View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9164_low_52 (Length: 272)

Name: NF9164_low_52
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9164_low_52
NF9164_low_52
[»] chr5 (3 HSPs)
chr5 (36-256)||(14416971-14417192)
chr5 (36-247)||(30654775-30654985)
chr5 (87-165)||(1326049-1326125)
[»] chr7 (2 HSPs)
chr7 (36-249)||(25035371-25035586)
chr7 (148-201)||(17710951-17711004)
[»] chr2 (1 HSPs)
chr2 (103-201)||(18815018-18815116)
[»] chr8 (4 HSPs)
chr8 (36-201)||(29386830-29386994)
chr8 (120-201)||(8833827-8833908)
chr8 (36-151)||(7272273-7272388)
chr8 (36-97)||(8834257-8834318)
[»] scaffold0209 (4 HSPs)
scaffold0209 (36-130)||(7464-7558)
scaffold0209 (36-130)||(20918-21012)
scaffold0209 (114-201)||(7564-7651)
scaffold0209 (114-201)||(21018-21105)
[»] chr3 (1 HSPs)
chr3 (118-201)||(20387908-20387992)
[»] chr1 (1 HSPs)
chr1 (39-157)||(33153389-33153513)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 36 - 256
Target Start/End: Complemental strand, 14417192 - 14416971
Alignment:
Q  36 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattcattgcagttgacaaacgatgtgtgtcatttgaattaaa 135  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14417192 gcacttatggttgctgcaagttcaggggagatgagctcttctagagggatggtcagagattcattgcagttgacaaacgatgtgtgtcatttgaattaaa 14417093  T
Q  136 cttgtttgatttgtttaaattagggtggtaggtactcattttatatttccaatgatatacaatgta-nnnnnnnnnaagagatgtataatgtattcgttc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||| ||||    
T  14417092 cttgtttgatttgtttaaattagggtggtaggtactcattttatatttccaatgatatacaatgtattttttttttaagagatgtataatgtatttgttc 14416993  T
Q  235 ttttcattatcaaccaagttta 256  Q
    |||||||| |||||||||||||    
T  14416992 ttttcattttcaaccaagttta 14416971  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 247
Target Start/End: Original strand, 30654775 - 30654985
Alignment:
Q  36 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggat-----ggtcagagattcattgcagttgacaaacgatgtgtgtcatttgaa 130  Q
    |||||||||||||||||||| ||| ||||||||| || |||||||||| |     |||| || |||||    ||||||||||||||| |   ||||||||    
T  30654775 gcacttatggttgctgcaagctcaggggagatgagcttttctagagggcttggctggtccgatattcaacatagttgacaaacgatgcg---catttgaa 30654871  T
Q  131 ttaaacttgtttgatttgtttaaattagggtggtaggtactcattttatatttccaatgatatacaatgtannnnnnnnnaagagatgtataatgtattc 230  Q
    |||||||||||||||||| ||||||||||||||||| || ||  |||||||| ||||||||||||||| |          ||||||| |||||||||||     
T  30654872 ttaaacttgtttgatttgcttaaattagggtggtagctattcgatttatattaccaatgatatacaattt---ttttttgaagagatatataatgtattt 30654968  T
Q  231 gttcttttcattatcaa 247  Q
    |||||||||||||||||    
T  30654969 gttcttttcattatcaa 30654985  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 1326125 - 1326049
Alignment:
Q  87 gtcagagattcattgcagttgacaaacgatgtgtgtcatttgaattaaacttgtttgatttgtttaaattagggtggta 165  Q
    |||||||||||| ||  ||||||| |||| ||||  |||||||||||||||||||||||  | ||||| ||||||||||    
T  1326125 gtcagagattcactggggttgacatacgacgtgt--catttgaattaaacttgtttgataggcttaaactagggtggta 1326049  T

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Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 36 - 249
Target Start/End: Complemental strand, 25035586 - 25035371
Alignment:
Q  36 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattcattgcagttgacaaacgatgtgtgtcatttgaattaaa 135  Q
    |||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  25035586 gcacttgtggttgctgcaagttcaaggaagatgagctcttctagagggatggtcagagattcagtgcagttgataaacgatgtgtgtcatttaaattaaa 25035487  T
Q  136 cttgtttgatttgtttaaattagggtggtaggtactcattttatatttccaatgatatacaatgta--nnnnnnnnnaagagatgtataatgtattcgtt 233  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||           ||||||||||||||||||| |||    
T  25035486 cttgtttgatttgtttaaattagggtggtagctactcattttatatttccaatgatatacaatatatttgttttttgaagagatgtataatgtatttgtt 25035387  T
Q  234 cttttcattatcaacc 249  Q
    ||||||||||||||||    
T  25035386 cttttcattatcaacc 25035371  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 17711004 - 17710951
Alignment:
Q  148 gtttaaattagggtggtaggtactcattttatatttccaatgatatacaatgta 201  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  17711004 gtttaaattagggtggtagctactcattttatattttcaatgatatacattgta 17710951  T

