View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9164_low_37 (Length: 326)

Name: NF9164_low_37
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9164_low_37
NF9164_low_37
[»] chr3 (4 HSPs)
chr3 (1-314)||(8652856-8653186)
chr3 (1-64)||(8653659-8653722)
chr3 (13-65)||(45500531-45500583)
chr3 (1-61)||(45501236-45501296)
[»] chr2 (5 HSPs)
chr2 (1-190)||(36391003-36391189)
chr2 (13-65)||(14573319-14573371)
chr2 (187-224)||(29920969-29921006)
chr2 (13-65)||(38834445-38834498)
chr2 (187-227)||(36391204-36391244)
[»] chr8 (7 HSPs)
chr8 (1-190)||(40450795-40450988)
chr8 (23-122)||(41348816-41348913)
chr8 (12-122)||(788083-788192)
chr8 (187-227)||(10501715-10501755)
chr8 (77-190)||(35758524-35758632)
chr8 (187-227)||(40450740-40450780)
chr8 (13-61)||(5035218-5035266)
[»] chr6 (5 HSPs)
chr6 (7-189)||(21982560-21982748)
chr6 (23-97)||(1035309-1035383)
chr6 (23-97)||(9427413-9427487)
chr6 (194-227)||(21982769-21982802)
chr6 (13-57)||(33018225-33018269)
[»] chr1 (5 HSPs)
chr1 (7-190)||(27420113-27420288)
chr1 (13-57)||(50827037-50827081)
chr1 (13-61)||(6076032-6076080)
chr1 (13-65)||(31390761-31390813)
chr1 (13-65)||(47334257-47334309)
[»] chr4 (7 HSPs)
chr4 (39-123)||(8503605-8503689)
chr4 (23-154)||(49398480-49398606)
chr4 (12-122)||(5825391-5825500)
chr4 (23-97)||(38014828-38014902)
chr4 (13-62)||(11806149-11806198)
chr4 (13-65)||(9939180-9939233)
chr4 (13-65)||(21165505-21165558)
[»] chr7 (3 HSPs)
chr7 (23-154)||(41533964-41534090)
chr7 (23-154)||(44909213-44909339)
chr7 (23-65)||(24322289-24322331)
[»] chr5 (1 HSPs)
chr5 (7-65)||(33283217-33283275)
[»] scaffold0041 (1 HSPs)
scaffold0041 (13-61)||(27279-27327)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 8652856 - 8653186
Alignment:
Q  1 agtaaattttcaccatttgattaaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctctcct 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8652856 agtaaattttcaccatttgattaaatgaggaacacattttaatcctactctctcaacactagatttttccacattatcttctaccatcactctctctcct 8652955  T
Q  101 ccatggtcactcacccaccaccttcagcataaggccactgtttctgtccaagctctcatcaacattgttcaattcttcttgaattgcaaacaataattaa 200  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8652956 ccatggtcagtcacccaccacctccagcataaggccactgtttctgtccaagctctcatcaacattgttcaattcttcttgaattgcaaacagtaattaa 8653055  T
Q  201 atttatttattatc-----------------caaatctaatgaagttgtggacaatgcaagtctacaacaacacaaatcaaaagttaattccgagagnnn 283  Q
    ||||||||||||||                 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       
T  8653056 atttatttattatccaaatctaatgaattttcaaatctaatgaagttgtggacactgcaagtctacaacaacacaaatcaaaagttaattccgagagaaa 8653155  T
Q  284 nnnncatgatggcttacaatattttcttttg 314  Q
        |||||||||||||||||||| ||||||    
T  8653156 aaaacatgatggcttacaatatttccttttg 8653186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 8653722 - 8653659
Alignment:
Q  1 agtaaattttcaccatttgattaaatgagaaacacattttaatcatactctctcaacactagat 64  Q
    |||||||||| |||||||||| |||||||||||||| | | |||||| || |||||||||||||    
T  8653722 agtaaattttaaccatttgatcaaatgagaaacacactcttatcatattccctcaacactagat 8653659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 45500531 - 45500583
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaacactagatt 65  Q
    ||||| ||||||||||| |||||||| | ||  ||||||||||||||||||||    
T  45500531 ccattagattaaatgaggaacacattcttattctactctctcaacactagatt 45500583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 45501296 - 45501236
Alignment:
Q  1 agtaaattttcaccatttgattaaatgagaaacacattttaatcatactctctcaacacta 61  Q
    |||||||||  |||||| ||| ||||||  |||||||||||||| |||||||| |||||||    
T  45501296 agtaaatttaaaccattggatcaaatgaagaacacattttaatcctactctctaaacacta 45501236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 36391003 - 36391189
Alignment:
Q  1 agtaaattttcaccatttgattaaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctctcct 100  Q
    |||||||||| |||||| ||| ||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36391003 agtaaattttaaccattagatcaaatgaggaacacattttaatcctattctctcaacactagatttttccacactatcttctaccatcactctctctcct 36391102  T
Q  101 ccatggtcactcacccaccaccttcagcataaggccactgtttctgtccaagctctcatcaacattgttcaattcttcttgaattgcaaa 190  Q
