View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_low_65 (Length: 210)
Name: NF9164_low_65
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 48368001 - 48367826
Alignment:
| Q |
18 |
aggaaagtattttcattctcaagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaatttttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48368001 |
aggaaagtattttcattctcaagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcgtaagttgccaattcaggtggaatttttg |
48367902 |
T |
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| Q |
118 |
ggttaacatttgcagcaatccacccttcagaagctccatagtcagcagtacacaaaggtagcacccctgcatagtg |
193 |
Q |
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| T |
48367901 |
ggttaacatttgcagcaatccacccttcagaagctccatagtcagcagtacacaaaggtagcacccctgcatagtg |
48367826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 18045487 - 18045603
Alignment:
| Q |
38 |
aagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaatttttgggttaacatttgcagcaatc |
137 |
Q |
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| T |
18045487 |
aagctgagtgagaggaatgaactcaaagtatccattttgaggaaacacggcataagttgcaaattcagggggaagtttagggttaacatttgcagctatg |
18045586 |
T |
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| Q |
138 |
cacccttcagaagctcc |
154 |
Q |
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| T |
18045587 |
aacccttcagaagctcc |
18045603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 13979622 - 13979750
Alignment:
| Q |
30 |
tcattctcaagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaatttttgggttaacatttg |
129 |
Q |
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||||||| || ||||||||||||||||||||||||||| ||| ||||||||| || |||| |||||||||||| | |||| ||| ||||||| ||||| |
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| T |
13979622 |
tcattcttaacctgtgtgagaggaatgaactcaaagtatccattttgaggaaacaaaacataggttgccaattcaaggggaagtttagggttaatatttg |
13979721 |
T |
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| Q |
130 |
cagcaatccacccttcagaagctccatag |
158 |
Q |
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|||| || |||||||||||||||||||| |
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| T |
13979722 |
cagctatgaacccttcagaagctccatag |
13979750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 10264844 - 10264987
Alignment:
| Q |
50 |
aggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaatttttgggttaacatttgcagcaatccacccttcagaa |
149 |
Q |
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||||||||| ||||||||| ||||||||||||| || ||||||| || || ||||| | | ||| || || ||||||| ||||||||| ||||||||| |
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| T |
10264844 |
aggaatgaattcaaagtaagcaatttgaggaagaacaacataagtagcaaactcaggagccactttaggattcacatttgaagcaatccaaccttcagaa |
10264943 |
T |
|
| Q |
150 |
gctccatagtcagcagtacacaaaggtagcacccctgcatagtg |
193 |
Q |
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| T |
10264944 |
gcaccatattcagaagtcaacaaaggaacctctcctgcatagtg |
10264987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 10242959 - 10243102
Alignment:
| Q |
50 |
aggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaatttttgggttaacatttgcagcaatccacccttcagaa |
149 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| || ||||||| || || ||||| | | ||| || || ||||||| ||||||||| ||||||||| |
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| T |
10242959 |
aggaatgaattcaaagtaagcaatttgaggaagaacaacataagtagcaaactcaggagccactttaggattcacatttgaagcaatccaaccttcagaa |
10243058 |
T |
|
| Q |
150 |
gctccatagtcagcagtacacaaaggtagcacccctgcatagtg |
193 |
Q |
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| ||||| |||| ||| ||||||| | | | ||||||||||| |
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| T |
10243059 |
gagccatactcagaagtcaacaaaggaacctctcctgcatagtg |
10243102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 10272541 - 10272641
Alignment:
| Q |
50 |
aggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaatttttgggttaacatttgcagcaatccacccttcagaa |
149 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| || ||||||| || || ||||| | | ||| || || ||||||| ||||||||| ||||||||| |
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| T |
10272541 |
aggaatgaattcaaagtaagcaatttgaggaagaacaacataagtagcaaactcaggagccactttaggattcacatttgaagcaatccaaccttcagaa |
10272640 |
T |
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| Q |
150 |
g |
150 |
Q |
| |
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| |
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|
| T |
10272641 |
g |
10272641 |
T |
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