View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9165_low_16 (Length: 399)
Name: NF9165_low_16
Description: NF9165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9165_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 52286795 - 52287184
Alignment:
| Q |
1 |
tagataaactcaaataagtcaattgctagaactttaattaaatgttgacaaccatgaatgtttatgaaaatttgtattagtgaactggatatatctttca |
100 |
Q |
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| T |
52286795 |
tagataaactcaaataagtcaattgctcgaactttaattaaatgttgacaaccatgaatgtttatgaaaatttgtattagtgaactggatatatctttca |
52286894 |
T |
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| Q |
101 |
tcacaagtttactttctaattggaaagacaatgcatgaaaaatacaagacatgcaaagctacttttcaagttaacatttgctgagacttcttgcagtgtg |
200 |
Q |
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| T |
52286895 |
tcacaaggttactttctaattggaaagaccatgcatgaaaaatacaagacatgcaaagctacttttcaagttaacatttgctgagacttcttgcagtgtg |
52286994 |
T |
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| Q |
201 |
caattgctccttggattgagttttctatctctgaacttgcactgctgcaccttttgagaagctggtgagtttgatgacatccatatgatttgtttgaaag |
300 |
Q |
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| T |
52286995 |
caattgctccttggattgagttttctatctctgaacttgcactgctgcaccttttgagaagctggtgagtttgatgacatccatatgatttgtttgaaag |
52287094 |
T |
|
| Q |
301 |
tgaaaatgacgatgaaccagatatcgaagaatttgatgatgacttgtttcctgaaagaagtttgattccaacagagaatgatcttctgtg |
390 |
Q |
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| T |
52287095 |
tgaaaatgacgatgaaccagatatcgaagaatttgatgatgacttgtttcctgaaagaagtttgattccaacagagaatgatcttctgtg |
52287184 |
T |
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