac |
43996485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43996074 - 43996122
Alignment:
| Q |
1 |
ttaagcggcaattcacatcatatcctctcagttccattacaactaacct |
49 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43996074 |
ttaagcggcaattcacatcatatcatctcagttccattacaactaacct |
43996122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 11685379 - 11685492
Alignment:
| Q |
82 |
accaacttacactcttactgatattaataatacatcagtttgtgtaataaaattaaattttcacttgaagatcacaccatt-agctttgaagtttcaatt |
180 |
Q |
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|||||||| ||||||| |||||| || || || ||||||||||||| |||| |||||||||| || ||||||| ||||| |||||||||||||||||| |
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| T |
11685379 |
accaacttctactcttattgatatcaacaacacctcagtttgtgtaacaaaactaaattttcatttcgagatcacgccatttagctttgaagtttcaatt |
11685478 |
T |
|
| Q |
181 |
tctactatcaataa |
194 |
Q |
| |
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|||| ||||||||| |
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|
| T |
11685479 |
tctagtatcaataa |
11685492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 662236 - 662288
Alignment:
| Q |
26 |
tctcagttccattacaactaacctttcctggttcaggacatgcttatgtgaca |
78 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
662236 |
tctcagttccattccaactaacctttcctggttcaggacatgcttgtgtgaca |
662288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 909709 - 909657
Alignment:
| Q |
26 |
tctcagttccattacaactaacctttcctggttcaggacatgcttatgtgaca |
78 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
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| T |
909709 |
tctcagttccattccaagtaacctttcctggttcaggacatgcttgtgtgaca |
909657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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