    |||||||||||||||||||||   |||||||||||||||||||||||| || |||||||||||| | |||||||||||||||||||||||    
T  36391103 ccatggtcactcacccaccac---cagcataaggccactgtttctgtctaaactctcatcaacactcttcaattcttcttgaattgcaaa 36391189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 14573319 - 14573371
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaacactagatt 65  Q
    ||||| ||||||||||| || | ||||| ||||||||||||||||||||||||    
T  14573319 ccattagattaaatgaggaatatatttttatcatactctctcaacactagatt 14573371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 29920969 - 29921006
Alignment:
Q  187 caaacaataattaaatttatttattatccaaatctaat 224  Q
    ||||||||||||||||||||||||| || |||||||||    
T  29920969 caaacaataattaaatttatttattctctaaatctaat 29921006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 38834445 - 38834498
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaa-cactagatt 65  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||||| |||||||||    
T  38834445 ccattagattaaatgaggaacatatttttatcatactctctcaaccactagatt 38834498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 36391204 - 36391244
Alignment:
Q  187 caaacaataattaaatttatttattatccaaatctaatgaa 227  Q
    ||||||||| ||||||||||||||  |||||||||||||||    
T  36391204 caaacaatatttaaatttatttatcctccaaatctaatgaa 36391244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 40450988 - 40450795
Alignment:
Q  1 agtaaattttcaccatttgattaaatgagaaacacattttaatcatactctctcaa-------cactagatttttccacattatcttctaccatcactct 93  Q
    |||||||||| |||||| ||| ||||||| |||||||||||||| || ||||||||       ||||| ||||||||||| |||||||||||||||||||    
T  40450988 agtaaattttaaccattagatcaaatgaggaacacattttaatcctattctctcaagtctcaacactatatttttccacactatcttctaccatcactct 40450889  T
Q  94 ctctcctccatggtcactcacccaccaccttcagcataaggccactgtttctgtccaagctctcatcaacattgttcaattcttcttgaattgcaaa 190  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  40450888 ctctcctccatggtcactcacccaccac---cagcataaggccactgtttccgtccaagctctcatcaacactcttcaattcttcttgaattgcaaa 40450795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 41348913 - 41348816
Alignment:
Q  23 aaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctctcctccatggtcactcacccaccacc 122  Q
    ||||||| || ||||||||||||||||||||||   ||||||||||||||| | |||||||||||||   ||||||||||||||||||||||||||||||    
T  41348913 aaatgaggaatacattttaatcatactctctcattgctagatttttccacactttcttctaccatca--ttctctcctccatggtcactcacccaccacc 41348816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 788083 - 788192
Alignment:
Q  12 accatttgattaaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctctcctccatggtcact 111  Q
    |||||| ||| ||||||| |||||||| | ||| ||| |||||||||||| ||||||  ||| ||||||||||||||| |||||||||| |||| || ||    
T  788083 accattagatcaaatgaggaacacattattatcctaccctctcaacactaaatttttt-acactatcttctaccatcattctctctcctgcatgctccct 788181  T
Q  112 cacccaccacc 122  Q
    || ||||||||    
T  788182 catccaccacc 788192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 10501755 - 10501715
Alignment:
Q  187 caaacaataattaaatttatttattatccaaatctaatgaa 227  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  10501755 caaacaatagttaaatttatttattatccaaatctaatgaa 10501715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 35758524 - 35758632
Alignment:
Q  77 tcttctaccatcactctctctcctccatggtcactcacccaccaccttcagcataaggccactgtttctgtccaagctctcatcaacattgttcaattct 176  Q
    |||||||||||||||||  ||||||||||||||||||||||||||   ||||| || | |||| ||| |||||||||| ||||    | | |||||||||    
T  35758524 tcttctaccatcactct--ctcctccatggtcactcacccaccac---cagcacaacgtcactatttttgtccaagctttcatagtaactcttcaattct 35758618  T
Q  177 tcttgaattgcaaa 190  Q
     |||||||||||||    
T  35758619 ccttgaattgcaaa 35758632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 40450780 - 40450740
Alignment:
Q  187 caaacaataattaaatttatttattatccaaatctaatgaa 227  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  40450780 caaacaataattaaatttatttatcctccaaatctaatgaa 40450740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 5035266 - 5035218
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaacacta 61  Q
    ||||| ||||||||||| || ||||| | ||||||||||||||||||||    
