View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9165_low_1 (Length: 886)

Name: NF9165_low_1
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9165_low_1
NF9165_low_1
[»] chr8 (7 HSPs)
chr8 (11-439)||(31671575-31672006)
chr8 (673-837)||(31671195-31671361)
chr8 (533-572)||(31671425-31671464)
chr8 (307-371)||(1838410-1838474)
chr8 (309-371)||(30587331-30587393)
chr8 (313-394)||(473478-473559)
chr8 (309-364)||(40473842-40473897)
[»] chr5 (3 HSPs)
chr5 (11-106)||(12992558-12992653)
chr5 (11-106)||(13067208-13067303)
chr5 (57-103)||(29444284-29444330)
[»] chr4 (2 HSPs)
chr4 (11-105)||(36092327-36092421)
chr4 (354-396)||(24407075-24407117)
[»] scaffold0481 (1 HSPs)
scaffold0481 (11-102)||(8384-8475)
[»] chr7 (3 HSPs)
chr7 (312-369)||(7964508-7964565)
chr7 (564-610)||(21268463-21268510)
chr7 (308-394)||(41521002-41521088)
[»] chr1 (2 HSPs)
chr1 (308-359)||(13842997-13843048)
chr1 (320-394)||(22206467-22206541)
[»] chr6 (1 HSPs)
chr6 (308-359)||(32868839-32868890)


Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 31672006 - 31671575
Alignment:
Q  11 tttggtgttgaagagagcggctgccgcatataagagagaatgaatagttcgtgggatttgcacgacaaaatgtgtcgtgcacattagcatttctcttctt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31672006 tttggtgttgaagagagcggctgccgcatataagagagaatgaatagttcgtgggatttgcacgacaaaatttgtcgtgcacattagcatttctcttctt 31671907  T
Q  111 tatattattagtccatttacatgcttgcaattttggcagcacccttctaggatggagtgtgaatatcaaatcaatggtatggtacaagtcacggcattaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31671906 tatattattagtccatttacatgcttgcaattttggcagcacccttttaggatggagtgtgaatatcaaatcaatgggatggtacaagtcacggcattaa 31671807  T
Q  211 gttaatctatagataatttacatacttgcaaaaactcagctctgtctaattttctacagttcaagggtttgattgcaaggtt---nnnnnnnnnnnngtt 307  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |    
T  31671806 tttaatctatagataatttacatacttgcaaaaactcagctctgtctaattttctacagttcaagggtttgattgcaaggttaaaaaaataaaaaaaaat 31671707  T
Q  308 aatctatagataataataaagcaagcttagtttttgggcaaatatgacatttatcatcttctaaaagcatccttccttaatactcttctaactaatgttt 407  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||    
T  31671706 aatctatagataataataaagcaagcttaatttttgggcaaatatgacatttatcatctcctaaaagcatccttccttaatactcttctaactatttttt 31671607  T
Q  408 aataagaaaactattttatttctttgtttttt 439  Q
    ||||||||||||||||||||||||||||||||    
T  31671606 aataagaaaactattttatttctttgtttttt 31671575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 673 - 837
Target Start/End: Complemental strand, 31671361 - 31671195
Alignment:
Q  673 atctgcttctgttttcggtcatttgtacatcctctactattttatttcttaact--ataaactctagttctccactttctttctcagttaagtggattgt 770  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||    
T  31671361 atctgcttctgttttcggtcatttgtacctcctctactattttatttcttaacatcataaactccagttctccactttctttctcagttaagtggattgt 31671262  T
Q  771 caagagcgaagaaaaacaatagaaagaactaacatagggaaagtgagtcgagactttgatgtgaaaa 837  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31671261 caagagcgaagaaaaataatagaaagaactaacatagggaaagtgagtcgagactttgatgtgaaaa 31671195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 572
Target Start/End: Complemental strand, 31671464 - 31671425
Alignment:
Q  533 gaaaaagttagccttttcttacttaattgttcaagattta 572  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31671464 gaaaaagttagccttttcttacttaattgttcaagattta 31671425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 1838474 - 1838410
Alignment:
Q  307 taatctatagataataataaagcaagcttagtttttgggcaaatatgacatttatcatcttctaa 371  Q
    ||||||||||||||||||||||||| |||||| ||| ||||| | || ||||| |||||||||||    
T  1838474 taatctatagataataataaagcaaacttagtattttggcaagtttgccatttgtcatcttctaa 1838410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 371
Target Start/End: Complemental strand, 30587393 - 30587331
Alignment:
Q  309 atctatagataataataaagcaagcttagtttttgggcaaatatgacatttatcatcttctaa 371  Q
    |||||||||||||||||||||||||| ||| ||| ||||| | ||| |||| |||||||||||    
T  30587393 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaa 30587331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 394
Target Start/End: Complemental strand, 473559 - 473478
Alignment:
Q  313 atagataataataaagcaagcttagtttttgggcaaatatgacatttatcatcttctaaaagcatccttccttaatactctt 394  Q
    |||||||||||||||||||| ||||| ||| ||||| | || ||||| ||||||| ||| | || |||||||| ||||||||    
