View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9165_low_15 (Length: 403)
Name: NF9165_low_15
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_low_15 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 10135422 - 10135020
Alignment:
| Q |
1 |
ggggtcagttattgactcaaatgagaatagaagtaaacaacaaactatttactcaattcactacaggattgcaatattctaaaatgcactagaatatggg |
100 |
Q |
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| T |
10135422 |
ggggtcagttattgactcaaatgagaatagaagtaaacaacaaactatttactcaattcactacaggattgcaatattctaaaatgcactagaatatggg |
10135323 |
T |
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| Q |
101 |
acctgtgttgcgcacgacggtgcgacaaaaccaacttcgtttcttttctttttctatatattaggttttgatatcgagcataactcattcttacaaaatc |
200 |
Q |
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| T |
10135322 |
acctgtgttgcgcacgacggtgcgacaaaaccaacttcgtttcttttctttttctatatattaggttttgatatcgagcataactcattcctacaaaatc |
10135223 |
T |
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| Q |
201 |
ggcttgcaaggcgcggggtgccactctttcttttgaatgaataggttatagatagataaatagatgactaagaaaacgtcgatagcattactgaccttac |
300 |
Q |
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| T |
10135222 |
ggcttgcaaggcgaggggtgccactctttcttttgaatgaataggttatagattgatagatagatgactaagaaaacgtcgatagcattactgaccttac |
10135123 |
T |
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| Q |
301 |
agaagatgagacatcaatactgtctaaatgtcagattgaggcgaccgggacaaaggcaagtatcttgaaccaattcatctggtgctgaatttcgtatgat |
400 |
Q |
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| T |
10135122 |
agaagatgagacatcaatactgtctaaatgtcagattgaggcgaccgggacaaaggcatgtatcttgaaccaattcatctggtgctgaattttgtatgat |
10135023 |
T |
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| Q |
401 |
aga |
403 |
Q |
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| T |
10135022 |
aga |
10135020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 10144605 - 10144513
Alignment:
| Q |
1 |
ggggtcagttattgactcaaat---gagaatagaa--gtaaacaacaaactatttactcaattcactacaggattgcaatattctaaaatgca |
88 |
Q |
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| T |
10144605 |
ggggtcagttattaactcaaatattgaaaatagaaaagtaaacaacaaactatttactcaattcactaccggaaaacaatcttctaaaatgca |
10144513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 28496489 - 28496559
Alignment:
| Q |
159 |
tattaggttttgatatcgagcataactcattcttacaaaatcggcttgcaaggcgcggggtgccactcttt |
229 |
Q |
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| T |
28496489 |
tattaggtttttatattgagcctaactcatccttacaaaaccggcttgtaaggtgaggggtgccactcttt |
28496559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 33145649 - 33145702
Alignment:
| Q |
158 |
atattaggttttgatatcgagcataactcattcttacaaaatcggcttgcaagg |
211 |
Q |
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| T |
33145649 |
atattaggtttttatattgagcctaactcattcttacaaaaccggcttgtaagg |
33145702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 6908225 - 6908271
Alignment:
| Q |
159 |
tattaggttttgatatcgagcataactcattcttacaaaatcggctt |
205 |
Q |
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| T |
6908225 |
tattaggtttttatatcgagcctaactcatccttacaaaaccggctt |
6908271 |
T |
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