View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9165_low_13 (Length: 404)
Name: NF9165_low_13
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 38029936 - 38029548
Alignment:
| Q |
1 |
cgcgattctcagtgttagggtttcaaatttcaactatctttagatccaattttatggaaagccaagacaatctcagcgacggtgctttcaaaacccgccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38029936 |
cgcgattctcagtgttagggtttcaaatttcaactatctttagatccaattttatggaaagccaagacaatttcagcgacggtgctttcaaaacccgccg |
38029837 |
T |
|
| Q |
101 |
cgctctcacagacatgactaaccacccatcgaagagacccttatcttcaatctccggtgacgaagacggagcagacaatttactcaaaaagatttgtcac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38029836 |
cgctctcacagacatgactaaccacccatcgaagagacccttatcttcaatctccggtgacgaagacggagcagagaatttactcaaaaagatttgtcac |
38029737 |
T |
|
| Q |
201 |
aacgataagggtaaaaacccttgttccgagttacccttttcaggcaataattcttcacaagaacccagtttacccagtggcggaaccggtaccggaaccg |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38029736 |
aacgataagggcaaaaacccttgttccgagttacccttttcaggcaataattcttcacaagaacccagtttacccagtggcggaaccggtaccggaaccg |
38029637 |
T |
|
| Q |
301 |
atgattcgaatgatagttttgttggaagatctcagaatgaagggtttatcgaccgtggtatcgaacatgatgacaatttgggatcttcc |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38029636 |
atgattcgaatgatagttttgttggaagatctcagaatgaagggtttatcgaccgtggtatcgaacatgatgacaatttgggatcttcc |
38029548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University