View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_low_43 (Length: 314)
Name: NF9164_low_43
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 32984433 - 32984712
Alignment:
| Q |
16 |
actttatgcatgatgctatctaggttttcgtttttcacttgctttctgattaattcaaacttgaaaccctttgttttatttcttggtcttcatggtatat |
115 |
Q |
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| T |
32984433 |
actttatgcatgatgctatctaggttttcgtttttcacttgctttccgattaattcaaacttgaaaccctttgttttatttcttggtcttcatggtatat |
32984532 |
T |
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| Q |
116 |
attatattactacttgatgatgattgatctatgatttgaagtgactatgtgctaatgtttgctatttcgtagttttatctatgtggttcaataatggctg |
215 |
Q |
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| T |
32984533 |
attatattactacttgatgatgattgatctatgatttgaagtgactatgtgctaatgtttgctatttcgtagttttatctatgtagttcaataatggctg |
32984632 |
T |
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| Q |
216 |
ctgataaagcttctgataaccagttagggttttgcgaagactccaaaatggatgataatgtcccttttcagcaaggttat |
295 |
Q |
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| T |
32984633 |
ctgataaagcttcggataatcagttagggttttgtgaagactccaaaatggatgataatgtcccttttaagcaaggttat |
32984712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 39112980 - 39113102
Alignment:
| Q |
68 |
attcaaactt-gaaaccctttgttttatttcttggtcttcatgg-----tatatat-tat-attactacttgatgatgattgatctatgatttgaagtga |
159 |
Q |
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| T |
39112980 |
attcaaactttgaaaccctttattttatttcttggtcttcaagtatagttatatatgtattattactacttgatcatgattgatctatgatttgaagtga |
39113079 |
T |
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| Q |
160 |
ctatg-tgctaatgtttgctattt |
182 |
Q |
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| T |
39113080 |
-tatgctgctcatgtttgctattt |
39113102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 39112814 - 39112901
Alignment:
| Q |
195 |
tatgtggttcaataatggctgctgataaagcttctgataaccagttagggttttgcgaagactccaaaatggatgataatgtcccttt |
282 |
Q |
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| T |
39112814 |
tatgtagttcaataatggctgctcacgacgcttctgataacaatttagggttttctgtagactcccaactggatgacaatgtcccttt |
39112901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 39103765 - 39103799
Alignment:
| Q |
115 |
tattatattactacttgatgatgattgatctatga |
149 |
Q |
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| T |
39103765 |
tattatattactacttgatgatgattgatctatga |
39103799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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