T  473559 atagataataataaagcaagtttagtgttttggcaagtttgtcatttgtcatcttttaagaacaaccttccttcatactctt 473478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 40473897 - 40473842
Alignment:
Q  309 atctatagataataataaagcaagcttagtttttgggcaaatatgacatttatcat 364  Q
    |||||||||| ||||||||||||| ||||||||| ||||| | || ||||||||||    
T  40473897 atctatagattataataaagcaaggttagttttttggcaagtctgccatttatcat 40473842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 12992653 - 12992558
Alignment:
Q  11 tttggtgttgaagagagcggctgccgcatataagagagaatgaatagttcgtgggatttgcacgacaaaatgtgtcgtgcacattagcatttctct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12992653 tttggtgttgaagagagcggctgccgcatataagagagaatgaatagttcgtgggatttgcacgacaaaatgtgtcgtgcacattagcatttctct 12992558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 13067303 - 13067208
Alignment:
Q  11 tttggtgttgaagagagcggctgccgcatataagagagaatgaatagttcgtgggatttgcacgacaaaatgtgtcgtgcacattagcatttctct 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13067303 tttggtgttgaagagagcggctgccgcatataagagagaatgaatagttcgtgggatttgcacgacaaaatgtgtcgtgcactttagcatttctct 13067208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 29444330 - 29444284
Alignment:
Q  57 gttcgtgggatttgcacgacaaaatgtgtcgtgcacattagcatttc 103  Q
    |||||||||||||||||||||| |||| ||||| |||| ||||||||    
T  29444330 gttcgtgggatttgcacgacaacatgtttcgtgtacatgagcatttc 29444284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 36092327 - 36092421
Alignment:
Q  11 tttggtgttgaagagagcggctgccgcatataagagagaatgaatagttcgtgggatttgcacgacaaaatgtgtcgtgcacattagcatttctc 105  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36092327 tttggtgttgaagagagcggttgccgcatataagagagaatgaatagttcgtgggatttgcacaacaaaatgtgtcgtgcacattagcatttctc 36092421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 24407117 - 24407075
Alignment:
Q  354 acatttatcatcttctaaaagcatccttccttaatactcttct 396  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  24407117 acatttgtcatcttctaagagcatccttccttaatactcttct 24407075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 8384 - 8475
Alignment:
Q  11 tttggtgttgaagagagcggctgccgcatataagagagaatgaatagttcgtgggatttgcacgacaaaatgtgtcgtgcacattagcattt 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8384 tttggtgttgaagagagcggctgccgcatatcagagagaatgaatagttcgtgggatttacacgacaaaatgtgtcgtgcacattagcattt 8475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 7964565 - 7964508
Alignment:
Q  312 tatagataataataaagcaagcttagtttttgggcaaatatgacatttatcatcttct 369  Q
    ||||||||||||||||||||||||||| ||  ||||| |||||||||| |||||||||    
T  7964565 tatagataataataaagcaagcttagtattatggcaagtatgacatttgtcatcttct 7964508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 564 - 610
Target Start/End: Original strand, 21268463 - 21268510
Alignment:
Q  564 caagatttaggttcggtaagagtatgatttc-taactaaatcctacta 610  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||    
T  21268463 caagatttaggttcggtaagggtatgatttcttaactaaatcctacta 21268510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 308 - 394
Target Start/End: Original strand, 41521002 - 41521088
Alignment:
Q  308 aatctatagataataataaagcaagcttagtttttgggcaaatatgacatttatcatcttctaaaagcatccttccttaatactctt 394  Q
    ||||||||||||||||||||| ||| ||||| ||| ||||| | || ||||| ||||||||||  | || |||||||| ||||||||    
T  41521002 aatctatagataataataaaggaagtttagtattttggcaagtttgccatttgtcatcttctaggaacaaccttccttgatactctt 41521088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 13842997 - 13843048
Alignment:
Q  308 aatctatagataataataaagcaagcttagtttttgggcaaatatgacattt 359  Q
    ||||||||||||||||||||||||  ||||||||| ||||| ||||||||||    
T  13842997 aatctatagataataataaagcaatgttagttttttggcaagtatgacattt 13843048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 320 - 394
Target Start/End: Complemental strand, 22206541 - 22206467
Alignment:
Q  320 ataataaagcaagcttagtttttgggcaaatatgacatttatcatcttctaaaagcatccttccttaatactctt 394  Q
    ||||||||||||  |||||| || ||||| |  ||||||| ||||||||||| ||||||||||||| | ||||||    
T  22206541 ataataaagcaaagttagttctttggcaagttagacatttgtcatcttctaagagcatccttccttgacactctt 22206467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 32868890 - 32868839
Alignment:
Q  308 aatctatagataataataaagcaagcttagtttttgggcaaatatgacattt 359  Q
    ||||||||||||||||||||||||||||||| ||   |||| ||||||||||    
T  32868890 aatctatagataataataaagcaagcttagtattatagcaagtatgacattt 32868839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University