View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_low_48 (Length: 292)
Name: NF9164_low_48
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 55012879 - 55012621
Alignment:
| Q |
14 |
gtttggtgttaaaaagaataagcaataagaattcagtattgtggatgttttttggaacatagtaattagcaatggtgaaagttgggaacatgatttcaaa |
113 |
Q |
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| T |
55012879 |
gtttggtgttaaaaagaataagcaataagaattcagtattgtggatgttttttggaacatagtaattagcaatggtgaaagttggtaacatgatttcaaa |
55012780 |
T |
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| Q |
114 |
gaaggaaacatcaattaaagaggaagtgaataagagggtgagtactaattaagatatgaatccataaggggaaatgtagatatactgatgcaaattccgt |
213 |
Q |
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| T |
55012779 |
gaaggaaacatcaattaaagaggaagtgaataagagggtgagtactaattaagatatgaatccataaggggaaatgtagatatactaatgcaaattccgt |
55012680 |
T |
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| Q |
214 |
gatattgaactttatataagtaataaattgatctgaaccaattaagcatgtcctggttg |
272 |
Q |
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| T |
55012679 |
gatattgaactttatacaagtaataaattcatctgaaccaattaagcatgtcctggttg |
55012621 |
T |
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