View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9165_high_2 (Length: 500)
Name: NF9165_high_2
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 3341483 - 3341949
Alignment:
| Q |
1 |
agattagaaaattttatttttatcagaatctctctttaagtgtttttaggcttaaaaacttctaacactaccttgtgcatttgttaaactagataccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3341483 |
agattagaaaattttatttttatcagagtctctctttaagtgtttttaggcttaaaaacttgtaacactaccttgtgcatttgttaaactagataccaaa |
3341582 |
T |
|
| Q |
101 |
ggtaatgggtggttatgatccatgtctagatgactatgctaaaatattttataacagaccagatgttcagaaggctctccatgccagtgatggtcacagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3341583 |
ggtaatgggtggttatgatccatgtctagatgactatgctaaaatattttataacagaccagatgttcagaaggctctccatgccagtgatggtcacaat |
3341682 |
T |
|
| Q |
201 |
ctcaagaattggagtatttgcaagtaaatattttgactttcctaaccaaagtttgattaacacttatttgtttgtttatgatgttaattagaagtggtat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3341683 |
ctcaagaattggagtatttgcaagtaaatattttgactttcc---------------taacacttatttgtttgtttatgatgttaattagaagtggtat |
3341767 |
T |
|
| Q |
301 |
aatagaatgttggatccgacttctctaaagtgaacactttgagcacacttgttttagagtgtaacaaatcactttagaggaaccaaatcttagagcatgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3341768 |
aatagaatgttggatccgacttctctaaagtgaacactttgagcacacttgttttagagtgtaacaaatcactttagaggaaccaaatcttagagcatgt |
3341867 |
T |
|
| Q |
401 |
ggttttcatttgtctatattaatggttaatgaaaaacagtgatgacatatttcacgactgggcacaatcaaagcgttctatt |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3341868 |
ggttttcatttgtctatattaatggttaatgaaaaacagtgatgacatatttcacgactgggcacaatcaaagcgttctatt |
3341949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 3334086 - 3334256
Alignment:
| Q |
62 |
ctaacactaccttgtgcatttgttaaactagataccaaaggtaatgggtggttatgatccatgtctagatgactatgctaaaatattttataacagacca |
161 |
Q |
| |
|
|||||||| | ||||| ||||| | |||||||||||| | | ||||||||||||||||||||| | ||||||||||||||| ||||| |||| |||| |
|
|
| T |
3334086 |
ctaacacttctttgtggatttggttgactagataccaaggatcatgggtggttatgatccatgtttggatgactatgctaaagctttttacaacaaacca |
3334185 |
T |
|
| Q |
162 |
gatgttcagaaggctctccatgccagtgatggtcacagtctcaagaattggagtatttgcaagtaaatatt |
232 |
Q |
| |
|
||||||||||| || || ||||||||||||||||| ||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
3334186 |
gatgttcagaaagcccttcatgccagtgatggtcatagtctaaggaattggagtatttgcaagtatatatt |
3334256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 35793310 - 35793188
Alignment:
| Q |
105 |
atgggtggttatgatccatgtctagatgactatgctaaaatattttataacagaccagatgttcagaaggctctccatgccagtgatggtcacagtctca |
204 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||| || |||||||||||||||||||||||||| || ||||| ||||||||||| | ||| | |
|
|
| T |
35793310 |
atgggtggttatgacccatgcttggatgactatgctaaagctttctataacagaccagatgttcagaaggcccttcatgctagtgatggtcataatctaa |
35793211 |
T |
|
| Q |
205 |
agaattggagtatttgcaagtaa |
227 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35793210 |
agaattggagtatttgcaagtaa |
35793188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University