View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9165_high_9 (Length: 329)
Name: NF9165_high_9
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 6258115 - 6258175
Alignment:
| Q |
205 |
aataatatgtcccaaacaaaggttcgtgtcaattttaggtaatatagcacatgataaacaa |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6258115 |
aataatatgtcccaaacaaaggttcgtgtcaattttaggtaatatagcacatgataaacaa |
6258175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 6257991 - 6258062
Alignment:
| Q |
79 |
agttgtcacacaagttgtcataaaatagtataaatatcatttctcctttcaaaattaacattcagggtgaaa |
150 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6257991 |
agttgtcacaaaagttgtcataaaataatataaatatcatttctcctttcaaaattaacattaagggtgaaa |
6258062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University