View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_low_50 (Length: 281)
Name: NF9164_low_50
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_50 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 2832434 - 2832703
Alignment:
| Q |
12 |
ataatactaaactatgcttttacataaaaggttctaaatattatttagattagattactgaatacactaaaatgatttaaattactgaaattaatctaat |
111 |
Q |
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| T |
2832434 |
ataatactaaactatgcttttacataaaaggttctaaatattatttagattagattaatgaatacactaaaatgatttaaattactgaaattaatctaat |
2832533 |
T |
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| Q |
112 |
ccaaattaatggataacaccattctctttcacaccattctccttcactttttcctctaacttttcatcaaccttaaccttttcttcctcttgaatcaatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2832534 |
ccaaattaatggataacaccattctctttcacaccattctccttcactttttcctctaacttttcatcaaccttaaccttttcttcctcttgaatcaatt |
2832633 |
T |
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| Q |
212 |
cctgtttctctttctctgccttgagctttgcttcctcatcctctatctttttctttgcttcctcctcatc |
281 |
Q |
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| T |
2832634 |
cctgtttctctttctgtgccttgagctttgcttcctcatcctctatctttttctttgcttcctcctcatc |
2832703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 2843180 - 2842917
Alignment:
| Q |
12 |
ataatactaaactatgcttttacataaaaggttctaaatattatttagattagattactgaatacactaaaatgatttaaattactgaaattaatctaat |
111 |
Q |
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|||||||| ||| ||||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||| |||||| ||||||||||||||||| |
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| T |
2843180 |
ataatacttaaccatgcttttatataaaaggttcaaaatattatttagacta-----ctgaatacactaaattgacttaaat-actgaaattaatctaat |
2843087 |
T |
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| Q |
112 |
ccaaattaatggataacaccattctctttcacaccattctccttcactttttcctctaacttttcatcaaccttaaccttttcttcctcttgaatcaatt |
211 |
Q |
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| T |
2843086 |
ccaaatcaatggatgacgccattctctttcacaccattctccttcacattttcctctaacttttcatcagccttaaccttttcttcctcttgagccaatt |
2842987 |
T |
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| Q |
212 |
cctgtttctctttctctgccttgagctttgcttcctcatcctctatctttttctttgcttcctcctcatc |
281 |
Q |
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| T |
2842986 |
ctagtttctctttctctgccttgagctttacttcctcatcctctatctttttctttgcttcctcctcatc |
2842917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 2829610 - 2829511
Alignment:
| Q |
182 |
ccttaaccttttcttcctcttgaatcaattcctgtttctctttctctgccttgagctttgcttcctcatcctctatctttttctttgcttcctcctcatc |
281 |
Q |
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|||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2829610 |
ccttcaccttttcttcctcttgagtcaattcttgtttctctttctctgccttgagctttgcttcctcatcttctatctttttctttgcttcctcctcatc |
2829511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 2829723 - 2829604
Alignment:
| Q |
24 |
tatgcttttacataaaaggttctaaatattatttagattagattactgaatacactaaaatgatttaaattactgaaattaatctaatccaaattaatgg |
123 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||| ||||||||||||||||||||||| | |
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| T |
2829723 |
tatgcttttacattaaaggttctaaatattatttagattagattagtgaatacactaaatagatttacatcactaaaattaatctaatccaaattaatag |
2829624 |
T |
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| Q |
124 |
ataacaccattctctttcac |
143 |
Q |
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|| ||||||||||| ||||| |
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| T |
2829623 |
atgacaccattctccttcac |
2829604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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