View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9164_low_45 (Length: 310)

Name: NF9164_low_45
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9164_low_45
NF9164_low_45
[»] chr5 (1 HSPs)
chr5 (19-294)||(8252203-8252478)
[»] chr1 (1 HSPs)
chr1 (111-291)||(44894376-44894556)
[»] chr6 (1 HSPs)
chr6 (129-291)||(19157016-19157178)
[»] chr4 (4 HSPs)
chr4 (196-283)||(12786890-12786977)
chr4 (129-167)||(20506957-20506995)
chr4 (230-294)||(33096217-33096281)
chr4 (230-294)||(13154231-13154295)
[»] chr2 (1 HSPs)
chr2 (237-294)||(21582400-21582457)
[»] chr8 (1 HSPs)
chr8 (230-281)||(43770279-43770330)
[»] chr7 (3 HSPs)
chr7 (230-292)||(16541645-16541707)
chr7 (230-292)||(16623955-16624017)
chr7 (230-294)||(7502311-7502375)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 8252478 - 8252203
Alignment:
Q  19 gacctcatgttaacaaacaaaagggagctggttatctgcgtcatacagcacaaagtatgaggcatattgcaagacttccggctaaagaccgtagtgcttc 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8252478 gacctcatgttaacaaacaaaagggagttggttatctgcgtcatacggcacaaagtatgaggcatattgcaagacttccggctaaagaccgtagtgcttc 8252379  T
Q  119 tcagtcgtaagttaataatgagtggcagaactggttggtgcttcatggtactgattgtgtaacaacagaggacgttcgggggatagggaaggagattggg 218  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8252378 tcagtcgtcagttaataatgagtggcagaactggttggtgcttcatggtactgattgtgtaacaacagaggacgttcgggggatagggaaggagattggg 8252279  T
Q  219 ataaaatttgcaggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtgatg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  8252278 ataaaatttgcaggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaataaggtgatg 8252203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 44894556 - 44894376
Alignment:
Q  111 agtgcttctcagtcgtaagttaataatgagtggcagaactggttggtgcttcatggtactgattgtgtaacaacagaggacgttcgggggatagggaagg 210  Q
    |||| ||||||||| |  ||||||||||| ||| |||| |||||||||||||||||||||||| | ||  ||   ||||| |||  ||||||||| ||||    
T  44894556 agtgtttctcagtcatctgttaataatgactgggagaattggttggtgcttcatggtactgatcgagtggcacaggaggatgttacggggataggaaagg 44894457  T
Q  211 agattgggataaaatttgcaggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtg 291  Q
    |||||||  |||||||||  || ||||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  44894456 agattggactaaaatttggcggagataataataatatgtttgatgttttgtctagtctgagacgaaaaaataaagagggtg 44894376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 291
Target Start/End: Complemental strand, 19157178 - 19157016
Alignment:
Q  129 gttaataatgagtggcagaactggttggtgcttcatggtactgattgtgtaacaacagaggacgttcgggggatagggaaggagattgggataaaatttg 228  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||   ||  | |  |||||||||  || | ||||||||||  ||||  | ||||||     
T  19157178 gttaataatgattggcaaaactggttggtgcttcatggtattgataaagtggctaatgaggacgttaaggagttagggaaggaacttggtctcaaattta 19157079  T
Q  229 caggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtg 291  Q
      || || ||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||    
T  19157078 atggagacaaaaatattatgtttgatgtgttatctagtgtgagaccaaaaaataaagagggtg 19157016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 283
Target Start/End: Complemental strand, 12786977 - 12786890
Alignment:
Q  196 gggggatagggaaggagattgggataaaatttgcaggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataa 283  Q
    ||||||||||||||| | ||||  | ||||||   ||||||||||||||| ||||||||||||||||||| | | |||||||||||||    
T  12786977 gggggatagggaaggcggttggacttaaatttaatggggataaaaataatctgtttgatgtgttgtctagggagggaagaaaaaataa 12786890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 20506957 - 20506995
Alignment:
Q  129 gttaataatgagtggcagaactggttggtgcttcatggt 167  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  20506957 gttaataatgagtggcaaaactggttggtgcttcatggt 20506995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 33096217 - 33096281
Alignment:
Q  230 aggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtgatg 294  Q
    ||||||||| ||||||  ||| |||||||||||  ||| | ||||||||||||||||||||||||    
T  33096217 aggggataagaataatcagttcgatgtgttgtcaggtgcgggaagaaaaaataaagagggtgatg 33096281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 13154231 - 13154295
Alignment:
Q  230 aggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtgatg 294  Q
    |||||| || |||||||  ||||||||||||||  | ||| ||||||||||||||||||| ||||    
T  13154231 aggggacaagaataataaatttgatgtgttgtcaggggtgggaagaaaaaataaagagggagatg 13154295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 21582457 - 21582400
Alignment:
Q  237 aaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtgatg 294  Q
    |||||||||||||||||||||||||| || ||| |||||||  |||||||||||||||    
T  21582457 aaaaataatatgtttgatgtgttgtcaagggtgggaagaaattataaagagggtgatg 21582400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 43770279 - 43770330
Alignment:
Q  230 aggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaat 281  Q
    |||||| ||||||||||||||||||||||||||  | ||| |||||||||||    
T  43770279 aggggacaaaaataatatgtttgatgtgttgtcatgggtgggaagaaaaaat 43770330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 16541645 - 16541707
Alignment:
Q  230 aggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtga 292  Q
    |||||| ||||| ||||||||||||||||||||  | | | ||||||||||||| ||||||||    
T  16541645 aggggacaaaaagaatatgtttgatgtgttgtccggagcgggaagaaaaaataaggagggtga 16541707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 16624017 - 16623955
Alignment:
Q  230 aggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtga 292  Q
    |||||| ||||| ||||||||||||||||||||  | | | ||||||||||||| ||||||||    
T  16624017 aggggacaaaaagaatatgtttgatgtgttgtccggagcgggaagaaaaaataaggagggtga 16623955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 7502311 - 7502375
Alignment:
Q  230 aggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaagagggtgatg 294  Q
    |||||| ||||| ||||||||||||||||| ||  | ||| |||| |||||||||||||| ||||    
T  7502311 aggggacaaaaacaatatgtttgatgtgttatcaggggtgggaaggaaaaataaagagggagatg 7502375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University