View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9164_low_55 (Length: 261)
Name: NF9164_low_55
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_55 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 34990122 - 34989871
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||| |
|
|
| T |
34990122 |
tctgttaaatatctttcttcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccattgttgtatcattctctttgatttaa |
34990023 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatcttttttattctggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34990022 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatcatagctaagacctaaaatcttttttattctggt |
34989923 |
T |
|
| Q |
201 |
caaatgggaatcattccttagctctaaagtcatattttcactacatctctgc |
252 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
34989922 |
caaatgggaatcattccttagctctacagtcatattttcactaaatctctgc |
34989871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2305047 - 2305297
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2305047 |
tctgataaatatccttctgcaacttcttccaaagtcttcccactttcctccttcacaaacccttcagctatccactgtcgaatcactctctttgatttaa |
2305146 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatcttttttattctggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||| | ||| |
|
|
| T |
2305147 |
cttcataatcttctggatacattccaaaatat-acaaacacgatttaagataaaaaggcaaatcaccatagctaaaacctaaaatcttttttatcccggt |
2305245 |
T |
|
| Q |
201 |
caaatgggaatcattccttagctctaaagtcatattttcactacatctctgc |
252 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
2305246 |
caaatgggaatcattctttaactctaaagtcatattttcactaaatctctgc |
2305297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 34976276 - 34976026
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34976276 |
tctgttaaatatccttttgcaacttcttccaaagtcttgccactttcctccttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
34976177 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatcttttttattctggt |
200 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |||||||| |||||||||||||||||| | ||| |
|
|
| T |
34976176 |
cttcataaccttttggatacattccaaaatataacaaacacgatttaagataacaaggcagatcatcatagctaaaacctaaaatcttttttatcccggt |
34976077 |
T |
|
| Q |
201 |
caaatgggaatcattccttagctctaaagtcatattttcactacatctctg |
251 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||||||| ||||||| |
|
|
| T |
34976076 |
caaatgagaatcattctttagctcaaaagtcatattttcactaaatctctg |
34976026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 34983387 - 34983137
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34983387 |
tctgttaaatatccttttgcaacttcttccaaagtcttgccactttcctccttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
34983288 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatcttttttattctggt |
200 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |||||||| |||||||||||||||||| | ||| |
|
|
| T |
34983287 |
cttcataaccttttggatacattccaaaatataacaaacacgatttaagataacaaggcagatcatcatagctaaaacctaaaatcttttttatcccggt |
34983188 |
T |
|
| Q |
201 |
caaatgggaatcattccttagctctaaagtcatattttcactacatctctg |
251 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||||||||||||| ||||||| |
|
|
| T |
34983187 |
caaatgagaatcattctttagctcaaaagtcatattttcactaaatctctg |
34983137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 252
Target Start/End: Complemental strand, 40580836 - 40580587
Alignment:
| Q |
4 |
gttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaactt |
103 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40580836 |
gttaaatatacttcagcaacttcttccaaagtctttccactttcctccttcacaaacccttcagctatccactgtagaatcactctctttgatttaactt |
40580737 |
T |
|
| Q |
104 |
cataatcttctggatacattccaaaatataacaaacatgatttaagata-aaaaggcaaatcatgatagctaagacctaaaatcttttttattctggtca |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| || ||||||| ||||||||||||||||| | | ||| |
|
|
| T |
40580736 |
cataatcttctggatacattccaaaatataacaaacaggatttaagataaaaaaagcaaattatcgtagctaaatcctaaaatcttttttatcccgatca |
40580637 |
T |
|
| Q |
203 |
aatgggaatcattccttagctctaaagtcatattttcactacatctctgc |
252 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40580636 |
aatcggaatcattccttagctctaaagtcatattttcactaaatctctgc |
40580587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 22656627 - 22656866
