View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_low_36 (Length: 327)
Name: NF9164_low_36
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 41044674 - 41044969
Alignment:
| Q |
17 |
gtggacatgcttcattaagataagaaaataacaaaagttaaaaacattttactaagataaaacaataagatgcataagatacatacttacttatcatgca |
116 |
Q |
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| T |
41044674 |
gtggacatgcttcattaagataagaaaataacaaaagttaaaaacattttactaagataaaacaataagatgcataagatacatacttacttatcatgca |
41044773 |
T |
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| Q |
117 |
agttaatccttgaggacagaaaaacccttcacaacaaggttgacaatcatcaattcttgaaggaatatcttttatatcatttttgagatcaattctctca |
216 |
Q |
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| T |
41044774 |
agttaatccttgaggacagaaaaacccttcacaacaaggttgacaatcatcaattcttgaaggaatatcttttatatcatttttgagatcaattctctca |
41044873 |
T |
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| Q |
217 |
gcagcactacaactccaaccaggttcacaaccagaaccccatgaagtcaagttgcaatttatgttaggttttacataacttgcagatgtgccttgt |
312 |
Q |
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| T |
41044874 |
gcagcactacaactccaaccaggttcacaaccagaaccccatgaagtcaagttgcaatttatgttaggttttacataacttgcagatgtgccttgt |
41044969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 304
Target Start/End: Complemental strand, 28085038 - 28084833
Alignment:
| Q |
99 |
atacttacttatcatgcaagttaatccttgaggacagaaaaacccttcacaacaaggttgacaatcatcaattcttgaaggaatatcttttatatcattt |
198 |
Q |
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|||||||| |||||| ||||| |||||||||||||||||||| || || |||||||||| ||| | | |||| ||||| || ||||| || ||| |
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| T |
28085038 |
atacttacgtatcatacaagtcaatccttgaggacagaaaaaaccctcgcaacaaggtttacagtttttggttctctttggaatttcctttatgtccttt |
28084939 |
T |
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| Q |
199 |
ttgagatcaattctctcagcagcactacaactccaaccaggttcacaaccagaaccccatgaagtcaagttgcaatttatgttaggttttacataacttg |
298 |
Q |
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| T |
28084938 |
tttagatcaatatccttgcctgcactacaagcccatccaggttcacaaccggaaacccatgaggtcaaattgcaattcttgttaggttttacataatttt |
28084839 |
T |
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| Q |
299 |
cagatg |
304 |
Q |
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|||||| |
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| T |
28084838 |
cagatg |
28084833 |
T |
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