T  5035266 ccattagattaaatgaggaatacattcttatcatactctctcaacacta 5035218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 21982560 - 21982748
Alignment:
Q  7 ttttcaccatttgattaaatgagaaacacattttaatcatactctctcaa-cactagatttttccacattatcttctaccatcactctctctcctccatg 105  Q
    |||| |||||| ||| |||| || |||||||||||||| |||||||| || |||||||||||| |||| | ||||||||||| |||||||||||||||||    
T  21982560 ttttgaccattagatcaaataaggaacacattttaatcctactctctaaaacactagattttttcacactttcttctaccattactctctctcctccatg 21982659  T
Q  106 gtcactcacccaccaccttc-----agcataaggccactgtttctgtccaagctctcatcaacattgttcaattcttcttgaattgcaa 189  Q
    |||||||||||||||||| |     |||||||  ||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  21982660 gtcactcacccaccacctccaccagagcataactccattgtttctgtccaatctctcatcaacaatcttcaattcttcttgaattgcaa 21982748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 1035383 - 1035309
Alignment:
Q  23 aaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctct 97  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||||||| | ||||||||||||| |||||||    
T  1035383 aaatgagaaacacattttaatcatactctctcattactaaatttttccacactttcttctaccatcattctctct 1035309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 9427413 - 9427487
Alignment:
Q  23 aaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctct 97  Q
    ||||||| ||||||||||||||||||||| |||  |||||||||||||||| | ||||||| ||||| |||||||    
T  9427413 aaatgaggaacacattttaatcatactctttcattactagatttttccacactttcttctatcatcattctctct 9427487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 21982769 - 21982802
Alignment:
Q  194 taattaaatttatttattatccaaatctaatgaa 227  Q
    |||||||||||||||||| |||||||||||||||    
T  21982769 taattaaatttatttattctccaaatctaatgaa 21982802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 33018225 - 33018269
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaac 57  Q
    ||||| ||||||||||| |||| ||||| ||||||||||||||||    
T  33018225 ccattagattaaatgaggaacatatttttatcatactctctcaac 33018269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 27420288 - 27420113
Alignment:
Q  7 ttttcaccatttgattaaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctctcctccatgg 106  Q
    |||| |||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |  |||||||||||||||    
T  27420288 ttttgaccattagatcaaatgaggaacacattttaatcatactctctaaacactagattttttcacactatcttctaccatta--ctctctcctccatgg 27420191  T
Q  107 tcactcacccaccaccttcagcataaggccactgtttctgtccaagctctcatcaacattgttcaattcttcttgaattgcaaa 190  Q
    |||||   |||||||   ||||||||  |   |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  27420190 tcact---ccaccac---cagcataacactgttgtttctgtccaagctctcatcaacactcttcaattcttcttgaattgcaaa 27420113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 50827081 - 50827037
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaac 57  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||    
T  50827081 ccattagattaaatgagaaacatatttttatcatactctctcaac 50827037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 6076032 - 6076080
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaacacta 61  Q
    ||||| ||||||||||| || ||||||| |||||| |||||||||||||    
T  6076032 ccattagattaaatgaggaatacatttttatcatagtctctcaacacta 6076080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 31390813 - 31390761
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaacactagatt 65  Q
    ||||| || |||||||| |||||||||| ||| ||||||||||||| ||||||    
T  31390813 ccattggaataaatgaggaacacatttttatcctactctctcaacattagatt 31390761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 47334257 - 47334309
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaacactagatt 65  Q
    ||||| |||||||||||||||| ||  | ||| ||||||||||||||||||||    
T  47334257 ccattagattaaatgagaaacaaatccttatcctactctctcaacactagatt 47334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 8503689 - 8503605
Alignment:
Q  39 ttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctctcctccatggtcactcacccaccacct 123  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8503689 ttaatcctactctctcaacactagatttttccacactatcttctaccatgactctctctcctccatggtcactcacccaccacct 8503605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 49398480 - 49398606
Alignment:
Q  23 aaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctctcctccatggtcactcacccaccacc 122  Q
