View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9165_high_16 (Length: 241)
Name: NF9165_high_16
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 39812863 - 39813075
Alignment:
| Q |
11 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812863 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
39812962 |
T |
|
| Q |
111 |
tttgtccatacaggtatcatatcattaatccatttagattttccaatgtacgatttgcatgactaaataacttaggagtaacatgggtagatatttaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812963 |
tttgtccatacaggtatcatatcattaatccatttagattttccaatgtacgatttgcatgactaaataacttaggagtaacatgggtagatatttaaaa |
39813062 |
T |
|
| Q |
211 |
tttacgataaagt |
223 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39813063 |
tttacgataaagt |
39813075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 39824376 - 39824584
Alignment:
| Q |
11 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
39824376 |
tggtggtagaatatttgaaagacgcttgcacgttggttttattactatggaaccaagcccactttttgttcctcaatatcttgattccactctcatcata |
39824475 |
T |
|
| Q |
111 |
tttgtccatacaggtatcatatcattaatccatttagattttccaatgtacgatttgcatgactaaataacttaggagtaacatgggtagatatttaaaa |
210 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||| |||||||||||||||| |||||||| ||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
39824476 |
tttgtccttacaggtatcatatcatcgatccatataggttttccaatgtacgatctgcatgacaaaa----ttacgagtaacatggctagatatttaaaa |
39824571 |
T |
|
| Q |
211 |
tttacgataaagt |
223 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39824572 |
tttacgataaagt |
39824584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 39920308 - 39920450
Alignment:
| Q |
11 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
110 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39920308 |
tggtggtagaatattggaaagacgcttacacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcata |
39920407 |
T |
|
| Q |
111 |
tttgtccatacaggtatcatatcattaatccatttagattttc |
153 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
39920408 |
tttgtccttacaggtatcatatcattgatccatttagattttc |
39920450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 39908806 - 39908947
Alignment:
| Q |
11 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
110 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39908806 |
tggtggtagaatattggaaagacgcttacacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcata |
39908905 |
T |
|
| Q |
111 |
tttgtccatacaggtatcatatcattaatccatttagatttt |
152 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
39908906 |
tttgtccttacaggtatcatatcattaatccatttggatttt |
39908947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 39804192 - 39804320
Alignment:
| Q |
11 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
110 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39804192 |
tggtggtagaatatctgaaagacgtttacacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcata |
39804291 |
T |
|
| Q |
111 |
tttgtccatacaggtatcatatcattaat |
139 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
39804292 |
tttgtccttacaggtatcatatcattaat |
39804320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 39881471 - 39881613
Alignment:
| Q |
11 |
tggtggtagaatatctgaaagacgcttgcacgttggtttcattactatggaaccaagctcactttttgttcctcaatatcttgattctactctcatcgta |
110 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| || |
|
|
| T |
39881471 |
tggtggaagaatattggaaagacgcttgcacgttggttttattactatggaaccaagctcactttttgttcctcaatatctggattccactctaatcata |
39881570 |
T |
|
| Q |
111 |
tttgtccatacaggtatcatatcattaatccatttagattttc |
153 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||||| |
|
|
| T |
39881571 |
tttgtccttacaggtatcatatcaataactcatttagattttc |
39881613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 39804480 - 39804544
Alignment:
| Q |
155 |
aatgtacgatttgcatgactaaataacttaggagtaacatgggtagatatttaaaatttacgata |
219 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||| |
|
|
| T |
39804480 |
aatgtacaatttgcatgactaaaaaacttaggagtaacatggctagatacttaaaatttaagata |
39804544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University