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || | |||||||||||||||| || |
|
|
| T |
22656627 |
tctgttaaatatccttctgcaacttcttccaaagttttccccctttcttctttcacaaaaccttcagctatccattgccgtatcactctctttgattcaa |
22656726 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatcttttttattctggt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||||| | ||| | || |||||||| | ||| |
|
|
| T |
22656727 |
cttcataatcttctggatatattccaaaatacaacaaacatgacttaagataaaaaggcaaatcatcgtagctgaaaccaagtattttttttatcccggt |
22656826 |
T |
|
| Q |
201 |
caaatgggaatcattccttagctctaaagtcatattttca |
240 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
22656827 |
taaatgggaatcattatttaactctaaagttatattttca |
22656866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 22620457 - 22620696
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| || |||||| ||||||||| | || |
|
|
| T |
22620457 |
tctgttaagtatccttctgcaacttcttccaaagtattccccctttcttcttttacaaacccttcagctatccattgccgaatcaatctctttgaatcaa |
22620556 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatcttttttattctggt |
200 |
Q |
| |
|
||| ||||||||||||||| | ||||||||| || |||||||||||||||| || ||||||||||| |||||| | |||||| || ||||| || | | |
|
|
| T |
22620557 |
ctttataatcttctggatataatccaaaatacaataaacatgatttaagatgaagaggcaaatcatcatagctgaaacctaatatttttttaatccctat |
22620656 |
T |
|
| Q |
201 |
caaatgggaatcattccttagctctaaagtcatattttca |
240 |
Q |
| |
|
||||| || ||| ||| ||||||||||||||||||||||| |
|
|
| T |
22620657 |
caaattgggatccttctttagctctaaagtcatattttca |
22620696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 21946529 - 21946364
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
21946529 |
tctgttaaatatccttctgccacttcttccaaagtcttccctctttcctccttcacaaacccttcagctatccattgtcgaatcactctcttcgatttaa |
21946430 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcat |
166 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| ||||| || ||||| |||||||||||| |
|
|
| T |
21946429 |
cttcataatcttctggatatactccaaaataaaacaagcatgacttgagatagcaaggcaaatcat |
21946364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 22628096 - 22628338
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| || || ||||| ||||||||||| |||||||||||| | ||| |||||| ||||||||||| || |
|
|
| T |
22628096 |
tctgttaaatatccttctgtgacttcttcgaaagtttttcccctttcttctttcacaaatccttcagctatcaattgtcgaatcaatctctttgattcaa |
22628195 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatcttttttattctggt |
200 |
Q |
| |
|
| ||||||| ||||||||| | ||||||||| ||| ||||||||||||||||||||||| ||||| ||||||| |||||||| ||| ||| | || |
|
|
| T |
22628196 |
cctcataatattctggatatagtccaaaatacgacacacatgatttaagataaaaaggcatatcattgtagctaaaacctaaaacttttcttacccgagt |
22628295 |
T |
|
| Q |
201 |
caaatgggaatcattccttagctctaaagtcatattttcacta |
243 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
22628296 |
caaatgggaatccttgtttagctctaaagtcatattttcacta |
22628338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 30988866 - 30989031
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
30988866 |
tctgttaaatatccttctgcaacgtcttccaaagtcttccctctttcctccttcacgaacccttcagctacccattgtcgaatcaatctctttgatttaa |
30988965 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcat |
166 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| ||||| || ||| | |||||||||||| |
|
|
| T |
30988966 |
cttcataatcttctggatatattccaaaatacaacaagcatgacttgagagagtaaggcaaatcat |
30989031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 22647748 - 22647982
Alignment:
| Q |
4 |
gttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaactt |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||| || | ||| ||||| ||||||||||| |||||||||| ||||||| ||| || |||| | ||| ||||| |
|
|
| T |
22647748 |
gttaaatatcgttctgcaacttcttccaaggtataccccctttcttctttcacaaatccttcagctacccactgtcgaaacagtctcctcgatccaactt |
22647847 |
T |
|
| Q |
104 |
cataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatcttttttattctggtcaa |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||| | |||||||| || |||| | || ||| |
|
|
| T |
22647848 |
cataatcttcgggatacattccaaaatataagaaacatggtttaagatagaaaggcaaatcattgtagctgaatcctaaaattttgcttatcccggccaa |
22647947 |
T |
|
| Q |
204 |
atgggaatcattccttagctctaaagtcatatttt |
