View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9164_low_67 (Length: 206)
Name: NF9164_low_67
Description: NF9164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9164_low_67 |
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| [»] scaffold0429 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 1446647 - 1446796
Alignment:
| Q |
31 |
agccctactcgaagatgagagtgattgaaaatttgaaatggaataagaaaattgtgagaataagaaacgaacctcttcttcaacattgaagtaaattaat |
130 |
Q |
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| T |
1446647 |
agccctactcgaagatgagagtgattga--------aatggaataagaaaattgtgagaataagaaacgaacctcttcttcaacattgaagtaaattaat |
1446738 |
T |
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| Q |
131 |
gatatttctcaaagataaataacaaatgagaacgattcaaactgagttatgagatttg |
188 |
Q |
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| T |
1446739 |
gatattgctcaaagataaataacaaatgagaacgattcaaacggagttatgagatttg |
1446796 |
T |
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Target: scaffold0429 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 5034 - 4972
Alignment:
| Q |
63 |
ttgaaatggaataagaaaattgtgagaataagaaacgaacctcttcttcaacattgaagtaaa |
125 |
Q |
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| T |
5034 |
ttgaaatgcaatgagaaaattgtgagagtaagaaacgaacctcttgttcaacattgaagtaaa |
4972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 122614 - 122676
Alignment:
| Q |
63 |
ttgaaatggaataagaaaattgtgagaataagaaacgaacctcttcttcaacattgaagtaaa |
125 |
Q |
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| T |
122614 |
ttgaaatggaatgagaaaactgtgagggtaagaaacgaacctgttcttcaacattgaagtaaa |
122676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 3641890 - 3641841
Alignment:
| Q |
69 |
tggaataagaaaattgtgagaataagaaacgaacctcttcttcaacattg |
118 |
Q |
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| T |
3641890 |
tggaataagaaaattgttagagtaataaatgaacctgttcttcaacattg |
3641841 |
T |
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