    ||||||| |||||||||||||||||||||||||  |||| |||||| |||| | |||||||||||||   |||||||||||||||||||||||||||||     
T  49398480 aaatgaggaacacattttaatcatactctctcattactaaattttttcacactttcttctaccatca--ttctctcctccatggtcactcacccaccac- 49398576  T
Q  123 ttcagcataaggccactgtttctgtccaagct 154  Q
      ||||| |||| |||||||| ||||||||||    
T  49398577 --cagcacaaggtcactgtttttgtccaagct 49398606  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 5825391 - 5825500
Alignment:
Q  12 accatttgattaaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctctcctccatggtcact 111  Q
    |||||| ||| ||||||| |||||||| | ||| |||||||||||||||||||||||  ||| ||||||||||||||| |||||||||| |||| || ||    
T  5825391 accattagatcaaatgaggaacacattattatcctactctctcaacactagattttt-tacactatcttctaccatcattctctctcctgcatgctccct 5825489  T
Q  112 cacccaccacc 122  Q
    |||||||||||    
T  5825490 cacccaccacc 5825500  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 38014902 - 38014828
Alignment:
Q  23 aaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctct 97  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||||| | ||||||||||||| |||||||    
T  38014902 aaatgaggaacacattttaatcatactctctcactactagatttttccacactttcttctaccatcattctctct 38014828  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 11806149 - 11806198
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaacactag 62  Q
    ||||| ||||||||||| |||||||||| ||| |||||||||||||||||    
T  11806149 ccattagattaaatgaggaacacatttttatcctactctctcaacactag 11806198  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 9939180 - 9939233
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaa-cactagatt 65  Q
    ||||| |||||||||||||||| ||| | ||||||||||||||| |||||||||    
T  9939180 ccattagattaaatgagaaacatattcttatcatactctctcaaccactagatt 9939233  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 21165505 - 21165558
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaa-cactagatt 65  Q
    ||||||||||||||||| |||| ||||  ||||||||||||||| |||||||||    
T  21165505 ccatttgattaaatgaggaacatatttctatcatactctctcaaccactagatt 21165558  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 41533964 - 41534090
Alignment:
Q  23 aaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctctcctccatggtcactcacccaccacc 122  Q
    ||||||| ||||||||||||||||||||||| |  |||||||||||||||| | |||||||||||||   ||||||||||||||||||||| |||||||     
T  41533964 aaatgaggaacacattttaatcatactctcttattactagatttttccacactttcttctaccatca--ttctctcctccatggtcactcatccaccac- 41534060  T
Q  123 ttcagcataaggccactgtttctgtccaagct 154  Q
      ||||| |||| |||||||| ||||||||||    
T  41534061 --cagcacaaggtcactgtttttgtccaagct 41534090  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 44909339 - 44909213
Alignment:
Q  23 aaatgagaaacacattttaatcatactctctcaacactagatttttccacattatcttctaccatcactctctctcctccatggtcactcacccaccacc 122  Q
    ||||||| || |||||||||||||||||||| |  |||||||||||||||| | |||||||||||||   |||||||||||||||||||||||||||||     
T  44909339 aaatgaggaatacattttaatcatactctcttattactagatttttccacactttcttctaccatca--ttctctcctccatggtcactcacccaccac- 44909243  T
Q  123 ttcagcataaggccactgtttctgtccaagct 154  Q
      ||||| |||| |||||||| ||||||||||    
T  44909242 --cagcacaaggtcactgtttttgtccaagct 44909213  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 24322331 - 24322289
Alignment:
Q  23 aaatgagaaacacattttaatcatactctctcaacactagatt 65  Q
    ||||||| |||||||||| |||||||||||||| |||||||||    
T  24322331 aaatgaggaacacatttttatcatactctctcatcactagatt 24322289  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 33283217 - 33283275
Alignment:
Q  7 ttttcaccatttgattaaatgagaaacacattttaatcatactctctcaacactagatt 65  Q
    |||| |||||| ||| ||||||| |||||||||| |||||||||||||| |||||||||    
T  33283217 ttttgaccattagatcaaatgaggaacacatttttatcatactctctcatcactagatt 33283275  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 27279 - 27327
Alignment:
Q  13 ccatttgattaaatgagaaacacattttaatcatactctctcaacacta 61  Q
    ||||| ||||||||||| |||||||| | ||||||||||||||||||||    
T  27279 ccattagattaaatgaggaacacattcttatcatactctctcaacacta 27327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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