238 |
Q |
| |
|
| | ||||| ||| ||||||||||||||||||||| |
|
|
| T |
22647948 |
aagagaatctttctttagctctaaagtcatatttt |
22647982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 22105613 - 22105448
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||| || |||||||||| ||||||| |
|
|
| T |
22105613 |
tctgttaaatatccttctgccacttcgtccaaagtcttccccttttcctccttcacaaacccttcagctatccattgtcgagtcactctcttcgatttaa |
22105514 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcat |
166 |
Q |
| |
|
||||||||||||||||||| | |||||| || ||||| ||||| || ||||| |||||||||||| |
|
|
| T |
22105513 |
cttcataatcttctggatatactccaaagtacaacaagcatgacttgagatagtaaggcaaatcat |
22105448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 21931326 - 21931161
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||| ||||||| || |||||||||||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
21931326 |
tctgttaaatatccttctgccacttcttccaaagtcatccccttttcctccttgacaaacccttcagctatccattgtcgagtcactctctttgatttaa |
21931227 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcat |
166 |
Q |
| |
|
||||||||||||||||||| | ||||||||| || || |||| || ||||| |||||||||||| |
|
|
| T |
21931226 |
cttcataatcttctggatatactccaaaatacaagaagcatggcttgagatagtaaggcaaatcat |
21931161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 22053611 - 22053446
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||| ||||||||| |||||| |||| |
|
|
| T |
22053611 |
tctgataaatatccttctgccacttcttccaaagtcttccccttttcctccttcacaaacccttctgctatccattgtcgaatcactcgctttgaattaa |
22053512 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcat |
166 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| ||||| | ||||| |||||||||||| |
|
|
| T |
22053511 |
cttcataatcttctggatatactccaaaatacaacaagcatgactcgagatagtaaggcaaatcat |
22053446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 18966558 - 18966741
Alignment:
| Q |
11 |
atccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaacttcataatc |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |||| |||| |||| | |||| ||||||||| |
|
|
| T |
18966558 |
atccttctgcaatttcttccaaagtcttcccgctttcctccttcacaaacccttcagctatccattgtcgaattactcgctttaaattaatttcataatc |
18966657 |
T |
|
| Q |
111 |
ttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatcttttttat |
194 |
Q |
| |
|
|| |||| | | ||||||||| |||| ||||| || ||||| |||||||||||| |||||| | ||||||||| || ||||| |
|
|
| T |
18966658 |
ttatggacatactccaaaatactacaagcatgacttgagatagtaaggcaaatcatcatagcttaaacctaaaattttgtttat |
18966741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 22028897 - 22028740
Alignment:
| Q |
9 |
atatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaacttcataa |
108 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||| | ||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
22028897 |
atatccctctgccacttcttgcaaagtcttctccttttcctcccttacaaacccttcagctatccattgtcgaatcactctctttgatttaacttcataa |
22028798 |
T |
|
| Q |
109 |
tcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcat |
166 |
Q |
| |
|
||||||||||| | ||||||||| ||||| |||| || ||||| |||||||||||| |
|
|
| T |
22028797 |
tcttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat |
22028740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 22115990 - 22115825
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
||||||| |||||| ||||| ||||| |||| |||||| || |||||||| ||||||||||||||||||||||| ||| || | | |||||||||||||| |
|
|
| T |
22115990 |
tctgttatatatccctctgccacttcatccatagtctttcccctttcctccttcacaaacccttcagctatccattgtcgagtgattctctttgatttaa |
22115891 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcat |
166 |
Q |
| |
|
||||| |||||||||| || | ||||||||| ||||||||||| || ||||| |||||||||||| |
|
|
| T |
22115890 |
cttcaaaatcttctgggtatactccaaaatacaacaaacatgacttgagatagtaaggcaaatcat |
22115825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 22187885 - 22187728
Alignment:
| Q |
9 |
atatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaacttcataa |
108 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||| | ||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
22187885 |
atatccctctgccacttcttgcaaagtcttctccttttcctcccttacaaacccttcagctatccattgtcgaatcactctctttgatttaacttcataa |
22187786 |
T |
|
