View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_low_33 (Length: 341)
Name: NF9164_low_33
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 51360509 - 51360190
Alignment:
| Q |
16 |
attcaatcccatgatgagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttcaatatacttgc |
115 |
Q |
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| T |
51360509 |
attcaatcccatgatgagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttcaatatacttgc |
51360410 |
T |
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| Q |
116 |
ttgcacttggtggtggtggaatcagaggttgtgttcctgctctaggagcagatcaatttgatgatatgaatccaaaagaatatctccaactagcaagctt |
215 |
Q |
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| T |
51360409 |
ttgcacttggtggtggtggaatcagaggttgtgttcctgctctaggagcagatcaatttgatgatatgaatccaaaagaatatctccaactagcaagctt |
51360310 |
T |
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| Q |
216 |
cttcaattggtttttgtttagtattacaattggtgctagcttaggtgtcacttttgtagtttatgttagcacaatcttcgattggtacaaaggttttctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51360309 |
cttcaattggtttttgtttagtattacaattggtgctagcttaggtgtcacttttgtagtttatgttagcacaatcttcgattggtacaaaggttttctt |
51360210 |
T |
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| Q |
316 |
atatctctcacaggttctgc |
335 |
Q |
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| T |
51360209 |
atatctctctcatgttctgc |
51360190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 51351138 - 51350938
Alignment:
| Q |
16 |
attcaatcccatgatgagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttcaatatacttgc |
115 |
Q |
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||||||||||||| |||||||||||||||| |||| |||||||| | |||||||| |||| |||||||||||| ||||||||||||| |||||||||| |
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| T |
51351138 |
attcaatcccatgctgagaaacttcagccacaact--gtggaaaacaaagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatatacttgc |
51351041 |
T |
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| Q |
116 |
ttgcacttggtggtggtggaatcagaggttgtgttcctgctctaggagcagatcaatttgatgatatgaatccaaaagaatatctccaactagcaagctt |
215 |
Q |
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|||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||| | ||||||||| || |||||||||||| ||||| |
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| T |
51351040 |
ttgcacttggtggtggtgaaatcaaaggctgtgttcctgctctaggagctgatcaatttgatgacaagaatccaaaggaccgtctccaactagctagctt |
51350941 |
T |
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| Q |
216 |
ctt |
218 |
Q |
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||| |
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| T |
51350940 |
ctt |
51350938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 51350919 - 51350847
Alignment:
| Q |
252 |
tagcttaggtgtcacttttgtagtttatgttagcacaatcttcgattggtacaaaggttttcttatatctctc |
324 |
Q |
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||||||||||| ||| ||||||||| ||||||| || ||| | ||||||||||||||||||||||||||| |
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| T |
51350919 |
tagcttaggtgccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctc |
51350847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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