View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_low_49 (Length: 289)
Name: NF9164_low_49
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 34976709 - 34976455
Alignment:
| Q |
7 |
aaaaccatgttggtttcgtcgtatggataaatttttgaagcttagatatttcaagtggatcagacttctaaaaggtttaaaatcaataaacaatgcacct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976709 |
aaaaccatgttggtttcgtcgtatggataaatttttgaagcttaaatatttcaagtggatcagacttctaaaaggtttaaaatcaataaacaatgcacct |
34976610 |
T |
|
| Q |
107 |
ttaaaatcaagcaccttcagtgtcctatgttttttcaagattctattcacgatggattcctcttcataatttgatttatctatgaaaagaaatagtgacc |
206 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
34976609 |
ttaaaatcaagcaccttcagtgtcctatgctttttcaagattctattcacgatggattcctcttcataatttgatttatctgtgaaaagaaatagagaca |
34976510 |
T |
|
| Q |
207 |
gaatatgtgagttttaaatacatgctctgaaatcaccggaactagttgttattga |
261 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
34976509 |
gaatatgtgagttttcaatacatgctctgaaatcaccggaactagttgctattga |
34976455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 231
Target Start/End: Complemental strand, 34983797 - 34983590
Alignment:
| Q |
27 |
gtatggataaatttttgaagcttagatatttcaagtggatcagacttctaaaaggtttaaaatcaataaacaat---gcacctttaaaatcaagcacctt |
123 |
Q |
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||||| ||||||| |||||||||| |||||||||||||||||||||||||||| |||||| ||| |||| ||| ||| ||| ||||||||||||||| |
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| T |
34983797 |
gtatgtataaattcttgaagcttaaatatttcaagtggatcagacttctaaaatgtttaagatccctaaaaaatctggcatcttgaaaatcaagcacctt |
34983698 |
T |
|
| Q |
124 |
cagtgtcctatgttttttcaagattctattcacgatggattcctcttcataatttgatttatctatgaaaagaaatagtgaccgaatatgtgagttttaa |
223 |
Q |
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| T |
34983697 |
cagtgtcctgtactttttcaagattctattcacgctggattcctttgcattatttgatttatctgtgaaaagaaatagtgaccgaatatgtgagttttca |
34983598 |
T |
|
| Q |
224 |
atacatgc |
231 |
Q |
| |
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||||||| |
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| T |
34983597 |
ttacatgc |
34983590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 246
Target Start/End: Complemental strand, 34990521 - 34990316
Alignment:
| Q |
44 |
aagcttagatatttcaagtggatcagacttctaaaaggtttaaaatcaataaacaatgc---acctttaaaatcaagcaccttcagtgtcctatgttttt |
140 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||| ||| || | | ||| |||| |||||||||||||||||| || |||| |
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| T |
34990521 |
aagcttagatatttcaagtggatcagacatctaaaaggtttataatcaacaaaacatccgacatcttctaaatgaagcaccttcagtgtcctctgctttt |
34990422 |
T |
|
| Q |
141 |
tcaagattctattcacgatggattcctcttcataatttgatttatctatgaaaagaaatagtgaccgaatatgtgagttttaaatacatgctctgaaatc |
240 |
Q |
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| || ||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34990421 |
tgaatattcttttcaggatggattcctctaaataatttgatttatctgtgaaaagaaatagtgaccgaatatgtgagttttcaatacatgctctgaaatc |
34990322 |
T |
|
| Q |
241 |
accgga |
246 |
Q |
| |
|
|||||| |
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|
| T |
34990321 |
accgga |
34990316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 45 - 231
Target Start/End: Original strand, 2304649 - 2304838
Alignment:
| Q |
45 |
agcttagatatttcaagtggatcagacttctaaaaggtttaaaatcaataaacaat---gcacctttaaaatcaagcaccttcagtgtcctatgtttttt |
141 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||||| || ||||| |
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| T |
2304649 |
agcttaaatatttcaagtggaacagacttctaaaaggttcaaaatcaataaacaatttggcatcttgaaaatcaagcaccttcagtgtcctgtgcttttt |
2304748 |
T |
|
| Q |
142 |
caagattctattcacgatggattcctcttcataatttgatttatctatgaaaagaaatagtgaccgaatatgtgagttttaaatacatgc |
231 |
Q |
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|||||||||| ||| ||| ||| |||| |||| |||||||||| | |||||| ||||| |||||||||||||||||||| ||||||||| |
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| T |
2304749 |
caagattctactcatgatagatatctctacatactttgatttatttgtgaaaaaaaatactgaccgaatatgtgagttttcaatacatgc |
2304838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 41 - 257
Target Start/End: Complemental strand, 40581235 - 40581022
Alignment:
| Q |
41 |
ttgaagcttagatatttcaagtggatcagacttctaaaaggtttaaaatcaataaacaatg---cacctttaaaatcaagcaccttcagtgtcctatgtt |
137 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||| || ||| |||||||||||||||||||||||| || | |
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| T |
40581235 |
ttgaagcttaaatatttcaagtggaccagacttctaaaatgtttaaaatcaataatcaatgagtcatcttgaaaatcaagcaccttcagtgtcctgtgct |
40581136 |
T |
|
| Q |
138 |
ttttcaagattctattcacgatggattcctcttcataatttgatttatctatgaaaagaaatagtgaccgaatatgtgagttttaaatacatgctctgaa |
237 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||| ||||| | ||||||| ||||||||||||||||||||||| ||||| |||| |||| |
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| T |
40581135 |
ttttcaagattctattcaccatggattcatct---aaatt---tttatttgtgaaaagttgtagtgaccgaatatgtgagttttcaatacgtgctatgaa |
40581042 |
T |
|
| Q |
238 |
atcaccggaactagttgtta |
257 |
Q |
| |
|
||||| |||| | ||||||| |
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| T |
40581041 |
atcactggaattggttgtta |
40581022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 230
Target Start/End: Original strand, 22656226 - 22656417
Alignment:
| Q |
42 |
tgaagcttagatatttcaagtggatcagacttctaaaaggtttaaaatcaataaacaat---gcacctttaaaatcaagcaccttcagtgtcctatgttt |
138 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||| ||| |||| ||||||||| ||| ||| ||| |||||||||||||||||||| ||| ||||| |
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| T |
22656226 |
tgaagcttaaatattttaagtggaccagacttcccaaatttttataatcaataagtaatatggcatcttgaaaatcaagcaccttcagtggcctgtgttt |
22656325 |
T |
|
| Q |
139 |
tttcaagattctattcacgatggattcctcttcataatttgatttatctatgaaaagaaatagtgaccgaatatgtgagttttaaatacatg |
230 |
Q |
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| ||||||||||| | | ||| ||| ||| | |||||||||||| | ||||||||||||||||||||| || |||||||| |||||||| |
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| T |
22656326 |
tgtcaagattctacttataatgttttcatctaaaaaatttgatttatttgtgaaaagaaatagtgaccgaacatatgagttttcaatacatg |
22656417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 35754703 - 35754666
Alignment:
| Q |
250 |
agttgttattgaaacacacacacataagaataatctac |
287 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |
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|
| T |
35754703 |
agttgttattgaaatacacacacataaaaataatctac |
35754666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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