| Q |
109 |
tcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcat |
166 |
Q |
| |
|
||||||||||| | ||||||||| ||||| |||| || ||||| |||||||||||| |
|
|
| T |
22187785 |
tcttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat |
22187728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 21938058 - 21937893
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
||||||| |||||| ||||| |||||||||| |||||| || ||||||| |||||||| |||||||||||||| ||| |||| |||||||||| | ||| |
|
|
| T |
21938058 |
tctgttagatatccctctgccacttcttccatagtctttcccttttcctccttcacaaatccttcagctatccattgtcgaatgactctctttggtctaa |
21937959 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcat |
166 |
Q |
| |
|
|||| ||||||||||||| | ||||||||| ||||| ||||| || ||||| |||||||||||| |
|
|
| T |
21937958 |
tttcaaaatcttctggatatactccaaaatacaacaagcatgacttgagatagtaaggcaaatcat |
21937893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 22180322 - 22180157
Alignment:
| Q |
1 |
tctgttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaa |
100 |
Q |
| |
|
||||||| |||||| ||||| |||||||||| || || || ||||||| ||||||||||||||||||||||| | | || | |||||||| ||||||| |
|
|
| T |
22180322 |
tctgttagatatccctctgccacttcttccattgtttttcccttttcctccttcacaaacccttcagctatccattttcgagttactctcttcgatttaa |
22180223 |
T |
|
| Q |
101 |
cttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcat |
166 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| ||||||||||| || ||||| |||||||||||| |
|
|
| T |
22180222 |
cttcataatcctctggatatactccaaaatacaacaaacatgacttgagatagtaaggcaaatcat |
22180157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 22614850 - 22615018
Alignment:
| Q |
19 |
gcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaacttcataatcttctggat |
118 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||| | | |||| |||| || |||||| |||||||| | |
|
|
| T |
22614850 |
gcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagattcaatttcatagtcttctgggt |
22614949 |
T |
|
| Q |
119 |
acattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatct |
187 |
Q |
| |
|
| | ||||||||| |||||||||||| ||||||| |||||||||||| ||| || | || |||||||| |
|
|
| T |
22614950 |
ataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcattataactcaaacttaaaatct |
22615018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 22035379 - 22035257
Alignment:
| Q |
44 |
tttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaacttcataatcttctggatacattccaaaatataacaaacatga |
143 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||| | ||||||||| ||||| |||| |
|
|
| T |
22035379 |
tttcctccttcataaacccttcagctatccattgtcgagtcactctctttgatttaacttcaaaatcttctggatatactccaaaatacaacaagcatgg |
22035280 |
T |
|
| Q |
144 |
tttaagataaaaaggcaaatcat |
166 |
Q |
| |
|
|| ||||| |||||||||||| |
|
|
| T |
22035279 |
cttgagatagtaaggcaaatcat |
22035257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 22357625 - 22357769
Alignment:
| Q |
51 |
tttcacaaacccttcagctatccactgtagaatcactctctttgatttaacttcataatcttctggatacattccaaaatataacaaacatgatttaaga |
150 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || ||| | ||||||| | ||||| ||| ||||| ||||| | ||||||||| || |||||||| || || |
|
|
| T |
22357625 |
tttcacaaacccttcagcaatccattgtcgagtcaatgtctttgaatgaactttatagtcttcaggatataatccaaaatacaagaaacatgacttgagg |
22357724 |
T |
|
| Q |
151 |
taaaaaggcaaatcatgatagctaagacctaaaatcttttttatt |
195 |
Q |
| |
|
|| ||||||||||||| || |||| |||||||| ||| ||||| |
|
|
| T |
22357725 |
tagtaaggcaaatcatggtaactaaatcctaaaatttttcttatt |
22357769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 22367501 - 22367570
Alignment:
| Q |
5 |
ttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatcca |
74 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||| | || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
22367501 |
ttaaatgtccttctgcaacctcttccaatgtcattcccctttcttctttcacaaacccttcagcaatcca |
22367570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 22467528 - 22467666
Alignment:
| Q |
5 |
ttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaacttc |
104 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||| |||| || || || ||||||||||||||||| ||||| || || ||| ||||||| | |||| |
|
|
| T |
22467528 |
