View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9164_low_5 (Length: 748)
Name: NF9164_low_5
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 630; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 17 - 738
Target Start/End: Original strand, 28726247 - 28726980
Alignment:
| Q |
17 |
caaaatagtattgaaccaaagtgatttgaagaacaacggcctcagatgtttgtttcatgtgtagatagtcctttgaatcaacatcatagatagcttccca |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28726247 |
caaaatagtattgaaccaaaatgatttgaagaacaacggcctcaaatgtttgtttcatgtgtagatagtcctttgaatcaacatcatagatagcttccca |
28726346 |
T |
|
| Q |
117 |
attcccattcaaaggtagtaagacctgaggaatacaactagtcctagtacaataattgggtcgaggaaccagtacaataaacaaaatctttgattcatta |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28726347 |
attcccattcagaggtagtaagacctgaggaatacaactagtcctagtacaataattgggtcgaggaaccagtacaataaacaaaatctttgattcatta |
28726446 |
T |
|
| Q |
217 |
aactcatcatttgcattgatgacaatagacnnnnnnnnnn-cagaatctagagtaagttttaaaacaagtggcttaaagattatccttctatcttcaatc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28726447 |
aactcatcatttgcattgatgacaatagacaaaaaaaaaaacagaatctagagtaagttttaaaacaagtggcttaaagattatccttctatcttcaatc |
28726546 |
T |
|
| Q |
316 |
aaatgaggctactgataaatttcaagacatgggaaagtacacattatatttacatgtttatgatgattggtgtggaggttggacttcagctaagagaaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28726547 |
aaatgaggctactgataaatttcaagacatgggaaagtacacattatatttacatgtttatgatgattggtgtggaggttggacttcagctaagagaaaa |
28726646 |
T |
|
| Q |
416 |
ccattgaccatgatattctgcaagcaataagcagattttagga-----------gtgaatagttggatcaaggcaccagtcaagcacaatactttataca |
504 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28726647 |
ccattgaacatgatattctgcaagcaataagcagattttaggatgtcttatctagtgaatagttggatcaaggcaccagtcaagcacaatactttataca |
28726746 |
T |
|
| Q |
505 |
atttctcattcccaacaccttattaactccaaagaataattgcaaattactttgttcttattgtggacatatagcataaagtactgagaagcaaaaatca |
604 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28726747 |
atttcttattcccaacaccttattaactccaaagaataattgcaaattactttgttcttattgtggacatatagcataaagtactgagaagcaaaaatca |
28726846 |
T |
|
| Q |
605 |
ttgaagttatcacagtttcttacttaggtacatggtgagttgctactaccaaccatatatgtctctgctagtgtgtagtgtaggcaaaacaaacacaaaa |
704 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28726847 |
ttgaagttatcacagtttctcacttaggtacatggtgagttgctactaccaaccatatatgtctctgctagtgtgtagtgtaggcaaaacaaacacaaaa |
28726946 |
T |
|
| Q |
705 |
tatgatacccttagaccttagcgcaccaccaaac |
738 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
28726947 |
tatgatacccttagaccttagcgcacctccaaac |
28726980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 277 - 370
Target Start/End: Original strand, 28733296 - 28733389
Alignment:
| Q |
277 |
aaaacaagtggcttaaagattatccttctatcttcaatcaaatgaggctactgataaatttcaagacatgggaaagtacacattatatttacat |
370 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
28733296 |
aaaaaaagtggcttaaagattatccttctgtcttcaatcaaatgaggctattgataaatttcaagacatgggaaactacaaattatatttacat |
28733389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 28733164 - 28733292
Alignment:
| Q |
118 |
ttcccattcaaaggtagtaagac-ctgaggaatacaactagtcctagtacaataattgggtcgaggaaccagtacaataaacaaaatctttgattcatta |
216 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||| || ||||||||||||||||||||||| |||||||||||| ||||||| ||||| || |||||||| |
|
|
| T |
28733164 |
ttcccattcagaggtagtaagacacctaggaatataagtagtcctagtacaataattgggtggaggaaccagtataataaac-aaatcattcattcatta |
28733262 |
T |
|
| Q |
217 |
aactcatcatttgcattgatgacaatagac |
246 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |
|
|
| T |
28733263 |
aactcgtcatttgcattgatgacaaaagac |
28733292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 429
Target Start/End: Original strand, 28733806 - 28733837
Alignment:
| Q |
398 |
acttcagctaagagaaaaccattgaccatgat |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28733806 |
acttcagctaagagaaaaccattgaccatgat |
28733837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 28739409 - 28739371
Alignment:
| Q |
362 |
tatttacatgtttatgatgattggtgtggaggttggactt |
401 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28739409 |
tatttacatgtttatgatgatt-gtgtggaggttggactt |
28739371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 29163583 - 29163534
Alignment:
| Q |
295 |
attatccttctatcttcaatcaaatgaggctactgataaatttcaagaca |
344 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||||| |||| |
|
|
| T |
29163583 |
attatccttctatcttcaatcaattgaggctattgatagatttcaggaca |
29163534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University