View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9165_low_11 (Length: 431)

Name: NF9165_low_11
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9165_low_11
NF9165_low_11
[»] chr8 (2 HSPs)
chr8 (119-407)||(9821130-9821418)
chr8 (1-115)||(9820399-9820513)
[»] chr4 (4 HSPs)
chr4 (1-115)||(38874031-38874145)
chr4 (119-221)||(38875382-38875481)
chr4 (240-340)||(38875620-38875720)
chr4 (341-407)||(38875750-38875816)
[»] chr2 (1 HSPs)
chr2 (119-237)||(38693599-38693718)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 119 - 407
Target Start/End: Original strand, 9821130 - 9821418
Alignment:
Q  119 atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9821130 atcatatggagcactgcttgacgtaaatacgaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag 9821229  T
Q  219 aagtcaactagtaaagtaaaatactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca 318  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9821230 aagtcaactagtaaagtaaactactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca 9821329  T
Q  319 atttcgttcatcgcacgccactcttcattaaaacctttctatatagtacacactaatggaattaatcctaagatttgttacctaacatt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9821330 atttcgttcatcgcacgccactcttcattaaaacctttctatatagtacacactaatggaattaatcctaagatttgttacctaacatt 9821418  T

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Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 9820399 - 9820513
Alignment:
Q  1 caacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagtaatgacagtatgggttcaaaatgtatgtttcactaac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9820399 caacaatgatcttagaatcagacatatttctaccaaaaagatcaacttaactcacagtaaagtaatgacagtatgggttcaaaatgtatgtttcactaac 9820498  T
Q  101 aaatataaacttacc 115  Q
    |||||||||||||||    
T  9820499 aaatataaacttacc 9820513  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 38874031 - 38874145
Alignment:
Q  1 caacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagtaatgacagtatgggttcaaaatgtatgtttcactaac 100  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| |||||||| | |||||||||||||||  |||||| ||||||||||||||||     
T  38874031 caacaatgatctcagaatcatacgtatttctaccacaaagatcaactcaactcacaatgaagtaatgacagtataagttcaagatgtatgtttcactaag 38874130  T
Q  101 aaatataaacttacc 115  Q
    |||||||||||||||    
T  38874131 aaatataaacttacc 38874145  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 38875382 - 38875481
Alignment:
Q  119 atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag 218  Q
    ||||||||||||||| ||||| |||||||  ||||||||| |||||||||||||||||||||||||||||||||||  ||||||||   |||||||||||    
T  38875382 atcatatggagcactacttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataag 38875478  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 38875620 - 38875720
Alignment:
Q  240 tactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagcaatttcgttcatcgcacgccac 339  Q
    |||||||||  ||||||||||||||||||  || ||||||||||||| ||||||||||| ||||  |||||||| | ||| |||||||||||||| ||||    
T  38875620 tactaaaaatcgatgtcaacaatcaaaagtggagcattcaattaatattacatcctttcacacaacaagttttgtatcaaattcgttcatcgcacaccac 38875719  T
Q  340 t 340  Q
    |    
T  38875720 t 38875720  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 407
Target Start/End: Original strand, 38875750 - 38875816
Alignment:
Q  341 cttcattaaaacctttctatatagtacacactaatggaattaatcctaagatttgttacctaacatt 407  Q
    |||||||||||| |||||| |||||| | | ||||  ||||||||||||||||| ||||||||||||    
T  38875750 cttcattaaaacatttctaaatagtaaaaattaattaaattaatcctaagatttattacctaacatt 38875816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 38693718 - 38693599
Alignment:
Q  119 atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag 218  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| || |||| |||||||||||||||||    
T  38693718 atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataag 38693619  T
Q  219 aa-gtcaactagtaaagtaa 237  Q
    || |  ||||||||||||||    
T  38693618 aaggaaaactagtaaagtaa 38693599  T

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