ttaaatatccttcagcaacctcttccaatgtcctccccctgtcttccttcacaaacccttcagcaatccattggcgagtcaacgtctttgaatgaactat |
22467627 |
T |
|
| Q |
105 |
ataatcttctggatacattccaaaatataacaaacatga |
143 |
Q |
| |
|
||| ||||| ||||| | ||||||||| || |||||||| |
|
|
| T |
22467628 |
atagtcttcaggatataatccaaaatacaagaaacatga |
22467666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 22442363 - 22442499
Alignment:
| Q |
49 |
tctttcacaaacccttcagctatccactgtagaatcactctctttgatttaacttcataatcttctggatacattccaaaatataacaaacatgatttaa |
148 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||| | ||||||| | ||||||| ||||| ||||| | ||||||||| || |||||||| || | |
|
|
| T |
22442363 |
tctttcacaaacccttcagctatccattgacgagtcaatgtctttgaacaagcttcatagtcttcgggatataatccaaaatacaagaaacatgacttga |
22442462 |
T |
|
| Q |
149 |
gataaaaaggcaaatcatgatagctaagacctaaaat |
185 |
Q |
| |
|
| | ||||||||||||| || || || |||||||| |
|
|
| T |
22442463 |
ggttgcaaggcaaatcatggtaactgagtcctaaaat |
22442499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 22635084 - 22635272
Alignment:
| Q |
6 |
taaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaacttca |
105 |
Q |
| |
|
|||||||||||||||||| ||||| || ||| | || || || |||||||| ||||||||||| ||||| || || ||| | | ||||| |||| | |
|
|
| T |
22635084 |
taaatatccttctgcaacctcttcaaatgtccttcccctgtcttctttcacgaacccttcagcaatccattggcgagtcaatgtttttgaacgaactata |
22635183 |
T |
|
| Q |
106 |
taatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatcttttttat |
194 |
Q |
| |
|
|| ||||| ||||| | ||||||||| || |||||||| || || || | ||||||||||| || ||||| |||||||| ||| |||| |
|
|
| T |
22635184 |
tagtcttcaggatataatccaaaatacaagaaacatgacttgaggtagcatggcaaatcatggtaactaagtcctaaaatttttcttat |
22635272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 3722359 - 3722268
Alignment:
| Q |
115 |
ggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatgatagctaagacctaaaatcttttttattctggtcaaatg |
206 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||| |||| |||||||||||| ||| ||||||| ||||||| || |||| || |||||||| |
|
|
| T |
3722359 |
ggatacatgccaaagtataacatgcatgatttcagatggtaaggcaaatcatcataactaagacataaaatccttattatactagtcaaatg |
3722268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 22430747 - 22430816
Alignment:
| Q |
5 |
ttaaatatccttctgcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatcca |
74 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||| | || ||| |||||||||||||||||||| ||||| |
|
|
| T |
22430747 |
ttaaatatccttctgcaacctctttcaatgtccttcccgttttttctttcacaaacccttcagcaatcca |
22430816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 22199471 - 22199395
Alignment:
| Q |
55 |
acaaacccttcagctatccactgtagaatcactctctttgatttaacttcataatcttctggatacattccaaaata |
131 |
Q |
| |
|
||||||||||| || ||||||||| ||| | |||||||||||||||| |||||||| || || ||||||||||| |
|
|
| T |
22199471 |
acaaacccttctgcaatccactgtctaattagtctctttgatttaactacataatctggagggtagattccaaaata |
22199395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 872290 - 872416
Alignment:
| Q |
6 |
taaatatccttctgcaacttcttccaaagtcttcccac-tttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaacttc |
104 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| || | ||||||| |||||||||||||||||||||||| || ||||||| | |||||||||||||| |
|
|
| T |
872290 |
taaatatccttctgcaaattcttcccaagtctttcctcctttcctccttcacaaacccttcagctatccaccgtcgaatcacccactttgatttaacttt |
872389 |
T |
|
| Q |
105 |
ataatcttctggatacattccaaaata |
131 |
Q |
| |
|
||| ||| |||||| ||||||||||| |
|
|
| T |
872390 |
ctaaccttatggatatattccaaaata |
872416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 1233567 - 1233693
Alignment:
| Q |
6 |
taaatatccttctgcaacttcttccaaagtcttcccac-tttcctctttcacaaacccttcagctatccactgtagaatcactctctttgatttaacttc |
104 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| || | ||||||| |||||||||||||||||||||||| || ||||||| | |||||||||||||| |
|
|
| T |
1233567 |
taaatatccttctgcaaattcttcccaagtctttcctcctttcctccttcacaaacccttcagctatccaccgtcgaatcacccactttgatttaacttt |
1233666 |
T |
|
| Q |
105 |
ataatcttctggatacattccaaaata |
131 |
Q |
| |
|
||| ||| |||||| ||||||||||| |
|
|
| T |
1233667 |
ctaaccttatggatatattccaaaata |
1233693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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