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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 18815116 - 18815018
Alignment:
Q  103 agttgacaaacgatgtgtgtcatttgaattaaacttgtttgatttgtttaaattagggtggtaggtactcattttatatttccaatgatatacaatgta 201  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  18815116 agttgacaatggatgtgtgtcatttgaattaaacttgtttgatttgcttaaattagggtggtagctactcattttatatttccaatgatatacattgta 18815018  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 29386994 - 29386830
Alignment:
Q  36 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattcattgcagttgacaaacgatgtgtgtcatttgaattaaa 135  Q
    |||||||||||||||||||||| | ||||||||| || |||    ||| |||| ||||||||| |   |||||||  |||||||||||||||||||| ||    
T  29386994 gcacttatggttgctgcaagtttaagggagatgagcttttcgtttgggttggt-agagattcactatggttgacattcgatgtgtgtcatttgaattgaa 29386896  T
Q  136 cttgtttgatttgtttaaattagggtggtaggtactcattttatatttccaatgatatacaatgta 201  Q
    ||||||||||||| ||||||||| ||||||  |||||| ||| |||||||||||| ||||||||||    
T  29386895 cttgtttgatttgcttaaattagagtggtaactactcaatttgtatttccaatgacatacaatgta 29386830  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 8833908 - 8833827
Alignment:
Q  120 tgtcatttgaattaaacttgtttgatttgtttaaattagggtggtaggtactcattttatatttccaatgatatacaatgta 201  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||  ||| || ||| |||||||| ||||||| ||||||    
T  8833908 tgtcatttgaattaaacttgtttgatttgcttaaattagggtggtaactacccaatttgtatttccattgatatataatgta 8833827  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 7272388 - 7272273
Alignment:
Q  36 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattcattgcagttgacaaacgatgtgtgtcatttgaattaaa 135  Q
    ||||| |||||||||||| ||||| || |||||| ||||||||    | |||||||| ||| ||||   |||||| || || ||||  ||||||||||||    
T  7272388 gcactaatggttgctgcatgttcatggcagatgagctcttctatcaagttggtcagatatttattgtgtttgacatacaatatgtgaaatttgaattaaa 7272289  T
Q  136 cttgtttgatttgttt 151  Q
    ||||||||||||||||    
T  7272288 cttgtttgatttgttt 7272273  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 8834318 - 8834257
Alignment:
Q  36 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattc 97  Q
    |||||||||||||||||||||| | |||||||| |||||| |  |||| |||||||||||||    
T  8834318 gcacttatggttgctgcaagtttaggggagatgcactcttttgtagggctggtcagagattc 8834257  T

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Target: scaffold0209 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 7464 - 7558
Alignment:
Q  36 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattcattgcagttgacaaacgatgtgtgtcatttgaa 130  Q
    |||||||||||||||||||||||| |||||| |  |||||||  |||| |||||||||||||  ||  ||||||| |||||||||||||||||||    
T  7464 gcacttatggttgctgcaagttcaagggagacgtgctcttctctagggctggtcagagattcgatgtggttgacatacgatgtgtgtcatttgaa 7558  T

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Target: scaffold0209; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 20918 - 21012
Alignment:
Q  36 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattcattgcagttgacaaacgatgtgtgtcatttgaa 130  Q
    |||||||||||||||||||||||| |||||| |  |||||||  |||| |||||||||||||  ||  ||||||| |||||||||||||||||||    
T  20918 gcacttatggttgctgcaagttcaagggagacgtgctcttctctagggctggtcagagattcgatgtggttgacatacgatgtgtgtcatttgaa 21012  T

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Target: scaffold0209; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 7564 - 7651
Alignment:
Q  114 gatgtgtgtcatttgaattaaacttgtttgatttgtttaaattagggtggtaggtactcattttatatttccaatgatatacaatgta 201  Q
    |||||||| |||||||||  ||||| ||||||||| || |||||||||||||  || | | ||| |||||||||||||||||||||||    
T  7564 gatgtgtgccatttgaatagaacttttttgatttgctttaattagggtggtatctaatgaatttgtatttccaatgatatacaatgta 7651  T

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Target: scaffold0209; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 21018 - 21105
Alignment:
Q  114 gatgtgtgtcatttgaattaaacttgtttgatttgtttaaattagggtggtaggtactcattttatatttccaatgatatacaatgta 201  Q
    |||||||| |||||||||  ||||| ||||||||| || |||||||||||||  || | | ||| |||||||||||||||||||||||    
T  21018 gatgtgtgccatttgaatagaacttttttgatttgctttaattagggtggtatctaatgaatttgtatttccaatgatatacaatgta 21105  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 20387908 - 20387992
Alignment:
Q  118 tgtgtcatttgaattaaacttgtttgatttgtttaaat-tagggtggtaggtactcattttatatttccaatgatatacaatgta 201  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||  ||| ||| |||||||||||| |||||||| ||||||||    
T  20387908 tgtgtcatttgaattaaacttgtttgatttacttaaatatagggttttagctacgcattttatattttcaatgatacacaatgta 20387992  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 33153389 - 33153513
Alignment:
Q  39 cttatggttgctgcaagttcacgggagatgaactcttctagaggga--tggtcagaga----ttcattgcagttgacaaacgatgtgtgtcatttgaatt 132  Q
    |||||||||||| |||||||| ||||||||| |||||||| || ||  |||| || ||    |||| || |||||||| |  |||||||||| |||||||    
T  33153389 cttatggttgcttcaagttcaggggagatgagctcttctatagagagctggttagtgaatgattcactgtagttgacatataatgtgtgtcagttgaatt 33153488  T
Q  133 aaacttgtttgatttgtttaaatta 157  Q
    ||| |||||||||||| ||||||||    
T  33153489 aaatttgtttgatttgcttaaatta 33153513  T

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